Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20059

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20057 and SM_b20058 overlap by 4 nucleotidesSM_b20058 and SM_b20059 are separated by 3 nucleotidesSM_b20059 and SM_b20060 are separated by 91 nucleotides SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751 _b20057 SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548 _b20058 SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331 _b20059 SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619 _b20060 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 68.723 kb on + strandat 69.594 kb on + strandat 69.595 kb on - strandat 69.857 kb on - strand, within SM_b20059at 69.897 kb on + strand, within SM_b20059at 69.897 kb on + strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 70.096 kb on - strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.330 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
68,723 + -0.2
69,594 + +0.9
69,595 - +1.1
69,857 - SM_b20059 0.39 -3.4
69,897 + SM_b20059 0.44 -1.9
69,897 + SM_b20059 0.44 +4.6
69,898 - SM_b20059 0.44 +0.6
69,898 - SM_b20059 0.44 +0.2
69,898 - SM_b20059 0.44 +0.2
70,096 - SM_b20059 0.70 +1.2
70,210 + SM_b20059 0.84 -0.5
70,210 + SM_b20059 0.84 +0.1
70,210 + SM_b20059 0.84 +0.1
70,330 - +1.0

Or see this region's nucleotide sequence