Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5843

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
6,658,729	+		Pf6N2E2_5841	0.84	-0.1
6,658,926	+				+0.6
6,658,926	+				-0.7
6,658,926	+				-0.4
6,658,926	+				+1.5
6,658,926	+				+1.5
6,658,926	+				-0.1
6,658,926	+				-0.1
6,658,927	-				+1.5
6,658,927	-				-0.5
6,658,927	-				-1.7
6,659,050	+		Pf6N2E2_5842	0.23	-0.2
6,659,113	+		Pf6N2E2_5842	0.49	-1.8
6,659,113	+		Pf6N2E2_5842	0.49	-0.2
6,659,114	-		Pf6N2E2_5842	0.49	+0.5
6,659,114	-		Pf6N2E2_5842	0.49	-0.3
6,659,114	-		Pf6N2E2_5842	0.49	-2.0
6,659,114	-		Pf6N2E2_5842	0.49	-0.2
6,659,114	-		Pf6N2E2_5842	0.49	-0.8
6,659,342	+				-0.8
6,659,342	+				+0.6
6,659,342	+				-0.8
6,659,342	+				+1.5
6,659,343	-				+1.5
6,659,343	-				+0.1
6,659,343	-				+1.5
6,659,343	-				+1.5
6,659,343	-				-0.1
6,659,343	-				+1.5
6,659,343	-				+0.6
6,659,353	+				+0.4
6,659,353	+				-0.4
6,659,459	+				-1.3
6,659,459	+				-1.8
6,659,462	+				+3.1
6,659,462	+				+1.5
6,659,462	+				-0.1
6,659,463	-				-0.1
6,659,463	-				+1.5
6,659,465	+				-3.0
6,659,465	+				-0.8
6,659,465	+				+0.5
6,659,466	-				-0.1
6,659,599	-				+0.1
6,659,640	+		Pf6N2E2_5843	0.37	-0.1
6,659,640	+		Pf6N2E2_5843	0.37	+1.5
6,659,641	-		Pf6N2E2_5843	0.37	-1.4
6,659,709	-				+0.2
6,659,711	+				-0.1
6,659,711	+				-0.5
6,659,711	+				+1.0
6,659,712	-				+1.5
6,659,753	-				-0.6
6,659,753	-				+0.5
6,659,927	+		Pf6N2E2_5844	0.22	+0.5
6,660,019	-		Pf6N2E2_5844	0.32	+0.3
6,660,019	-		Pf6N2E2_5844	0.32	+0.6
6,660,170	-		Pf6N2E2_5844	0.48	+0.0
6,660,294	+		Pf6N2E2_5844	0.62	+0.3
6,660,295	-		Pf6N2E2_5844	0.62	+0.2
6,660,295	-		Pf6N2E2_5844	0.62	+0.6
6,660,295	-		Pf6N2E2_5844	0.62	-1.8
6,660,405	+		Pf6N2E2_5844	0.74	+0.9
6,660,405	+		Pf6N2E2_5844	0.74	+0.0
6,660,405	+		Pf6N2E2_5844	0.74	+0.9
6,660,405	+		Pf6N2E2_5844	0.74	+0.2
6,660,642	+				-0.0
6,660,642	+				-2.3
6,660,709	+				-0.3
6,660,709	+				+0.8
6,660,709	+				-0.8
6,660,709	+				+2.0
6,660,709	+				-1.1
6,660,709	+				-0.3
6,660,709	+				-0.2
6,660,709	+				-0.6
6,660,710	-				+0.4