Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20361 and SM_b20362 are separated by 90 nucleotides SM_b20362 and SM_b20363 are separated by 30 nucleotides SM_b20363 and SM_b20364 overlap by 4 nucleotides
SM_b20361: SM_b20361 - ionic voltage-gated channel protein, at 371,644 to 372,441
_b20361
SM_b20362: SM_b20362 - inositol monophosphatase, at 372,532 to 373,332
_b20362
SM_b20363: SM_b20363 - iron ABC transporter ATP-binding protein, at 373,363 to 374,424
_b20363
SM_b20364: SM_b20364 - iron ABC transporter permease, at 374,421 to 376,649
_b20364
Position (kb) 373
374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 372.435 kb on + strand at 372.436 kb on - strand at 372.636 kb on - strand, within SM_b20362 at 372.695 kb on + strand, within SM_b20362 at 372.696 kb on - strand, within SM_b20362 at 372.704 kb on + strand, within SM_b20362 at 372.704 kb on + strand, within SM_b20362 at 372.704 kb on + strand, within SM_b20362 at 372.705 kb on - strand, within SM_b20362 at 372.707 kb on + strand, within SM_b20362 at 372.734 kb on + strand, within SM_b20362 at 372.734 kb on + strand, within SM_b20362 at 372.735 kb on - strand, within SM_b20362 at 372.735 kb on - strand, within SM_b20362 at 372.735 kb on - strand, within SM_b20362 at 372.744 kb on + strand, within SM_b20362 at 372.744 kb on + strand, within SM_b20362 at 372.744 kb on + strand, within SM_b20362 at 372.830 kb on + strand, within SM_b20362 at 372.830 kb on + strand, within SM_b20362 at 372.830 kb on + strand, within SM_b20362 at 372.830 kb on + strand, within SM_b20362 at 372.831 kb on - strand, within SM_b20362 at 372.831 kb on - strand, within SM_b20362 at 372.831 kb on - strand, within SM_b20362 at 373.101 kb on - strand, within SM_b20362 at 373.333 kb on - strand at 373.488 kb on - strand, within SM_b20363 at 373.509 kb on - strand, within SM_b20363 at 373.509 kb on - strand, within SM_b20363 at 373.844 kb on + strand, within SM_b20363 at 374.098 kb on - strand, within SM_b20363 at 374.117 kb on + strand, within SM_b20363 at 374.160 kb on - strand, within SM_b20363 at 374.205 kb on + strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.383 kb on + strand at 374.383 kb on + strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.609 kb on + strand at 374.612 kb on - strand at 374.612 kb on - strand at 374.612 kb on - strand at 374.923 kb on + strand, within SM_b20364 at 374.923 kb on + strand, within SM_b20364 at 375.020 kb on - strand, within SM_b20364 at 375.157 kb on + strand, within SM_b20364 at 375.157 kb on + strand, within SM_b20364 at 375.158 kb on - strand, within SM_b20364 at 375.158 kb on - strand at 375.158 kb on - strand, within SM_b20364
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 372,435 + +0.0 372,436 - -0.3 372,636 - SM_b20362 0.13 -2.5 372,695 + SM_b20362 0.20 -0.6 372,696 - SM_b20362 0.20 -0.5 372,704 + SM_b20362 0.21 -1.1 372,704 + SM_b20362 0.21 +1.4 372,704 + SM_b20362 0.21 +5.7 372,705 - SM_b20362 0.22 +1.6 372,707 + SM_b20362 0.22 +0.1 372,734 + SM_b20362 0.25 +0.8 372,734 + SM_b20362 0.25 +1.7 372,735 - SM_b20362 0.25 +0.1 372,735 - SM_b20362 0.25 -0.6 372,735 - SM_b20362 0.25 -0.1 372,744 + SM_b20362 0.26 -0.9 372,744 + SM_b20362 0.26 -1.8 372,744 + SM_b20362 0.26 -0.2 372,830 + SM_b20362 0.37 +4.4 372,830 + SM_b20362 0.37 -1.5 372,830 + SM_b20362 0.37 -0.2 372,830 + SM_b20362 0.37 -1.4 372,831 - SM_b20362 0.37 -3.6 372,831 - SM_b20362 0.37 +0.6 372,831 - SM_b20362 0.37 +0.2 373,101 - SM_b20362 0.71 +0.1 373,333 - +2.7 373,488 - SM_b20363 0.12 -0.3 373,509 - SM_b20363 0.14 +1.4 373,509 - SM_b20363 0.14 -3.5 373,844 + SM_b20363 0.45 -1.1 374,098 - SM_b20363 0.69 +2.4 374,117 + SM_b20363 0.71 -0.8 374,160 - SM_b20363 0.75 +1.8 374,205 + SM_b20363 0.79 -4.4 374,206 - SM_b20363 0.79 -1.1 374,206 - SM_b20363 0.79 -2.4 374,206 - SM_b20363 0.79 -0.8 374,383 + +1.9 374,383 + +0.4 374,384 - +0.7 374,384 - +1.5 374,384 - +0.5 374,384 - +1.7 374,384 - -0.3 374,609 + +1.2 374,612 - -2.3 374,612 - +1.6 374,612 - -0.5 374,923 + SM_b20364 0.23 +5.0 374,923 + SM_b20364 0.23 -0.3 375,020 - SM_b20364 0.27 -2.0 375,157 + SM_b20364 0.33 +0.8 375,157 + SM_b20364 0.33 +0.4 375,158 - SM_b20364 0.33 +2.3 375,158 - -2.2 375,158 - SM_b20364 0.33 -0.1
Or see this region's nucleotide sequence