Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20450

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20449 and SM_b20450 overlap by 4 nucleotidesSM_b20450 and SM_b20451 are separated by 4 nucleotidesSM_b20451 and SM_b20452 are separated by 14 nucleotidesSM_b20452 and SM_b20453 are separated by 35 nucleotides SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328 _b20449 SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685 _b20450 SM_b20451: SM_b20451 - hypothetical protein, at 464,690 to 465,253 _b20451 SM_b20452: SM_b20452 - hypothetical protein, at 465,268 to 465,606 _b20452 SM_b20453: SM_b20453 - gluconolactonase, at 465,642 to 466,553 _b20453 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 461.351 kb on + strandat 461.351 kb on + strandat 461.352 kb on - strandat 461.498 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.931 kb on - strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.935 kb on - strand, within SM_b20449at 461.996 kb on + strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 462.176 kb on + strand, within SM_b20449at 462.177 kb on - strand, within SM_b20449at 462.195 kb on + strand, within SM_b20449at 462.282 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.519 kb on + strandat 462.530 kb on - strandat 462.530 kb on - strandat 462.880 kb on + strand, within SM_b20450at 462.880 kb on + strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.885 kb on + strand, within SM_b20450at 462.886 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.928 kb on - strand, within SM_b20450at 463.009 kb on + strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.086 kb on + strand, within SM_b20450at 463.218 kb on + strand, within SM_b20450at 463.459 kb on + strand, within SM_b20450at 463.624 kb on + strand, within SM_b20450at 463.624 kb on + strand, within SM_b20450at 463.706 kb on + strand, within SM_b20450at 463.816 kb on - strand, within SM_b20450at 463.975 kb on - strand, within SM_b20450at 463.975 kb on - strand, within SM_b20450at 464.041 kb on + strand, within SM_b20450at 464.041 kb on + strand, within SM_b20450at 464.042 kb on - strand, within SM_b20450at 464.043 kb on + strand, within SM_b20450at 464.043 kb on + strand, within SM_b20450at 464.043 kb on + strand, within SM_b20450at 464.075 kb on - strand, within SM_b20450at 464.075 kb on - strand, within SM_b20450at 464.077 kb on + strand, within SM_b20450at 464.077 kb on + strand, within SM_b20450at 464.177 kb on + strand, within SM_b20450at 464.249 kb on - strand, within SM_b20450at 464.249 kb on - strand, within SM_b20450at 464.490 kb on + strandat 464.700 kb on + strandat 464.700 kb on + strandat 464.700 kb on + strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.701 kb on - strandat 464.702 kb on + strandat 464.702 kb on + strandat 464.702 kb on + strandat 464.703 kb on - strandat 464.703 kb on - strandat 464.703 kb on - strandat 464.886 kb on - strand, within SM_b20451at 465.042 kb on + strand, within SM_b20451at 465.043 kb on - strand, within SM_b20451at 465.043 kb on - strand, within SM_b20451at 465.046 kb on - strand, within SM_b20451at 465.049 kb on - strand, within SM_b20451at 465.082 kb on - strand, within SM_b20451at 465.152 kb on + strand, within SM_b20451at 465.153 kb on - strand, within SM_b20451at 465.218 kb on + strandat 465.218 kb on + strandat 465.218 kb on + strandat 465.218 kb on + strandat 465.218 kb on + strandat 465.219 kb on - strandat 465.219 kb on - strandat 465.219 kb on - strandat 465.227 kb on - strandat 465.319 kb on + strand, within SM_b20452at 465.319 kb on + strand, within SM_b20452at 465.319 kb on + strand, within SM_b20452at 465.320 kb on - strand, within SM_b20452at 465.388 kb on - strand, within SM_b20452at 465.388 kb on - strand, within SM_b20452at 465.513 kb on + strand, within SM_b20452at 465.599 kb on + strandat 465.644 kb on - strandat 465.673 kb on + strandat 465.674 kb on - strandat 465.674 kb on - strandat 465.682 kb on + strandat 465.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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461,351 + -0.5
461,351 + +3.4
461,352 - +1.8
461,498 + SM_b20449 0.22 -0.5
