Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20380 and SM_b20381 are separated by 15 nucleotides SM_b20381 and SM_b20382 overlap by 4 nucleotides SM_b20382 and SM_b20383 are separated by 125 nucleotides
SM_b20380: SM_b20380 - ABC transporter ATP-binding protein, at 391,371 to 392,420
_b20380
SM_b20381: SM_b20381 - ABC transporter permease, at 392,436 to 393,266
_b20381
SM_b20382: SM_b20382 - ABC transporter permease, at 393,263 to 394,114
_b20382
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 391.513 kb on + strand, within SM_b20380 at 391.747 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.363 kb on + strand at 392.364 kb on - strand at 392.364 kb on - strand at 392.377 kb on + strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.559 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.982 kb on - strand, within SM_b20381 at 393.130 kb on + strand, within SM_b20381 at 393.131 kb on - strand, within SM_b20381 at 393.143 kb on + strand, within SM_b20381 at 393.312 kb on + strand at 393.312 kb on + strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.404 kb on + strand, within SM_b20382 at 393.404 kb on + strand, within SM_b20382 at 393.405 kb on - strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.528 kb on + strand, within SM_b20382 at 393.585 kb on + strand at 393.585 kb on + strand, within SM_b20382 at 393.585 kb on + strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.641 kb on - strand, within SM_b20382 at 393.768 kb on + strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.783 kb on + strand, within SM_b20382 at 393.784 kb on - strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 394.014 kb on + strand, within SM_b20382 at 394.015 kb on - strand, within SM_b20382 at 394.196 kb on + strand at 394.241 kb on + strand at 394.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 391,513 + SM_b20380 0.14 -1.0 391,747 + SM_b20380 0.36 +0.6 391,846 + SM_b20380 0.45 +0.7 391,846 + SM_b20380 0.45 +0.3 391,847 - SM_b20380 0.45 +1.1 391,847 - SM_b20380 0.45 -1.5 391,847 - SM_b20380 0.45 -2.9 391,847 - SM_b20380 0.45 +0.3 391,847 - SM_b20380 0.45 -0.3 392,162 - SM_b20380 0.75 -2.0 392,162 - SM_b20380 0.75 +1.4 392,162 - SM_b20380 0.75 -1.3 392,363 + +0.3 392,364 - -0.1 392,364 - -1.2 392,377 + -1.6 392,378 - +1.8 392,378 - +1.0 392,378 - +0.2 392,378 - +0.0 392,378 - +0.5 392,425 - -4.0 392,425 - +0.2 392,425 - -0.2 392,559 + SM_b20381 0.15 +1.4 392,887 + SM_b20381 0.54 -0.2 392,887 + SM_b20381 0.54 -0.1 392,917 + SM_b20381 0.58 -2.1 392,917 + SM_b20381 0.58 +0.1 392,917 + SM_b20381 0.58 +0.5 392,917 + SM_b20381 0.58 -0.7 392,918 - SM_b20381 0.58 -0.5 392,918 - SM_b20381 0.58 +3.6 392,924 - SM_b20381 0.59 +1.0 392,924 - SM_b20381 0.59 -1.2 392,982 - SM_b20381 0.66 +1.0 393,130 + SM_b20381 0.84 +1.3 393,131 - SM_b20381 0.84 +2.9 393,143 + SM_b20381 0.85 +2.3 393,312 + +0.3 393,312 + +0.6 393,313 - +0.5 393,313 - +0.1 393,313 - +0.1 393,404 + SM_b20382 0.17 -0.2 393,404 + SM_b20382 0.17 -0.2 393,405 - SM_b20382 0.17 +0.2 393,459 + SM_b20382 0.23 +1.4 393,459 + SM_b20382 0.23 +3.7 393,459 + SM_b20382 0.23 +0.8 393,459 + SM_b20382 0.23 +0.6 393,460 - SM_b20382 0.23 +0.1 393,460 - SM_b20382 0.23 +0.5 393,528 + SM_b20382 0.31 -3.0 393,585 + -0.8 393,585 + SM_b20382 0.38 -1.3 393,585 + SM_b20382 0.38 -2.6 393,586 - SM_b20382 0.38 +0.5 393,586 - SM_b20382 0.38 +1.8 393,641 - SM_b20382 0.44 -1.0 393,768 + SM_b20382 0.59 +1.0 393,769 - SM_b20382 0.59 +3.1 393,769 - SM_b20382 0.59 +0.8 393,783 + SM_b20382 0.61 +0.6 393,784 - SM_b20382 0.61 -0.3 393,924 + SM_b20382 0.78 -3.5 393,924 + SM_b20382 0.78 -0.9 393,924 + SM_b20382 0.78 +0.1 393,924 + SM_b20382 0.78 -0.1 394,014 + SM_b20382 0.88 -0.4 394,015 - SM_b20382 0.88 -3.5 394,196 + +2.4 394,241 + -0.3 394,241 + -0.1
Or see this region's nucleotide sequence