Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1242

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
1,455,825	+		Pf6N2E2_1241	0.81	-0.5
1,455,825	+		Pf6N2E2_1241	0.81	-0.6
1,455,825	+		Pf6N2E2_1241	0.81	-0.6
1,455,825	+		Pf6N2E2_1241	0.81	+0.4
1,455,825	+		Pf6N2E2_1241	0.81	+0.4
1,455,825	+		Pf6N2E2_1241	0.81	+1.6
1,455,825	+		Pf6N2E2_1241	0.81	+2.6
1,455,825	+		Pf6N2E2_1241	0.81	+1.0
1,455,825	+		Pf6N2E2_1241	0.81	-0.6
1,455,825	+		Pf6N2E2_1241	0.81	-0.7
1,455,825	+		Pf6N2E2_1241	0.81	-0.3
1,455,825	+		Pf6N2E2_1241	0.81	-0.4
1,455,825	+		Pf6N2E2_1241	0.81	-0.2
1,455,825	+		Pf6N2E2_1241	0.81	-0.9
1,455,825	+		Pf6N2E2_1241	0.81	-1.0
1,455,825	+		Pf6N2E2_1241	0.81	-1.8
1,455,826	-		Pf6N2E2_1241	0.81	+0.9
1,455,826	-		Pf6N2E2_1241	0.81	+0.6
1,455,826	-		Pf6N2E2_1241	0.81	+1.6
1,455,826	-		Pf6N2E2_1241	0.81	+0.9
1,455,826	-		Pf6N2E2_1241	0.81	-0.2
1,455,826	-		Pf6N2E2_1241	0.81	-1.1
1,455,826	-		Pf6N2E2_1241	0.81	-0.0
1,455,941	+		Pf6N2E2_1241	0.88	+0.1
1,455,941	+		Pf6N2E2_1241	0.88	+0.4
1,455,941	+		Pf6N2E2_1241	0.88	+0.4
1,455,941	+		Pf6N2E2_1241	0.88	+0.6
1,455,942	-		Pf6N2E2_1241	0.88	-0.4
1,455,942	-		Pf6N2E2_1241	0.88	+0.1
1,456,090	+				-0.4
1,456,090	+				-0.3
1,456,090	+				-1.6
1,456,091	-				+1.1
1,456,091	-				+0.3
1,456,091	-				+0.9
1,456,277	-				-0.4
1,456,277	-				-0.1
1,456,300	+				-0.6
1,456,300	+				-0.6
1,456,313	+				-1.2
1,456,447	+				+0.6
1,456,497	+				+1.5
1,456,498	-				-1.1
1,456,498	-				-0.9
1,456,544	+				-0.2
1,456,545	-				+0.1
1,456,545	-				-0.2
1,456,545	-				-0.9
1,456,545	-				-0.2
1,456,545	-				-0.2
1,456,545	-				+3.2
1,456,722	+		Pf6N2E2_1242	0.12	-1.6
1,456,723	-		Pf6N2E2_1242	0.12	+1.2
1,456,723	-		Pf6N2E2_1242	0.12	-1.6
1,456,723	-		Pf6N2E2_1242	0.12	-1.8
1,456,723	-		Pf6N2E2_1242	0.12	-0.8
1,456,785	+		Pf6N2E2_1242	0.18	-1.4
1,456,785	+		Pf6N2E2_1242	0.18	+1.6
1,456,785	+		Pf6N2E2_1242	0.18	-1.2
1,456,810	-		Pf6N2E2_1242	0.21	-0.7
1,456,967	-		Pf6N2E2_1242	0.37	+0.6
1,457,227	+		Pf6N2E2_1242	0.64	+1.0
1,457,227	+		Pf6N2E2_1242	0.64	-1.1
1,457,227	+		Pf6N2E2_1242	0.64	-0.4
1,457,228	-		Pf6N2E2_1242	0.64	-0.1
1,457,555	+				-0.4
1,457,555	+				+0.4
1,457,628	-				-1.2
1,457,657	+				+0.6
1,457,657	+				-0.6
1,457,657	+				+1.5
1,457,703	+				-0.4
1,457,715	+				+1.1
1,457,715	+				+1.2
1,457,721	+				+1.1
1,457,721	+				-0.0
1,457,722	-				-0.6
1,457,722	-				+0.9
1,457,722	-				+1.6
1,457,722	-				-0.7
1,457,725	+				-1.5
1,457,725	+				-0.8
1,457,725	+				-0.0
1,457,726	-				-0.8
1,457,755	+				+0.7
1,457,755	+				-0.7
1,457,756	-				-0.7
1,457,756	-				+1.6
1,457,756	-				+0.6
1,457,756	-				+2.4
1,457,767	+		Pf6N2E2_1243	0.12	+1.6
1,457,767	+		Pf6N2E2_1243	0.12	+1.6
1,457,767	+		Pf6N2E2_1243	0.12	+1.6
1,457,767	+		Pf6N2E2_1243	0.12	+0.6
1,457,767	+		Pf6N2E2_1243	0.12	+0.6
1,457,767	+		Pf6N2E2_1243	0.12	-0.1
1,457,768	-		Pf6N2E2_1243	0.12	+0.8
1,457,799	+		Pf6N2E2_1243	0.24	-1.2
1,457,799	+		Pf6N2E2_1243	0.24	+0.1
1,457,820	+		Pf6N2E2_1243	0.33	+0.2
1,457,820	+		Pf6N2E2_1243	0.33	+0.3
1,457,821	-		Pf6N2E2_1243	0.33	-0.1
1,457,821	-		Pf6N2E2_1243	0.33	+0.2
1,457,926	+		Pf6N2E2_1243	0.74	+0.4
1,457,926	+		Pf6N2E2_1243	0.74	-1.3
1,457,932	-		Pf6N2E2_1243	0.76	+0.6
1,457,934	+		Pf6N2E2_1243	0.77	-0.1
1,458,069	+				-0.1
1,458,329	-		Pf6N2E2_1244	0.80	+0.6
1,458,409	-				+0.8
1,458,460	+				+0.6
1,458,515	+				+1.6