Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20270 and SM_b20271 are separated by 83 nucleotides SM_b20271 and SM_b20272 are separated by 400 nucleotides SM_b20272 and SM_b20273 are separated by 72 nucleotides SM_b20273 and SM_b20274 are separated by 255 nucleotides SM_b20274 and SM_b20275 are separated by 177 nucleotides
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977
_b20271
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
SM_b20273: SM_b20273 - hypothetical protein, at 278,659 to 278,844
_b20273
SM_b20274: SM_b20274 - hypothetical protein, at 279,100 to 279,285
_b20274
SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323
_b20275
Position (kb) 277
278
279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 276.378 kb on + strand at 276.641 kb on + strand, within SM_b20271 at 277.087 kb on + strand at 277.088 kb on - strand at 277.265 kb on + strand at 277.265 kb on + strand at 277.266 kb on - strand at 277.266 kb on - strand at 277.394 kb on - strand at 277.512 kb on + strand, within SM_b20272 at 277.513 kb on - strand, within SM_b20272 at 277.514 kb on + strand, within SM_b20272 at 277.560 kb on + strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.849 kb on - strand, within SM_b20272 at 277.855 kb on + strand, within SM_b20272 at 277.856 kb on - strand, within SM_b20272 at 277.883 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 278.030 kb on + strand, within SM_b20272 at 278.031 kb on - strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.323 kb on + strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.462 kb on - strand, within SM_b20272 at 278.479 kb on + strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.491 kb on + strand at 278.492 kb on - strand at 278.667 kb on + strand at 278.725 kb on + strand, within SM_b20273 at 278.727 kb on + strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 279.045 kb on - strand at 279.102 kb on - strand at 279.138 kb on - strand, within SM_b20274 at 279.189 kb on - strand, within SM_b20274 at 279.206 kb on - strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.227 kb on - strand, within SM_b20274 at 279.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 276,378 + -0.9 276,641 + SM_b20271 0.22 -0.0 277,087 + +0.0 277,088 - +0.3 277,265 + -1.8 277,265 + -1.0 277,266 - -2.0 277,266 - -0.1 277,394 - -0.2 277,512 + SM_b20272 0.11 -1.4 277,513 - SM_b20272 0.11 -0.9 277,514 + SM_b20272 0.11 -2.8 277,560 + SM_b20272 0.15 -2.3 277,561 - SM_b20272 0.15 +0.0 277,561 - SM_b20272 0.15 -1.7 277,561 - SM_b20272 0.15 +0.8 277,561 - SM_b20272 0.15 +0.2 277,782 - SM_b20272 0.33 +0.2 277,782 - SM_b20272 0.33 +1.8 277,849 - SM_b20272 0.39 -3.1 277,855 + SM_b20272 0.39 +0.1 277,856 - SM_b20272 0.40 -1.5 277,883 + SM_b20272 0.42 -0.5 277,953 + SM_b20272 0.48 +1.8 277,953 + SM_b20272 0.48 -1.0 278,030 + SM_b20272 0.54 +0.2 278,031 - SM_b20272 0.54 -2.0 278,095 + SM_b20272 0.59 -0.5 278,095 + SM_b20272 0.59 -1.9 278,323 + SM_b20272 0.78 +2.7 278,324 - SM_b20272 0.78 +1.0 278,324 - SM_b20272 0.78 +0.3 278,461 + SM_b20272 0.90 -1.9 278,461 + SM_b20272 0.90 +0.5 278,462 - SM_b20272 0.90 -0.9 278,479 + -3.2 278,480 - +0.7 278,480 - +0.1 278,480 - -0.4 278,491 + -1.1 278,492 - -0.0 278,667 + -1.7 278,725 + SM_b20273 0.35 -0.1 278,727 + SM_b20273 0.37 +0.9 278,728 - SM_b20273 0.37 -3.4 278,728 - SM_b20273 0.37 -2.0 279,045 - +0.6 279,102 - +0.2 279,138 - SM_b20274 0.20 +0.1 279,189 - SM_b20274 0.48 -1.1 279,206 - SM_b20274 0.57 -0.1 279,217 + SM_b20274 0.63 -4.6 279,217 + SM_b20274 0.63 +0.7 279,227 - SM_b20274 0.68 +1.5 279,334 - +0.8
Or see this region's nucleotide sequence