Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3914

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
4,548,554	+		Pf6N2E2_3913	0.23	-0.8
4,548,554	+		Pf6N2E2_3913	0.23	+0.0
4,548,554	+		Pf6N2E2_3913	0.23	+1.4
4,548,554	+		Pf6N2E2_3913	0.23	-0.9
4,548,555	-		Pf6N2E2_3913	0.24	-0.5
4,548,555	-		Pf6N2E2_3913	0.24	+0.4
4,548,555	-		Pf6N2E2_3913	0.24	+0.8
4,548,648	+		Pf6N2E2_3913	0.32	+0.7
4,548,648	+		Pf6N2E2_3913	0.32	-0.1
4,548,649	-		Pf6N2E2_3913	0.33	-1.0
4,548,649	-		Pf6N2E2_3913	0.33	-1.2
4,548,649	-		Pf6N2E2_3913	0.33	-0.4
4,548,649	-		Pf6N2E2_3913	0.33	-0.8
4,548,649	-		Pf6N2E2_3913	0.33	-1.0
4,548,649	-		Pf6N2E2_3913	0.33	-0.5
4,548,683	-		Pf6N2E2_3913	0.36	-0.6
4,548,759	+		Pf6N2E2_3913	0.43	+0.5
4,548,760	-		Pf6N2E2_3913	0.43	-0.8
4,548,855	+		Pf6N2E2_3913	0.52	-1.0
4,548,855	+		Pf6N2E2_3913	0.52	+0.1
4,548,855	+		Pf6N2E2_3913	0.52	+1.4
4,548,855	+		Pf6N2E2_3913	0.52	-2.1
4,548,855	+		Pf6N2E2_3913	0.52	-0.2
4,548,855	+		Pf6N2E2_3913	0.52	+0.7
4,548,855	+		Pf6N2E2_3913	0.52	+0.2
4,548,855	+		Pf6N2E2_3913	0.52	-0.6
4,548,856	-		Pf6N2E2_3913	0.53	-0.1
4,548,856	-		Pf6N2E2_3913	0.53	-0.4
4,548,856	-		Pf6N2E2_3913	0.53	-0.8
4,548,856	-		Pf6N2E2_3913	0.53	+0.6
4,548,856	-		Pf6N2E2_3913	0.53	-0.1
4,548,876	-		Pf6N2E2_3913	0.54	+0.4
4,548,939	+		Pf6N2E2_3913	0.61	-1.1
4,548,940	-		Pf6N2E2_3913	0.61	-1.0
4,549,002	+		Pf6N2E2_3913	0.67	+0.4
4,549,003	-		Pf6N2E2_3913	0.67	+1.4
4,549,140	+		Pf6N2E2_3913	0.80	-0.3
4,549,152	+		Pf6N2E2_3913	0.81	+0.4
4,549,152	+		Pf6N2E2_3913	0.81	-0.2
4,549,152	+		Pf6N2E2_3913	0.81	-0.0
4,549,152	+		Pf6N2E2_3913	0.81	-0.1
4,549,153	-		Pf6N2E2_3913	0.81	-0.6
4,549,153	-		Pf6N2E2_3913	0.81	-0.2
4,549,153	-		Pf6N2E2_3913	0.81	+0.1
4,549,153	-		Pf6N2E2_3913	0.81	+0.2
4,549,341	+				-0.3
4,549,341	+				-0.1
4,549,341	+				-0.7
4,549,341	+				-0.3
4,549,342	-				+0.8
4,549,342	-				+1.4
4,549,342	-				+0.0
4,549,388	-				+0.4
4,549,462	+		Pf6N2E2_3914	0.11	-1.6
4,549,462	+		Pf6N2E2_3914	0.11	-1.2
4,549,462	+		Pf6N2E2_3914	0.11	-1.2
4,549,463	-		Pf6N2E2_3914	0.11	+0.2
4,549,463	-		Pf6N2E2_3914	0.11	+0.1
4,549,463	-		Pf6N2E2_3914	0.11	+0.6
4,549,463	-		Pf6N2E2_3914	0.11	+1.1
4,549,464	+		Pf6N2E2_3914	0.11	-0.7
4,549,596	+		Pf6N2E2_3914	0.38	+1.4
4,549,597	-		Pf6N2E2_3914	0.38	-0.1
4,549,597	-		Pf6N2E2_3914	0.38	-1.2
