Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20522 and SM_b20523 are separated by 473 nucleotides SM_b20523 and SM_b20525 are separated by 517 nucleotides
SM_b20522: SM_b20522 - hypothetical protein, at 548,378 to 548,746
_b20522
SM_b20523: SM_b20523 - hypothetical protein, at 549,220 to 550,428
_b20523
SM_b20525: SM_b20525 - transcriptional regulator, at 550,946 to 551,554
_b20525
Position (kb) 549
550
551 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 548.353 kb on - strand at 548.363 kb on + strand at 548.414 kb on - strand at 548.433 kb on + strand, within SM_b20522 at 548.434 kb on - strand, within SM_b20522 at 548.476 kb on + strand, within SM_b20522 at 548.519 kb on + strand, within SM_b20522 at 548.520 kb on - strand, within SM_b20522 at 548.520 kb on - strand, within SM_b20522 at 548.520 kb on - strand, within SM_b20522 at 548.544 kb on + strand, within SM_b20522 at 548.594 kb on + strand, within SM_b20522 at 548.595 kb on - strand, within SM_b20522 at 548.595 kb on - strand, within SM_b20522 at 548.595 kb on - strand, within SM_b20522 at 548.678 kb on + strand, within SM_b20522 at 548.679 kb on - strand, within SM_b20522 at 548.712 kb on - strand at 548.717 kb on + strand at 548.718 kb on - strand at 548.718 kb on - strand at 548.720 kb on + strand at 548.720 kb on + strand at 548.721 kb on - strand at 548.721 kb on - strand at 548.727 kb on + strand at 548.727 kb on + strand at 548.728 kb on - strand at 548.736 kb on - strand at 548.736 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.928 kb on + strand at 548.948 kb on + strand at 548.949 kb on - strand at 548.973 kb on - strand at 549.063 kb on + strand at 549.064 kb on - strand at 549.110 kb on - strand at 549.161 kb on - strand at 549.186 kb on + strand at 549.222 kb on - strand at 549.234 kb on - strand at 549.246 kb on + strand at 549.246 kb on + strand at 549.246 kb on + strand at 549.246 kb on + strand at 549.246 kb on + strand at 549.246 kb on + strand at 549.247 kb on - strand at 549.247 kb on - strand at 549.247 kb on - strand at 549.251 kb on + strand at 549.295 kb on + strand at 549.326 kb on + strand at 549.337 kb on - strand at 549.337 kb on - strand at 549.473 kb on - strand, within SM_b20523 at 549.476 kb on - strand, within SM_b20523 at 549.476 kb on - strand, within SM_b20523 at 549.562 kb on + strand, within SM_b20523 at 549.562 kb on + strand, within SM_b20523 at 549.562 kb on + strand, within SM_b20523 at 549.562 kb on + strand, within SM_b20523 at 549.562 kb on + strand, within SM_b20523 at 549.563 kb on - strand, within SM_b20523 at 549.563 kb on - strand, within SM_b20523 at 549.563 kb on - strand, within SM_b20523 at 549.577 kb on - strand, within SM_b20523 at 549.927 kb on - strand, within SM_b20523 at 549.944 kb on + strand, within SM_b20523 at 549.976 kb on + strand, within SM_b20523 at 549.977 kb on - strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.098 kb on - strand, within SM_b20523 at 550.098 kb on - strand, within SM_b20523 at 550.257 kb on + strand, within SM_b20523 at 550.298 kb on - strand, within SM_b20523 at 550.442 kb on + strand at 550.443 kb on - strand at 550.444 kb on + strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.499 kb on + strand at 550.499 kb on + strand at 550.499 kb on + strand at 550.500 kb on - strand at 550.500 kb on - strand at 550.500 