Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28860

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,418,773	-				-1.6
6,418,773	-				-2.2
6,418,776	-				+1.2
6,418,776	-				-0.6
6,418,776	-				-0.5
6,418,828	+				-0.7
6,418,868	+				-0.6
6,418,868	+				+1.7
6,418,868	+				+3.1
6,418,868	+				+0.9
6,418,868	+				-1.7
6,418,868	+				-1.4
6,418,868	+				-0.2
6,418,868	+				+1.1
6,418,868	+				+1.1
6,418,868	+				+0.9
6,418,868	+				+2.0
6,418,868	+				+2.8
6,418,868	+				+2.5
6,418,868	+				+1.5
6,418,868	+				+2.9
6,418,868	+				-0.6
6,418,868	+				-0.6
6,418,868	+				+0.6
6,418,868	+				+1.2
6,418,869	-				-0.5
6,418,869	-				-0.5
6,418,869	-				+0.3
6,418,869	-				-0.3
6,418,869	-				+0.8
6,418,869	-				-1.7
6,418,869	-				+0.9
6,418,869	-				+3.4
6,418,869	-				-1.7
6,418,869	-				-0.9
6,418,869	-				-1.2
6,418,869	-				-1.5
6,418,869	-				-0.4
6,418,869	-				-3.3
6,418,869	-				-2.3
6,418,869	-				-1.4
6,418,869	-				+0.9
6,418,869	-				+0.9
6,418,869	-				+0.3
6,418,869	-				+0.1
6,418,869	-				+1.1
6,418,869	-				+0.2
6,418,869	-				-1.1
6,418,869	-				-0.1
6,418,869	-				-0.3
6,418,869	-				-0.6
6,418,869	-				-0.4
6,418,869	-				-1.2
6,418,869	-				+0.9
6,418,869	-				+2.4
6,418,869	-				-0.9
6,418,869	-				+2.4
6,418,869	-				-1.6
6,418,869	-				-0.4
6,418,869	-				-2.9
6,418,869	-				-0.5
6,418,872	+				-0.3
6,418,872	+				-0.5
6,418,872	+				+0.7
6,418,872	+				-2.2
6,418,872	+				-2.0
6,418,872	+				-2.6
6,418,872	+				+1.0
6,418,872	+				+1.2
6,418,872	+				-1.3
6,418,873	-				+0.7
6,418,873	-				-2.4
6,418,873	-				+1.5
6,418,873	-				-2.5
6,418,873	-				-1.1
6,418,873	-				+0.4
6,418,873	-				-0.6
6,418,873	-				+2.5
6,418,873	-				-1.7
6,418,873	-				+1.0
6,418,873	-				-1.6
6,418,873	-				-0.1
6,418,873	-				-1.0
6,418,873	-				+1.3
6,418,873	-				-0.1
6,418,873	-				+0.3
6,418,873	-				+2.4
6,418,878	+				+2.5
6,418,878	+				-1.1
6,418,879	-				+2.3
6,418,890	-				+2.1
6,418,894	+				+1.5
6,418,894	+				+0.8
6,418,894	+				+1.3
6,418,894	+				-0.1
6,418,895	-				-0.0
6,418,895	-				+3.7
6,418,912	+				-2.8
6,418,912	+				-1.2
6,418,912	+				+3.1
6,418,912	+				-3.4
6,418,912	+				-0.3
6,418,912	+				+0.8
6,418,913	-				-1.9
6,418,913	-				-1.3
6,418,913	-				-0.5
6,418,913	-				+0.9
6,418,935	+				-3.4
6,418,935	+				-0.9
6,418,935	+				+1.2
6,418,935	+				-0.5
6,418,936	-				-0.4
6,418,936	-				-0.4
6,418,936	-				+1.5
6,418,936	-				-0.3
6,418,936	-				-0.1
6,418,946	+				-0.9
6,418,946	+				+1.4
6,418,946	+				-0.9
6,418,946	+				-0.3
6,418,946	+				+0.2
6,418,946	+				+0.4
6,418,946	+				-0.6
6,418,946	+				+0.1
6,418,946	+				-0.3
6,418,946	+				+1.2
6,418,947	-				+0.8
6,418,947	-				-1.2
6,418,947	-				-0.3
6,418,947	-				+0.3
6,418,947	-				-0.9
6,418,973	-				+0.5
6,418,973	-				-0.5
6,418,973	-				-2.5
6,419,047	+		PFLU_RS28860	0.13	-0.2
6,419,047	+		PFLU_RS28860	0.13	+0.5
6,419,047	+		PFLU_RS28860	0.13	+1.5
6,419,047	+		PFLU_RS28860	0.13	+2.5
6,419,047	+		PFLU_RS28860	0.13	-1.9
6,419,048	-		PFLU_RS28860	0.13	+0.9
6,419,070	+		PFLU_RS28860	0.15	-1.3
6,419,071	-		PFLU_RS28860	0.15	+0.2
6,419,170	+		PFLU_RS28860	0.24	-0.1
6,419,683	-		PFLU_RS28860	0.69	+0.1