461,646 + SM_b20449 0.36 -0.6
461,646 + SM_b20449 0.36 -0.1
461,646 + SM_b20449 0.36 -2.0
461,646 + SM_b20449 0.36 -0.7
461,646 + SM_b20449 0.36 -0.1
461,646 + SM_b20449 0.36 -1.6
461,646 + SM_b20449 0.36 +0.6
461,646 + SM_b20449 0.36 -3.5
461,646 + SM_b20449 0.36 +0.2
461,646 + SM_b20449 0.36 +0.2
461,646 + SM_b20449 0.36 +2.3
461,646 + SM_b20449 0.36 +0.5
461,647 - SM_b20449 0.36 -0.9
461,647 - SM_b20449 0.36 -1.4
461,647 - SM_b20449 0.36 -0.8
461,647 - SM_b20449 0.36 -0.5
461,647 - SM_b20449 0.36 -1.8
461,647 - SM_b20449 0.36 +1.8
461,647 - SM_b20449 0.36 -1.0
461,786 + SM_b20449 0.49 +4.4
461,786 + SM_b20449 0.49 -0.7
461,786 + SM_b20449 0.49 +0.5
461,786 + SM_b20449 0.49 +0.2
461,786 + SM_b20449 0.49 -1.0
461,788 + SM_b20449 0.49 -1.2
461,788 + SM_b20449 0.49 +0.3
461,788 + SM_b20449 0.49 -1.6
461,788 + SM_b20449 0.49 -1.6
461,788 + SM_b20449 0.49 -0.9
461,789 - SM_b20449 0.49 -0.4
461,789 - SM_b20449 0.49 -1.8
461,789 - SM_b20449 0.49 -0.7
461,789 - SM_b20449 0.49 +2.4
461,792 + SM_b20449 0.49 -0.5
461,792 + SM_b20449 0.49 +2.0
461,792 + SM_b20449 0.49 +0.3
461,793 - SM_b20449 0.49 -0.2
461,793 - SM_b20449 0.49 -1.7
461,793 - SM_b20449 0.49 -0.4
461,931 - SM_b20449 0.62 +0.7
461,932 + SM_b20449 0.63 +0.1
461,932 + SM_b20449 0.63 -1.3
461,932 + SM_b20449 0.63 +0.4
461,932 + SM_b20449 0.63 -0.2
461,932 + SM_b20449 0.63 +3.4
461,933 - SM_b20449 0.63 -0.8
461,933 - SM_b20449 0.63 -0.3
461,933 - SM_b20449 0.63 -1.5
461,933 - SM_b20449 0.63 -1.3
461,934 + SM_b20449 0.63 -2.4
461,934 + SM_b20449 0.63 -3.0
461,935 - SM_b20449 0.63 -1.7
461,996 + SM_b20449 0.69 +0.4
461,997 - SM_b20449 0.69 +0.1
461,997 - SM_b20449 0.69 +0.7
462,176 + SM_b20449 0.86 -0.1
462,177 - SM_b20449 0.86 +1.2
462,195 + SM_b20449 0.87 +0.4
462,282 - -3.9
462,518 - -2.4
462,518 - -1.1
462,518 - +0.4
462,519 + +2.4
462,530 - +0.9
462,530 - +1.2
462,880 + SM_b20450 0.24 -2.9
462,880 + SM_b20450 0.24 -0.8
462,881 - SM_b20450 0.24 -2.3
462,881 - SM_b20450 0.24 +0.2
462,881 - SM_b20450 0.24 -0.3
462,881 - SM_b20450 0.24 -0.8
462,881 - SM_b20450 0.24 -0.3
462,883 + SM_b20450 0.24 -2.8
462,883 + SM_b20450 0.24 +0.2
462,883 + SM_b20450 0.24 -0.2
462,883 + SM_b20450 0.24 -1.7
462,885 + SM_b20450 0.24 +0.3
462,886 - SM_b20450 0.24 +2.1
462,926 - SM_b20450 0.25 -0.4
462,926 - SM_b20450 0.25 -0.5
462,928 - SM_b20450 0.26 -2.0
463,009 + SM_b20450 0.29 +1.8
463,085 - SM_b20450 0.32 +1.4
463,085 - SM_b20450 0.32 -1.3
463,085 - SM_b20450 0.32 +0.7
463,086 + SM_b20450 0.32 -0.8
463,218 + SM_b20450 0.38 -1.9
463,459 + SM_b20450 0.48 -1.7
463,624 + SM_b20450 0.55 -0.3
463,624 + SM_b20450 0.55 -1.0
463,706 + SM_b20450 0.58 -0.7
463,816 - SM_b20450 0.63 -1.5
463,975 - SM_b20450 0.70 -0.6
463,975 - SM_b20450 0.70 -1.8
464,041 + SM_b20450 0.73 +0.4
464,041 + SM_b20450 0.73 +1.8
464,042 - SM_b20450 0.73 +1.9
464,043 + SM_b20450 0.73 +0.4
464,043 + SM_b20450 0.73 +3.5
464,043 + SM_b20450 0.73 -3.1
464,075 - SM_b20450 0.74 +1.8
464,075 - SM_b20450 0.74 -1.6
464,077 + SM_b20450 0.74 -1.9
464,077 + SM_b20450 0.74 -1.2
464,177 + SM_b20450 0.78 -1.1
464,249 - SM_b20450 0.81 +0.1
464,249 - SM_b20450 0.81 -1.4
464,490 + -1.2
464,700 + -1.6
464,700 + -0.2
464,700 + +0.6
464,701 - +1.0
464,701 - +0.8
464,701 - +0.5
464,701 - -1.6
464,701 - -0.4
464,701 - -2.2
464,701 - -0.2
464,702 + -1.8
464,702 + +1.5
464,702 + -1.0
464,703 - -1.1
464,703 - +0.3
464,703 - +0.0
464,886 - SM_b20451 0.35 -0.0
465,042 + SM_b20451 0.62 -0.7
465,043 - SM_b20451 0.63 +1.9
465,043 - SM_b20451 0.63 -0.3
465,046 - SM_b20451 0.63 +1.3
465,049 - SM_b20451 0.64 +1.8
465,082 - SM_b20451 0.70 +2.6
465,152 + SM_b20451 0.82 +0.3
465,153 - SM_b20451 0.82 -0.8
465,218 + +2.5
465,218 + -1.6
465,218 + +1.2
465,218 + +1.3
465,218 + +0.9
465,219 - -0.4
465,219 - +1.5
465,219 - +1.8
465,227 - +0.3
465,319 + SM_b20452 0.15 +0.8
465,319 + SM_b20452 0.15 -1.0
465,319 + SM_b20452 0.15 -2.8
465,320 - SM_b20452 0.15 -2.2
465,388 - SM_b20452 0.35 -1.4
465,388 - SM_b20452 0.35 -0.6
465,513 + SM_b20452 0.72 -2.3
465,599 + +0.4
465,644 - -2.5
465,673 + -0.2
465,674 - -0.5
465,674 - -1.7
465,682 + +0.4
465,683 - -0.2

Or see this region's nucleotide sequence