kb on - strand at 550.524 kb on + strand at 550.524 kb on + strand at 550.525 kb on - strand at 550.805 kb on - strand at 550.805 kb on - strand at 550.831 kb on + strand at 550.832 kb on - strand at 550.832 kb on - strand at 550.898 kb on + strand at 550.898 kb on + strand at 550.898 kb on + strand at 550.899 kb on - strand at 551.049 kb on + strand, within SM_b20525 at 551.073 kb on - strand, within SM_b20525 at 551.100 kb on + strand, within SM_b20525 at 551.101 kb on - strand, within SM_b20525 at 551.101 kb on - strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.404 kb on - strand, within SM_b20525
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 548,353 - -0.2 548,363 + +0.5 548,414 - +0.6 548,433 + SM_b20522 0.15 +0.3 548,434 - SM_b20522 0.15 -0.6 548,476 + SM_b20522 0.27 -1.8 548,519 + SM_b20522 0.38 -2.8 548,520 - SM_b20522 0.38 +0.2 548,520 - SM_b20522 0.38 +1.6 548,520 - SM_b20522 0.38 +0.2 548,544 + SM_b20522 0.45 +0.3 548,594 + SM_b20522 0.59 -2.3 548,595 - SM_b20522 0.59 -0.2 548,595 - SM_b20522 0.59 +0.9 548,595 - SM_b20522 0.59 -0.5 548,678 + SM_b20522 0.81 -0.4 548,679 - SM_b20522 0.82 +2.4 548,712 - -1.3 548,717 + -0.5 548,718 - -1.4 548,718 - +2.0 548,720 + -0.9 548,720 + -2.2 548,721 - -1.2 548,721 - -1.9 548,727 + +0.5 548,727 + -0.0 548,728 - -0.0 548,736 - -1.2 548,736 - -2.6 548,743 - +1.8 548,743 - -1.2 548,928 + -0.1 548,948 + -0.6 548,949 - +0.6 548,973 - -2.8 549,063 + +0.4 549,064 - +0.1 549,110 - -0.4 549,161 - +1.2 549,186 + -1.2 549,222 - -0.3 549,234 - -1.6 549,246 + -1.3 549,246 + -0.5 549,246 + +0.1 549,246 + +0.2 549,246 + +1.6 549,246 + -2.1 549,247 - -0.4 549,247 - +0.9 549,247 - +0.0 549,251 + +0.9 549,295 + -0.7 549,326 + +0.2 549,337 - -1.0 549,337 - +0.0 549,473 - SM_b20523 0.21 -1.4 549,476 - SM_b20523 0.21 -2.1 549,476 - SM_b20523 0.21 +0.4 549,562 + SM_b20523 0.28 -0.6 549,562 + SM_b20523 0.28 -0.2 549,562 + SM_b20523 0.28 -3.8 549,562 + SM_b20523 0.28 +0.5 549,562 + SM_b20523 0.28 +0.5 549,563 - SM_b20523 0.28 -0.8 549,563 - SM_b20523 0.28 -1.6 549,563 - SM_b20523 0.28 -2.9 549,577 - SM_b20523 0.30 -0.3 549,927 - SM_b20523 0.58 -2.3 549,944 + SM_b20523 0.60 +1.0 549,976 + SM_b20523 0.63 -1.3 549,977 - SM_b20523 0.63 +1.4 550,097 + SM_b20523 0.73 -2.1 550,097 + SM_b20523 0.73 -2.3 550,097 + SM_b20523 0.73 +0.1 550,097 + SM_b20523 0.73 -1.7 550,098 - SM_b20523 0.73 -0.4 550,098 - SM_b20523 0.73 +1.6 550,257 + SM_b20523 0.86 -0.2 550,298 - SM_b20523 0.89 +0.3 550,442 + -0.7 550,443 - +0.5 550,444 + -0.5 550,445 - -0.3 550,445 - +0.2 550,445 - -2.2 550,445 - +1.5 550,499 + +0.6 550,499 + +0.7 550,499 + -0.6 550,500 - -2.5 550,500 - +0.2 550,500 - -0.8 550,524 + +0.2 550,524 + -2.1 550,525 - -3.2 550,805 - -0.8 550,805 - -2.5 550,831 + -3.7 550,832 - +0.4 550,832 - -0.1 550,898 + +0.7 550,898 + -2.6 550,898 + -0.8 550,899 - +1.2 551,049 + SM_b20525 0.17 +0.4 551,073 - SM_b20525 0.21 -2.0 551,100 + SM_b20525 0.25 +0.1 551,101 - SM_b20525 0.25 +0.2 551,101 - SM_b20525 0.25 -1.4 551,206 + SM_b20525 0.43 -1.3 551,206 + SM_b20525 0.43 +0.0 551,206 + SM_b20525 0.43 -0.8 551,206 + SM_b20525 0.43 +0.2 551,394 + SM_b20525 0.74 +0.9 551,394 + SM_b20525 0.74 +1.1 551,394 + SM_b20525 0.74 +0.3 551,395 - SM_b20525 0.74 -1.8 551,395 - SM_b20525 0.74 -0.6 551,395 - SM_b20525 0.74 +0.6 551,404 - SM_b20525 0.75 -1.6
Or see this region's nucleotide sequence