Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20063 and SM_b20064 overlap by 79 nucleotides SM_b20064 and SM_b20065 are separated by 551 nucleotides SM_b20065 and SM_b20066 are separated by 166 nucleotides SM_b20066 and SM_b20067 are separated by 3 nucleotides
SM_b20063: SM_b20063 - hypothetical protein, at 72,756 to 73,052
_b20063
SM_b20064: SM_b20064 - hypothetical protein, at 72,974 to 73,420
_b20064
SM_b20065: SM_b20065 - hypothetical protein, at 73,972 to 74,370
_b20065
SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722
_b20066
SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247
_b20067
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 73.094 kb on - strand, within SM_b20064 at 73.102 kb on + strand, within SM_b20064 at 73.102 kb on + strand, within SM_b20064 at 73.103 kb on - strand, within SM_b20064 at 73.116 kb on + strand, within SM_b20064 at 73.117 kb on - strand, within SM_b20064 at 73.117 kb on - strand, within SM_b20064 at 73.205 kb on + strand, within SM_b20064 at 73.206 kb on - strand, within SM_b20064 at 73.207 kb on + strand, within SM_b20064 at 73.208 kb on - strand, within SM_b20064 at 73.208 kb on - strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.271 kb on - strand, within SM_b20064 at 73.271 kb on - strand, within SM_b20064 at 73.272 kb on + strand, within SM_b20064 at 73.650 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.753 kb on - strand at 73.757 kb on - strand at 73.849 kb on + strand at 73.971 kb on + strand at 73.971 kb on + strand at 73.972 kb on - strand at 73.972 kb on - strand at 74.260 kb on + strand at 74.395 kb on - strand at 74.412 kb on - strand at 74.611 kb on - strand at 74.832 kb on + strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.930 kb on - strand, within SM_b20067 at 75.088 kb on + strand, within SM_b20067 at 75.089 kb on - strand, within SM_b20067 at 75.119 kb on + strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 73,094 - SM_b20064 0.27 +1.9 73,102 + SM_b20064 0.29 +0.3 73,102 + SM_b20064 0.29 -0.5 73,103 - SM_b20064 0.29 +1.8 73,116 + SM_b20064 0.32 -0.4 73,117 - SM_b20064 0.32 +0.5 73,117 - SM_b20064 0.32 +1.1 73,205 + SM_b20064 0.52 +0.8 73,206 - SM_b20064 0.52 +0.0 73,207 + SM_b20064 0.52 +0.5 73,208 - SM_b20064 0.52 +1.8 73,208 - SM_b20064 0.52 -0.3 73,270 + SM_b20064 0.66 -2.2 73,270 + SM_b20064 0.66 +1.6 73,270 + SM_b20064 0.66 -0.5 73,271 - SM_b20064 0.66 -1.8 73,271 - SM_b20064 0.66 -1.4 73,272 + SM_b20064 0.67 -0.3 73,650 + -1.5 73,752 + -1.1 73,752 + +1.8 73,752 + +0.4 73,752 + +1.4 73,752 + +1.1 73,753 - +0.5 73,757 - +3.4 73,849 + +2.0 73,971 + -0.4 73,971 + -1.3 73,972 - -2.4 73,972 - -1.5 74,260 + -0.5 74,395 - -1.4 74,412 - -0.6 74,611 - +1.8 74,832 + SM_b20067 0.20 +1.6 74,833 - SM_b20067 0.20 +0.4 74,833 - SM_b20067 0.20 -0.7 74,930 - SM_b20067 0.39 -0.4 75,088 + SM_b20067 0.69 +0.5 75,089 - SM_b20067 0.70 +0.1 75,119 + SM_b20067 0.75 +0.8 75,134 - SM_b20067 0.78 +0.1 75,134 - SM_b20067 0.78 +0.1
Or see this region's nucleotide sequence