4,549,672	-		Pf6N2E2_3914	0.53	-0.7
4,549,672	-		Pf6N2E2_3914	0.53	-1.8
4,549,720	+		Pf6N2E2_3914	0.62	+0.4
4,549,720	+		Pf6N2E2_3914	0.62	+1.4
4,549,721	-		Pf6N2E2_3914	0.63	-1.5
4,549,721	-		Pf6N2E2_3914	0.63	+2.2
4,549,721	-		Pf6N2E2_3914	0.63	-0.9
4,549,745	+		Pf6N2E2_3914	0.67	-0.4
4,549,746	-		Pf6N2E2_3914	0.68	-0.4
4,549,746	-		Pf6N2E2_3914	0.68	-0.3
4,549,859	+				-1.6
4,549,859	+				+1.4
4,549,927	+				-0.1
4,549,927	+				+0.4
4,549,927	+				-0.2
4,549,927	+				+0.5
4,549,927	+				-0.6
4,549,927	+				+1.4
4,549,927	+				+0.0
4,549,927	+				-0.9
4,549,928	-				+0.0
4,549,928	-				-0.6
4,549,928	-				-0.1
4,549,928	-				-0.2
4,549,928	-				+0.4
4,549,928	-				-0.9
4,549,933	-				-0.6
4,549,933	-				-0.1
4,549,933	-				+0.7
4,550,006	+				-0.2
4,550,007	-				+0.5
4,550,007	-				-0.1
4,550,007	-				+1.0
4,550,007	-				+0.7
4,550,007	-				+0.4
4,550,007	-				+0.4
4,550,007	-				-0.4
4,550,007	-				+1.4
4,550,098	-				-0.1
4,550,124	-				+0.8
4,550,124	-				+0.3
4,550,145	+				+1.1
4,550,146	-				-0.8
4,550,146	-				-0.0
4,550,146	-				-0.3
4,550,155	-				-1.1
4,550,170	+				-0.2
4,550,171	-				+1.1
4,550,173	+				+1.6
4,550,173	+				+0.8
4,550,173	+				-0.2
4,550,174	-				-0.2
4,550,174	-				+0.6
4,550,174	-				-0.4
4,550,174	-				+1.4
4,550,428	+		Pf6N2E2_3915	0.24	+1.4
4,550,469	+		Pf6N2E2_3915	0.29	-0.7
4,550,510	-		Pf6N2E2_3915	0.33	-0.2
4,550,536	+		Pf6N2E2_3915	0.36	+0.4
4,550,536	+		Pf6N2E2_3915	0.36	-0.4
4,550,536	+		Pf6N2E2_3915	0.36	-0.2
4,550,536	+		Pf6N2E2_3915	0.36	+0.5
4,550,536	+		Pf6N2E2_3915	0.36	-0.1
4,550,537	-		Pf6N2E2_3915	0.36	+0.2
4,550,537	-		Pf6N2E2_3915	0.36	-0.2
4,550,537	-		Pf6N2E2_3915	0.36	+0.4
4,550,537	-		Pf6N2E2_3915	0.36	-0.2
4,550,537	-		Pf6N2E2_3915	0.36	+0.7
4,550,537	-		Pf6N2E2_3915	0.36	+0.7
4,550,587	+		Pf6N2E2_3915	0.42	+0.1
4,550,672	+		Pf6N2E2_3915	0.51	-0.6
4,550,748	+		Pf6N2E2_3915	0.60	+0.4
4,550,748	+		Pf6N2E2_3915	0.60	+0.5
4,550,748	+		Pf6N2E2_3915	0.60	+1.4
4,550,748	+		Pf6N2E2_3915	0.60	-0.7
4,550,748	+		Pf6N2E2_3915	0.60	+0.2
4,550,749	-		Pf6N2E2_3915	0.60	-0.7
4,550,749	-		Pf6N2E2_3915	0.60	-0.2
4,550,749	-		Pf6N2E2_3915	0.60	+0.7
4,550,749	-		Pf6N2E2_3915	0.60	-0.4
4,550,749	-		Pf6N2E2_3915	0.60	+2.4
4,550,749	-		Pf6N2E2_3915	0.60	+0.1
4,550,798	-		Pf6N2E2_3915	0.66	-1.0