Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2305

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C
2,729,531	+				-0.6
2,729,531	+				+0.1
2,729,532	-				+1.4
2,729,532	-				-0.5
2,729,612	+				-0.1
2,729,612	+				+1.4
2,729,640	-				+1.2
2,729,787	+				+1.4
2,729,787	+				-1.5
2,729,788	-				+0.2
2,729,788	-				-0.1
2,729,788	-				-0.4
2,729,788	-				-0.6
2,729,999	+		Pf6N2E2_2304	0.37	+1.4
2,729,999	+		Pf6N2E2_2304	0.37	-0.8
2,729,999	+		Pf6N2E2_2304	0.37	+0.5
2,730,000	-		Pf6N2E2_2304	0.38	-0.9
2,730,000	-		Pf6N2E2_2304	0.38	+0.6
2,730,000	-		Pf6N2E2_2304	0.38	-0.6
2,730,000	-		Pf6N2E2_2304	0.38	+0.8
2,730,000	-		Pf6N2E2_2304	0.38	-1.1
2,730,000	-		Pf6N2E2_2304	0.38	-0.7
2,730,064	-		Pf6N2E2_2304	0.47	-0.0
2,730,064	-		Pf6N2E2_2304	0.47	+2.4
2,730,111	-		Pf6N2E2_2304	0.54	+2.1
2,730,128	+		Pf6N2E2_2304	0.56	+1.4
2,730,129	-		Pf6N2E2_2304	0.56	+0.9
2,730,210	-		Pf6N2E2_2304	0.68	+0.2
2,730,210	-		Pf6N2E2_2304	0.68	+0.4
2,730,210	-		Pf6N2E2_2304	0.68	-0.2
2,730,456	+				+1.0
2,730,456	+				+1.1
2,730,540	+				+0.7
2,730,541	-				+1.1
2,730,554	-				+0.1
2,730,559	+				-0.2
2,730,559	+				+0.6
2,730,559	+				+0.9
2,730,560	-				+1.4
2,730,560	-				+0.5
2,730,560	-				+0.5
2,730,585	+				+0.4
2,730,586	-				+0.0
2,730,586	-				+0.9
2,730,763	+		Pf6N2E2_2305	0.16	+1.3
2,730,764	-		Pf6N2E2_2305	0.16	+0.7
2,730,764	-		Pf6N2E2_2305	0.16	+1.6
2,730,764	-		Pf6N2E2_2305	0.16	+0.1
2,730,877	+		Pf6N2E2_2305	0.24	+0.8
2,730,895	+		Pf6N2E2_2305	0.26	+1.4
2,731,000	+		Pf6N2E2_2305	0.33	+0.6
2,731,000	+		Pf6N2E2_2305	0.33	+1.8
2,731,000	+		Pf6N2E2_2305	0.33	+1.0
2,731,001	-		Pf6N2E2_2305	0.33	+0.7
2,731,001	-		Pf6N2E2_2305	0.33	-0.1
2,731,001	-		Pf6N2E2_2305	0.33	-0.2
2,731,001	-		Pf6N2E2_2305	0.33	+0.9
2,731,001	-		Pf6N2E2_2305	0.33	+2.4
2,731,001	-		Pf6N2E2_2305	0.33	+0.5
2,731,001	-		Pf6N2E2_2305	0.33	-0.3
2,731,001	-		Pf6N2E2_2305	0.33	-0.7
2,731,009	-		Pf6N2E2_2305	0.34	+1.4
2,731,009	-		Pf6N2E2_2305	0.34	+1.4
2,731,096	+		Pf6N2E2_2305	0.40	-0.5
2,731,142	-		Pf6N2E2_2305	0.43	+1.3
2,731,195	+		Pf6N2E2_2305	0.47	+1.2
2,731,196	-		Pf6N2E2_2305	0.47	+1.1
2,731,196	-				+0.4
2,731,196	-		Pf6N2E2_2305	0.47	+0.9
2,731,198	+		Pf6N2E2_2305	0.47	+0.1
2,731,199	-		Pf6N2E2_2305	0.47	+1.3
2,731,199	-		Pf6N2E2_2305	0.47	+0.9
2,731,231	+		Pf6N2E2_2305	0.49	-0.2
2,731,232	-		Pf6N2E2_2305	0.49	+0.4
2,731,279	+		Pf6N2E2_2305	0.53	+0.0
2,731,279	+		Pf6N2E2_2305	0.53	+1.5
2,731,280	-		Pf6N2E2_2305	0.53	-0.3
2,731,280	-		Pf6N2E2_2305	0.53	+0.3
2,731,280	-		Pf6N2E2_2305	0.53	+1.9
2,731,310	-		Pf6N2E2_2305	0.55	+0.3
2,731,478	-				+0.4
2,731,540	+		Pf6N2E2_2305	0.71	+1.1
2,731,565	+		Pf6N2E2_2305	0.73	+0.1
2,731,615	+		Pf6N2E2_2305	0.76	-0.9
2,731,616	-		Pf6N2E2_2305	0.76	+0.2
2,731,712	-		Pf6N2E2_2305	0.83	+0.7
2,731,789	+		Pf6N2E2_2305	0.88	+2.4
2,731,790	-		Pf6N2E2_2305	0.88	+0.6
2,731,790	-		Pf6N2E2_2305	0.88	+1.3
2,731,885	+				+0.7
2,731,885	+				+0.1
2,731,885	+				+1.9
2,731,886	-				+1.4
2,732,138	+		Pf6N2E2_2306	0.29	+0.8
2,732,138	+		Pf6N2E2_2306	0.29	+1.8
2,732,138	+		Pf6N2E2_2306	0.29	-0.8
2,732,138	+		Pf6N2E2_2306	0.29	+1.3
2,732,139	-		Pf6N2E2_2306	0.29	-1.2
2,732,336	+		Pf6N2E2_2306	0.61	+0.8
2,732,337	-		Pf6N2E2_2306	0.61	+0.6
2,732,594	-				+0.5
2,732,594	-				+1.0
2,732,662	-		Pf6N2E2_2307	0.34	+0.6
2,732,793	+				+0.8
2,732,793	+				+0.4
2,732,793	+				+1.5
2,732,794	-				-0.6
2,732,924	-		Pf6N2E2_2308	0.15	+0.4
2,732,924	-		Pf6N2E2_2308	0.15	+1.6