Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20123 and SM_b20124 are separated by 121 nucleotides SM_b20124 and SM_b20125 are separated by 9 nucleotides SM_b20125 and SM_b20126 are separated by 8 nucleotides
SM_b20123: SM_b20123 - transcriptional regulator, at 134,261 to 135,157
_b20123
SM_b20124: SM_b20124 - sugar ABC transporter ATP-binding protein, at 135,279 to 136,805
_b20124
SM_b20125: SM_b20125 - sugar ABC transporter permease, at 136,815 to 137,747
_b20125
SM_b20126: SM_b20126 - sugar ABC transporter permease, at 137,756 to 138,853
_b20126
Position (kb) 135
136
137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 134.496 kb on + strand, within SM_b20123 at 134.497 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.922 kb on - strand, within SM_b20123 at 135.070 kb on + strand at 135.098 kb on + strand at 135.162 kb on - strand at 135.253 kb on - strand at 135.376 kb on + strand at 135.376 kb on + strand at 135.376 kb on + strand at 135.377 kb on - strand at 135.377 kb on - strand at 135.377 kb on - strand at 135.516 kb on - strand, within SM_b20124 at 135.792 kb on - strand, within SM_b20124 at 135.821 kb on - strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.973 kb on - strand at 135.973 kb on - strand, within SM_b20124 at 136.069 kb on + strand, within SM_b20124 at 136.070 kb on - strand, within SM_b20124 at 136.140 kb on - strand, within SM_b20124 at 136.334 kb on - strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.450 kb on - strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.828 kb on + strand at 136.875 kb on + strand at 136.875 kb on + strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.924 kb on + strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 137.145 kb on - strand, within SM_b20125 at 137.249 kb on - strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.291 kb on - strand, within SM_b20125 at 137.732 kb on + strand at 137.732 kb on + strand at 137.733 kb on - strand at 137.736 kb on + strand at 137.736 kb on + strand at 137.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 134,496 + SM_b20123 0.26 +1.0 134,497 - SM_b20123 0.26 +1.8 134,793 - SM_b20123 0.59 -1.7 134,793 - SM_b20123 0.59 -0.6 134,922 - SM_b20123 0.74 +1.8 135,070 + +0.5 135,098 + -1.4 135,162 - -4.7 135,253 - +1.6 135,376 + +1.7 135,376 + +0.5 135,376 + -0.6 135,377 - +1.4 135,377 - +2.0 135,377 - -2.2 135,516 - SM_b20124 0.16 +1.7 135,792 - SM_b20124 0.34 +0.8 135,821 - SM_b20124 0.35 +0.5 135,972 + SM_b20124 0.45 +0.5 135,972 + SM_b20124 0.45 +0.1 135,973 - +1.8 135,973 - SM_b20124 0.45 +1.5 136,069 + SM_b20124 0.52 -1.9 136,070 - SM_b20124 0.52 +0.6 136,140 - SM_b20124 0.56 -1.5 136,334 - SM_b20124 0.69 +1.0 136,449 + SM_b20124 0.77 +0.8 136,449 + SM_b20124 0.77 -1.0 136,450 - SM_b20124 0.77 +0.2 136,494 + SM_b20124 0.80 +2.3 136,494 + SM_b20124 0.80 +0.3 136,501 + SM_b20124 0.80 -2.6 136,501 + SM_b20124 0.80 -0.2 136,501 + SM_b20124 0.80 +0.0 136,590 + SM_b20124 0.86 -0.3 136,590 + SM_b20124 0.86 +2.1 136,590 + SM_b20124 0.86 +0.7 136,591 - SM_b20124 0.86 +0.4 136,591 - SM_b20124 0.86 -0.6 136,828 + -1.5 136,875 + -1.6 136,875 + -1.0 136,876 - +2.6 136,876 - -2.5 136,876 - -0.2 136,924 + SM_b20125 0.12 -1.9 136,973 - SM_b20125 0.17 -0.8 136,973 - SM_b20125 0.17 +1.2 136,973 - SM_b20125 0.17 +1.3 136,973 - SM_b20125 0.17 -0.3 137,145 - SM_b20125 0.35 -2.0 137,249 - SM_b20125 0.47 -0.2 137,290 + SM_b20125 0.51 +0.1 137,290 + SM_b20125 0.51 +0.3 137,291 - SM_b20125 0.51 -0.2 137,732 + -1.1 137,732 + +0.3 137,733 - -0.2 137,736 + -0.4 137,736 + +0.0 137,736 + -0.7
Or see this region's nucleotide sequence