Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20249 and SM_b20250 overlap by 4 nucleotides SM_b20250 and SM_b20251 are separated by 71 nucleotides
SM_b20249: SM_b20249 - myo-inositol-1-phosphate synthase, at 255,238 to 256,341
_b20249
SM_b20250: SM_b20250 - hypothetical protein, at 256,338 to 256,937
_b20250
SM_b20251: SM_b20251 - hypothetical protein, at 257,009 to 257,971
_b20251
SM_b20252: SM_b20252 - hypothetical protein, at 257,884 to 259,248
_b20252
Position (kb) 256
257 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 255.457 kb on + strand, within SM_b20249 at 255.458 kb on - strand, within SM_b20249 at 255.640 kb on + strand, within SM_b20249 at 255.641 kb on - strand, within SM_b20249 at 255.676 kb on + strand, within SM_b20249 at 255.801 kb on - strand, within SM_b20249 at 255.872 kb on + strand, within SM_b20249 at 255.873 kb on - strand, within SM_b20249 at 255.873 kb on - strand, within SM_b20249 at 255.884 kb on - strand, within SM_b20249 at 255.906 kb on + strand, within SM_b20249 at 256.067 kb on - strand, within SM_b20249 at 256.067 kb on - strand, within SM_b20249 at 256.068 kb on + strand, within SM_b20249 at 256.234 kb on + strand at 256.238 kb on + strand at 256.417 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.664 kb on + strand, within SM_b20250 at 256.664 kb on + strand, within SM_b20250 at 257.004 kb on + strand at 257.004 kb on + strand at 257.005 kb on - strand at 257.099 kb on - strand at 257.198 kb on - strand, within SM_b20251 at 257.525 kb on + strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.608 kb on - strand, within SM_b20251 at 257.667 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 255,457 + SM_b20249 0.20 +0.1 255,458 - SM_b20249 0.20 -2.4 255,640 + SM_b20249 0.36 +0.1 255,641 - SM_b20249 0.37 +0.2 255,676 + SM_b20249 0.40 +0.2 255,801 - SM_b20249 0.51 -0.3 255,872 + SM_b20249 0.57 +0.5 255,873 - SM_b20249 0.58 +0.2 255,873 - SM_b20249 0.58 -0.1 255,884 - SM_b20249 0.59 -0.2 255,906 + SM_b20249 0.61 +0.1 256,067 - SM_b20249 0.75 +1.1 256,067 - SM_b20249 0.75 +1.3 256,068 + SM_b20249 0.75 +0.2 256,234 + -1.9 256,238 + +1.4 256,417 + SM_b20250 0.13 -0.8 256,494 + SM_b20250 0.26 -0.2 256,494 + SM_b20250 0.26 -0.2 256,494 + SM_b20250 0.26 -1.4 256,664 + SM_b20250 0.54 +0.3 256,664 + SM_b20250 0.54 -4.2 257,004 + -0.3 257,004 + +0.5 257,005 - +0.6 257,099 - -0.5 257,198 - SM_b20251 0.20 -0.9 257,525 + SM_b20251 0.54 -1.0 257,526 - SM_b20251 0.54 +0.5 257,526 - SM_b20251 0.54 -1.7 257,608 - SM_b20251 0.62 -1.1 257,667 + SM_b20251 0.68 +0.7 257,678 + SM_b20251 0.69 -0.7 257,678 + SM_b20251 0.69 -0.4
Or see this region's nucleotide sequence