Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20483 and SM_b20484 are separated by 273 nucleotides SM_b20484 and SM_b20485 are separated by 105 nucleotides
SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561
_b20483
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 498.878 kb on + strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.879 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.978 kb on + strand, within SM_b20483 at 499.108 kb on + strand, within SM_b20483 at 499.109 kb on - strand at 499.109 kb on - strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.116 kb on - strand, within SM_b20483 at 499.172 kb on - strand, within SM_b20483 at 499.191 kb on + strand, within SM_b20483 at 499.192 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.328 kb on + strand, within SM_b20483 at 499.370 kb on + strand, within SM_b20483 at 499.399 kb on - strand, within SM_b20483 at 499.476 kb on - strand at 499.527 kb on + strand at 499.527 kb on + strand at 499.528 kb on - strand at 499.528 kb on - strand at 499.643 kb on + strand at 499.892 kb on + strand at 499.892 kb on + strand at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484 at 500.755 kb on + strand at 501.137 kb on + strand, within SM_b20485 at 501.138 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.191 kb on - strand, within SM_b20485 at 501.324 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.648 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 498,878 + SM_b20483 0.36 +0.9 498,878 + SM_b20483 0.36 -2.4 498,879 - SM_b20483 0.36 +1.2 498,936 - SM_b20483 0.42 -1.7 498,936 - SM_b20483 0.42 +2.3 498,978 + SM_b20483 0.45 -1.6 499,108 + SM_b20483 0.58 -1.7 499,109 - -2.2 499,109 - SM_b20483 0.58 -1.7 499,115 + SM_b20483 0.58 -1.1 499,115 + SM_b20483 0.58 +0.4 499,116 - SM_b20483 0.58 -0.8 499,172 - SM_b20483 0.64 -0.7 499,191 + SM_b20483 0.65 -1.7 499,192 - SM_b20483 0.65 +2.1 499,274 - SM_b20483 0.73 -1.1 499,274 - SM_b20483 0.73 -0.4 499,328 + SM_b20483 0.78 -2.2 499,370 + SM_b20483 0.82 +0.2 499,399 - SM_b20483 0.85 +2.1 499,476 - +0.5 499,527 + -2.5 499,527 + -1.0 499,528 - -1.7 499,528 - +2.1 499,643 + +0.3 499,892 + -0.1 499,892 + -2.4 499,950 + SM_b20484 0.12 -0.8 500,106 + SM_b20484 0.27 +4.3 500,291 + SM_b20484 0.46 +0.6 500,292 - SM_b20484 0.46 -0.2 500,357 + SM_b20484 0.53 +0.9 500,358 - SM_b20484 0.53 -0.1 500,755 + +0.4 501,137 + SM_b20485 0.13 -0.6 501,138 - SM_b20485 0.13 -0.1 501,183 - SM_b20485 0.16 -0.1 501,183 - SM_b20485 0.16 +0.2 501,190 + SM_b20485 0.17 -0.1 501,190 + SM_b20485 0.17 -0.3 501,191 - SM_b20485 0.17 -2.5 501,324 - SM_b20485 0.26 -0.1 501,405 - SM_b20485 0.31 +0.7 501,405 - SM_b20485 0.31 -3.3 501,648 - SM_b20485 0.47 +2.4 501,794 - SM_b20485 0.56 -0.3 501,794 - SM_b20485 0.56 +1.1
Or see this region's nucleotide sequence