Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20333 and SM_b20334 are separated by 615 nucleotides SM_b20334 and SM_b20335 are separated by 220 nucleotides
SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849
_b20333
SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376
_b20334
SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877
_b20335
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.521 kb on - strand, within SM_b20333 at 338.521 kb on - strand, within SM_b20333 at 338.558 kb on - strand, within SM_b20333 at 338.638 kb on - strand at 338.679 kb on + strand at 338.792 kb on + strand at 338.795 kb on + strand at 339.033 kb on + strand at 339.085 kb on + strand at 339.226 kb on + strand at 339.259 kb on + strand at 339.259 kb on + strand at 339.280 kb on + strand at 339.281 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.683 kb on - strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.755 kb on - strand, within SM_b20334 at 339.843 kb on + strand, within SM_b20334 at 339.844 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 340.022 kb on + strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.086 kb on + strand, within SM_b20334 at 340.087 kb on - strand, within SM_b20334 at 340.126 kb on - strand, within SM_b20334 at 340.281 kb on + strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.375 kb on - strand at 340.405 kb on - strand at 340.459 kb on + strand at 340.460 kb on - strand at 340.460 kb on - strand at 340.475 kb on + strand at 340.619 kb on + strand at 340.620 kb on - strand at 340.646 kb on + strand at 340.652 kb on - strand at 341.065 kb on + strand, within SM_b20335 at 341.065 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.170 kb on - strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.195 kb on - strand, within SM_b20335 at 341.277 kb on + strand, within SM_b20335
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 338,521 - SM_b20333 0.84 +1.4 338,521 - SM_b20333 0.84 +0.8 338,558 - SM_b20333 0.86 +1.1 338,638 - +0.8 338,679 + -2.6 338,792 + +1.8 338,795 + -1.2 339,033 + +0.6 339,085 + +2.9 339,226 + -0.2 339,259 + -0.9 339,259 + -0.4 339,280 + -0.3 339,281 - -0.4 339,284 - +1.0 339,284 - +0.8 339,284 - -1.5 339,683 - SM_b20334 0.24 -0.8 339,737 + SM_b20334 0.30 -0.6 339,737 + SM_b20334 0.30 -0.6 339,738 - SM_b20334 0.30 -1.0 339,738 - SM_b20334 0.30 -0.4 339,739 + SM_b20334 0.30 -3.0 339,739 + SM_b20334 0.30 -0.1 339,740 - SM_b20334 0.30 -0.5 339,740 - SM_b20334 0.30 -0.0 339,755 - SM_b20334 0.32 +0.5 339,843 + SM_b20334 0.41 -0.0 339,844 - SM_b20334 0.42 -0.5 339,862 - SM_b20334 0.44 +1.5 339,862 - SM_b20334 0.44 -1.9 339,989 + SM_b20334 0.57 +0.3 339,989 + SM_b20334 0.57 +0.3 339,989 + SM_b20334 0.57 +0.5 340,022 + SM_b20334 0.61 +0.7 340,023 - SM_b20334 0.61 +0.2 340,023 - SM_b20334 0.61 -0.5 340,086 + SM_b20334 0.68 +0.8 340,087 - SM_b20334 0.68 -1.2 340,126 - SM_b20334 0.72 +0.9 340,281 + SM_b20334 0.89 +0.3 340,282 - SM_b20334 0.90 -1.1 340,282 - SM_b20334 0.90 -0.5 340,282 - SM_b20334 0.90 +0.5 340,375 - +0.9 340,405 - +0.8 340,459 + -0.3 340,460 - +0.2 340,460 - -1.1 340,475 + +0.2 340,619 + -0.2 340,620 - +0.6 340,646 + -1.7 340,652 - +0.4 341,065 + SM_b20335 0.37 -0.1 341,065 + SM_b20335 0.37 -0.7 341,127 + SM_b20335 0.41 +0.7 341,127 + SM_b20335 0.41 -2.9 341,127 + SM_b20335 0.41 -3.2 341,127 + SM_b20335 0.41 -1.0 341,127 + SM_b20335 0.41 +0.0 341,127 + SM_b20335 0.41 +0.3 341,127 + SM_b20335 0.41 +2.1 341,128 - SM_b20335 0.41 +1.5 341,128 - SM_b20335 0.41 -1.6 341,128 - SM_b20335 0.41 +1.0 341,128 - SM_b20335 0.41 -1.6 341,128 - SM_b20335 0.41 -0.5 341,169 + SM_b20335 0.45 +0.0 341,169 + SM_b20335 0.45 +1.2 341,170 - SM_b20335 0.45 +1.0 341,173 + SM_b20335 0.45 -0.4 341,173 + SM_b20335 0.45 -0.8 341,173 + SM_b20335 0.45 +0.2 341,173 + SM_b20335 0.45 +0.1 341,195 - SM_b20335 0.47 +1.9 341,277 + SM_b20335 0.53 +0.2
Or see this region's nucleotide sequence