Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3626

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
4,220,764	+		Pf6N2E2_3625	0.16	-0.2
4,220,764	+		Pf6N2E2_3625	0.16	-0.5
4,220,765	-		Pf6N2E2_3625	0.16	+0.0
4,220,765	-		Pf6N2E2_3625	0.16	+0.8
4,220,765	-		Pf6N2E2_3625	0.16	+1.1
4,220,937	+		Pf6N2E2_3625	0.37	-0.1
4,221,025	+		Pf6N2E2_3625	0.47	+0.2
4,221,025	+		Pf6N2E2_3625	0.47	+0.2
4,221,026	-		Pf6N2E2_3625	0.47	+0.5
4,221,026	-		Pf6N2E2_3625	0.47	+0.6
4,221,026	-		Pf6N2E2_3625	0.47	+0.5
4,221,095	-		Pf6N2E2_3625	0.55	+0.2
4,221,095	-		Pf6N2E2_3625	0.55	+0.6
4,221,142	+		Pf6N2E2_3625	0.61	+0.6
4,221,232	+		Pf6N2E2_3625	0.71	+0.2
4,221,232	+		Pf6N2E2_3625	0.71	+0.8
4,221,233	-		Pf6N2E2_3625	0.71	+0.9
4,221,233	-		Pf6N2E2_3625	0.71	-0.0
4,221,233	-		Pf6N2E2_3625	0.71	+0.6
4,221,233	-		Pf6N2E2_3625	0.71	+0.6
4,221,233	-		Pf6N2E2_3625	0.71	+0.8
4,221,257	-		Pf6N2E2_3625	0.74	+0.9
4,221,257	-		Pf6N2E2_3625	0.74	+0.5
4,221,257	-		Pf6N2E2_3625	0.74	+0.9
4,221,257	-		Pf6N2E2_3625	0.74	+0.8
4,221,257	-		Pf6N2E2_3625	0.74	-0.2
4,221,257	-		Pf6N2E2_3625	0.74	+0.7
4,221,269	+		Pf6N2E2_3625	0.76	-0.4
4,221,320	+		Pf6N2E2_3625	0.82	+0.7
4,221,320	+		Pf6N2E2_3625	0.82	-0.2
4,221,320	+		Pf6N2E2_3625	0.82	+1.7
4,221,320	+		Pf6N2E2_3625	0.82	+0.1
4,221,320	+		Pf6N2E2_3625	0.82	+0.5
4,221,321	-		Pf6N2E2_3625	0.82	+0.7
4,221,321	-		Pf6N2E2_3625	0.82	+1.1
4,221,321	-		Pf6N2E2_3625	0.82	+0.0
4,221,321	-		Pf6N2E2_3625	0.82	+0.3
4,221,321	-		Pf6N2E2_3625	0.82	+0.6
4,221,321	-		Pf6N2E2_3625	0.82	+1.0
4,221,321	-		Pf6N2E2_3625	0.82	+0.1
4,221,321	-		Pf6N2E2_3625	0.82	+1.8
4,221,322	+		Pf6N2E2_3625	0.82	+0.3
4,221,322	+		Pf6N2E2_3625	0.82	+0.2
4,221,322	+		Pf6N2E2_3625	0.82	+0.6
4,221,322	+		Pf6N2E2_3625	0.82	+3.0
4,221,323	-		Pf6N2E2_3625	0.82	+1.7
4,221,323	-		Pf6N2E2_3625	0.82	+1.4
4,221,323	-		Pf6N2E2_3625	0.82	-0.2
4,221,435	+				+0.7
4,221,436	-				+1.1
4,221,436	-				-0.9
4,221,464	+				+2.1
4,221,476	+				+1.0
4,221,476	+				+0.9
4,221,477	-				+0.3
4,221,477	-				-0.3
4,221,477	-				+0.8
4,221,481	-				+1.4
4,221,481	-				+0.3
4,221,487	+				+0.7
4,221,487	+				+0.4
4,221,488	-				+0.2
4,221,491	+				+1.2
4,221,491	+				+0.4
4,221,492	-				-0.7
4,221,492	-				-1.8
4,221,492	-				-1.7
4,221,492	-				+0.1
4,221,492	-				-0.4
4,221,492	-				-1.1
4,221,495	+				-0.5
4,221,495	+				+0.4
4,221,496	-				-0.3
4,221,496	-				-1.5
4,221,514	+				+0.6
4,221,514	+				+1.0
4,221,542	+				+0.2
4,221,542	+				+2.0
4,221,542	+				-0.2
4,221,542	+				+0.2
4,221,543	-				+0.1
4,221,543	-				-0.2
4,221,543	-				-0.5
4,221,543	-				-0.2
4,221,543	-				-1.2
4,221,543	-				+0.8
4,221,543	-				-0.8
4,221,543	-				+0.6
4,221,547	-				+0.5
4,221,568	+				+0.3
4,221,568	+				-0.2
4,221,568	+				+0.9
4,221,569	-				-0.4
4,221,569	-				-1.6
4,221,570	+				-0.3
4,221,570	+				+0.3
4,221,570	+				-0.0
4,221,571	-				-1.0
4,221,571	-				-0.0
4,221,571	-				-0.6
4,221,613	+				+0.6
4,221,613	+				-0.2
