Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20092 and SM_b20093 are separated by 37 nucleotides SM_b20093 and SM_b20094 overlap by 106 nucleotides SM_b20094 and SM_b20095 are separated by 24 nucleotides
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
SM_b20093: SM_b20093 - hypothetical protein, at 100,574 to 101,515
_b20093
SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182
_b20094
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 100.487 kb on + strand at 100.641 kb on - strand at 100.661 kb on - strand at 100.742 kb on + strand, within SM_b20093 at 100.742 kb on + strand, within SM_b20093 at 100.743 kb on - strand, within SM_b20093 at 101.094 kb on - strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.411 kb on + strand at 101.641 kb on + strand, within SM_b20094 at 101.907 kb on + strand, within SM_b20094 at 102.140 kb on + strand, within SM_b20094 at 102.140 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.156 kb on - strand, within SM_b20094 at 102.156 kb on - strand, within SM_b20094 at 102.339 kb on + strand, within SM_b20094 at 102.787 kb on + strand, within SM_b20094 at 102.834 kb on + strand, within SM_b20094 at 102.835 kb on - strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.929 kb on - strand, within SM_b20094 at 103.001 kb on - strand, within SM_b20094 at 103.007 kb on + strand at 103.007 kb on + strand at 103.141 kb on + strand at 103.141 kb on + strand at 103.141 kb on + strand at 103.142 kb on - strand at 103.142 kb on - strand at 103.207 kb on - strand at 103.207 kb on - strand at 103.207 kb on - strand at 103.463 kb on - strand, within SM_b20095 at 103.513 kb on + strand, within SM_b20095 at 103.514 kb on - strand, within SM_b20095 at 103.585 kb on + strand, within SM_b20095 at 103.982 kb on + strand, within SM_b20095 at 104.056 kb on + strand, within SM_b20095 at 104.058 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 100,487 + -1.7 100,641 - +1.1 100,661 - +0.6 100,742 + SM_b20093 0.18 -1.8 100,742 + SM_b20093 0.18 +1.3 100,743 - SM_b20093 0.18 +0.5 101,094 - SM_b20093 0.55 +0.6 101,282 + SM_b20093 0.75 +0.0 101,282 + SM_b20093 0.75 -0.9 101,283 - SM_b20093 0.75 -1.9 101,283 - SM_b20093 0.75 +1.2 101,283 - SM_b20093 0.75 +0.7 101,411 + +0.7 101,641 + SM_b20094 0.13 -0.1 101,907 + SM_b20094 0.28 -0.5 102,140 + SM_b20094 0.41 +1.0 102,140 + SM_b20094 0.41 -2.3 102,155 + SM_b20094 0.42 -2.0 102,155 + SM_b20094 0.42 +0.3 102,155 + SM_b20094 0.42 +0.5 102,156 - SM_b20094 0.42 -3.3 102,156 - SM_b20094 0.42 +1.6 102,339 + SM_b20094 0.52 -0.5 102,787 + SM_b20094 0.78 +0.3 102,834 + SM_b20094 0.80 +1.0 102,835 - SM_b20094 0.80 -0.3 102,851 + SM_b20094 0.81 +2.9 102,851 + SM_b20094 0.81 -0.2 102,851 + SM_b20094 0.81 -0.8 102,851 + SM_b20094 0.81 -0.6 102,851 + SM_b20094 0.81 +0.7 102,851 + SM_b20094 0.81 +0.8 102,851 + SM_b20094 0.81 -0.1 102,851 + SM_b20094 0.81 -0.2 102,852 - SM_b20094 0.81 +0.7 102,852 - SM_b20094 0.81 +0.1 102,852 - SM_b20094 0.81 +1.4 102,852 - SM_b20094 0.81 +0.4 102,852 - SM_b20094 0.81 +0.7 102,852 - SM_b20094 0.81 -1.2 102,852 - SM_b20094 0.81 -1.9 102,852 - SM_b20094 0.81 -1.0 102,852 - SM_b20094 0.81 +0.6 102,929 - SM_b20094 0.86 -0.1 103,001 - SM_b20094 0.90 -0.1 103,007 + +0.6 103,007 + -2.1 103,141 + -0.1 103,141 + -0.1 103,141 + +4.1 103,142 - +0.3 103,142 - -0.0 103,207 - -1.3 103,207 - +0.1 103,207 - -2.5 103,463 - SM_b20095 0.14 -1.8 103,513 + SM_b20095 0.17 +0.8 103,514 - SM_b20095 0.17 +0.9 103,585 + SM_b20095 0.21 -0.3 103,982 + SM_b20095 0.43 +1.3 104,056 + SM_b20095 0.47 +1.8 104,058 + SM_b20095 0.47 -1.0 104,065 + SM_b20095 0.47 +0.1 104,065 + SM_b20095 0.47 -0.5 104,065 + SM_b20095 0.47 -1.3
Or see this region's nucleotide sequence