4,221,614	-				+0.4
4,221,614	-				-0.4
4,221,614	-				-0.4
4,221,786	+				+0.5
4,221,786	+				-2.1
4,221,787	-				-1.3
4,221,787	-				-0.2
4,221,854	+		Pf6N2E2_3626	0.14	+1.0
4,221,854	+		Pf6N2E2_3626	0.14	+0.9
4,221,854	+		Pf6N2E2_3626	0.14	-0.2
4,221,854	+		Pf6N2E2_3626	0.14	+1.6
4,221,855	-		Pf6N2E2_3626	0.14	-0.6
4,221,855	-		Pf6N2E2_3626	0.14	-0.1
4,221,855	-		Pf6N2E2_3626	0.14	+0.4
4,221,855	-		Pf6N2E2_3626	0.14	-0.2
4,221,855	-		Pf6N2E2_3626	0.14	-0.6
4,222,191	+		Pf6N2E2_3626	0.36	-0.3
4,222,191	+		Pf6N2E2_3626	0.36	+1.4
4,222,192	-		Pf6N2E2_3626	0.36	-0.3
4,222,192	-		Pf6N2E2_3626	0.36	+1.2
4,222,493	+		Pf6N2E2_3626	0.55	-0.2
4,222,493	+		Pf6N2E2_3626	0.55	+0.1
4,222,493	+		Pf6N2E2_3626	0.55	+1.4
4,222,493	+		Pf6N2E2_3626	0.55	+1.4
4,222,494	-		Pf6N2E2_3626	0.55	-1.0
4,222,509	-		Pf6N2E2_3626	0.56	-1.6
4,222,509	-		Pf6N2E2_3626	0.56	+1.1
4,222,845	+		Pf6N2E2_3626	0.78	+1.3
4,222,845	+		Pf6N2E2_3626	0.78	+1.0
4,222,845	+		Pf6N2E2_3626	0.78	+1.2
4,222,891	+		Pf6N2E2_3626	0.81	+0.6
4,222,892	-		Pf6N2E2_3626	0.81	-0.9
4,222,892	-		Pf6N2E2_3626	0.81	+0.1
4,222,892	-		Pf6N2E2_3626	0.81	-0.2
4,222,911	+		Pf6N2E2_3626	0.82	-0.2
4,222,911	+		Pf6N2E2_3626	0.82	-0.4
4,222,912	-		Pf6N2E2_3626	0.82	-0.6
4,222,912	-		Pf6N2E2_3626	0.82	+0.9
4,222,912	-		Pf6N2E2_3626	0.82	-0.3
4,222,912	-		Pf6N2E2_3626	0.82	+0.4
4,223,112	+				+0.2
4,223,112	+				-0.0
4,223,112	+				-0.1
4,223,112	+				+1.2
4,223,112	+				-1.6
4,223,112	+				+0.2
4,223,112	+				+2.4
4,223,113	-				-0.1
4,223,113	-				-0.2
4,223,113	-				-0.1
4,223,113	-				+0.4
4,223,113	-				-1.2
4,223,158	+				-0.7
4,223,158	+				+0.1
4,223,158	+				+0.3
4,223,158	+				-0.2
4,223,159	-				-0.4
4,223,159	-				-0.2
4,223,159	-				-0.0
4,223,159	-				+1.2
4,223,164	+				+1.6
4,223,189	+				-0.9
4,223,189	+				-0.6
4,223,190	-				-0.2
4,223,190	-				+0.1
4,223,474	+		Pf6N2E2_3627	0.31	+1.1
4,223,474	+		Pf6N2E2_3627	0.31	-1.4
4,223,474	+		Pf6N2E2_3627	0.31	-0.1
4,223,474	+		Pf6N2E2_3627	0.31	-0.6
4,223,474	+		Pf6N2E2_3627	0.31	+0.2
4,223,478	+		Pf6N2E2_3627	0.31	+0.0
4,223,478	+		Pf6N2E2_3627	0.31	-0.5
4,223,483	+		Pf6N2E2_3627	0.32	+1.4
4,223,483	+		Pf6N2E2_3627	0.32	-0.6
4,223,552	+		Pf6N2E2_3627	0.40	+0.0
4,223,552	+		Pf6N2E2_3627	0.40	-1.7
4,223,552	+		Pf6N2E2_3627	0.40	+1.4
4,223,552	+		Pf6N2E2_3627	0.40	-1.3
4,223,552	+		Pf6N2E2_3627	0.40	+1.2
4,223,552	+		Pf6N2E2_3627	0.40	-0.3
4,223,552	+		Pf6N2E2_3627	0.40	-1.4
4,223,552	+		Pf6N2E2_3627	0.40	+0.0
4,223,552	+		Pf6N2E2_3627	0.40	+0.4
4,223,552	+		Pf6N2E2_3627	0.40	-0.6
4,223,552	+		Pf6N2E2_3627	0.40	+0.1
4,223,552	+		Pf6N2E2_3627	0.40	+1.0
4,223,552	+		Pf6N2E2_3627	0.40	-1.0
4,223,681	+		Pf6N2E2_3627	0.56	-0.5
4,223,744	+		Pf6N2E2_3627	0.64	-1.7
4,223,744	+		Pf6N2E2_3627	0.64	-0.7
4,223,744	+		Pf6N2E2_3627	0.64	+0.4
4,223,942	+		Pf6N2E2_3627	0.88	-0.1
4,223,942	+		Pf6N2E2_3627	0.88	-1.5
4,223,942	+		Pf6N2E2_3627	0.88	+0.4
4,224,048	+				+1.4
4,224,048	+				-0.7
4,224,048	+				-1.5