6,419,736	+		PFLU_RS28860	0.73	-0.6
6,419,736	+		PFLU_RS28860	0.73	-0.3
6,419,797	+		PFLU_RS28860	0.79	-0.5
6,419,797	+		PFLU_RS28860	0.79	-0.5
6,419,797	+		PFLU_RS28860	0.79	-0.4
6,419,797	+		PFLU_RS28860	0.79	-2.6
6,419,798	-		PFLU_RS28860	0.79	-0.4
6,419,798	-		PFLU_RS28860	0.79	-0.2
6,419,798	-		PFLU_RS28860	0.79	-0.5
6,419,798	-		PFLU_RS28860	0.79	-2.8
6,419,798	-		PFLU_RS28860	0.79	-0.6
6,419,814	-		PFLU_RS28860	0.80	-0.3
6,420,075	+				-1.0
6,420,075	+				-0.1
6,420,075	+				-0.2
6,420,075	+				-1.6
6,420,075	+				-0.3
6,420,075	+				+0.5
6,420,075	+				+1.5
6,420,075	+				+1.1
6,420,075	+				+0.8
6,420,076	-				+0.9
6,420,076	-				-1.3
6,420,076	-				-1.4
6,420,076	-				+0.8
6,420,076	-				-1.6
6,420,077	+				-1.2
6,420,077	+				-0.3
6,420,077	+				+1.6
6,420,077	+				-1.9
6,420,077	+				+1.5
6,420,077	+				-2.5
6,420,077	+				+0.1
6,420,077	+				-1.6
6,420,077	+				-0.8
6,420,077	+				+1.1
6,420,077	+				-0.9
6,420,077	+				-0.6
6,420,077	+				-2.7
6,420,077	+				-0.1
6,420,077	+				-2.2
6,420,077	+				+1.1
6,420,077	+				-0.5
6,420,077	+				-0.5
6,420,077	+				+1.6
6,420,077	+				-0.8
6,420,078	-				+0.7
6,420,078	-				+0.6
6,420,078	-				-2.3
6,420,078	-				+1.8
6,420,078	-				-1.1
6,420,078	-				-1.8
6,420,078	-				+1.0
6,420,078	-				-1.2
6,420,078	-				+0.6
6,420,078	-				-1.4
6,420,078	-				-1.0
6,420,078	-				+1.6
6,420,078	-				-0.8
6,420,078	-				+0.2
6,420,099	+				+0.4
6,420,099	+				+0.7
6,420,100	-				+0.2
6,420,100	-				-0.8
6,420,100	-				-1.7
6,420,100	-				-2.3
6,420,100	-				-1.4
6,420,100	-				-3.2
6,420,134	+				-0.5
6,420,134	+				-1.5
6,420,134	+				+1.6
6,420,134	+				-0.2
6,420,134	+				+4.1
6,420,135	-				+1.1
6,420,135	-				+2.3
6,420,135	-				-1.8
6,420,135	-				+1.4
6,420,135	-				+1.9
6,420,135	-				+1.7
6,420,255	+				-2.3
6,420,255	+				+1.8
6,420,255	+				-0.6
6,420,255	+				-2.8
6,420,256	-				-1.0
6,420,256	-				-0.5
6,420,323	+				+0.4
6,420,323	+				+0.1
6,420,323	+				-1.1
6,420,323	+				-1.5
6,420,324	-				+1.5
6,420,324	-				+0.2
6,420,324	-				+3.2
6,420,324	-				+0.9
6,420,324	-				-0.6
6,420,448	+		PFLU_RS28865	0.18	-0.1
6,420,448	+		PFLU_RS28865	0.18	-1.2
6,420,448	+		PFLU_RS28865	0.18	+1.8
6,420,448	+		PFLU_RS28865	0.18	+1.0
6,420,449	-		PFLU_RS28865	0.18	+1.0
6,420,455	+		PFLU_RS28865	0.19	-0.8
6,420,455	+		PFLU_RS28865	0.19	-2.0
6,420,455	+		PFLU_RS28865	0.19	-0.6
6,420,455	+		PFLU_RS28865	0.19	-1.5
6,420,456	-		PFLU_RS28865	0.19	+1.4
6,420,456	-		PFLU_RS28865	0.19	+2.1
6,420,456	-		PFLU_RS28865	0.19	+0.2
6,420,456	-		PFLU_RS28865	0.19	-2.1
6,420,456	-		PFLU_RS28865	0.19	-0.6
6,420,456	-		PFLU_RS28865	0.19	+0.2
6,420,456	-		PFLU_RS28865	0.19	+1.4
6,420,809	+		PFLU_RS28865	0.45	-2.0
6,420,809	+		PFLU_RS28865	0.45	+0.6
6,420,810	-		PFLU_RS28865	0.45	-0.1
6,420,810	-		PFLU_RS28865	0.45	+1.5
6,420,824	+		PFLU_RS28865	0.46	+4.8
6,420,824	+		PFLU_RS28865	0.46	+0.9
6,420,824	+		PFLU_RS28865	0.46	-2.1
6,420,824	+		PFLU_RS28865	0.46	-1.0
6,420,824	+		PFLU_RS28865	0.46	-0.1
6,420,824	+		PFLU_RS28865	0.46	-1.1
6,420,824	+		PFLU_RS28865	0.46	-0.3
6,420,825	-		PFLU_RS28865	0.46	+2.0
6,420,825	-		PFLU_RS28865	0.46	-2.2
6,420,825	-		PFLU_RS28865	0.46	+0.1
6,420,825	-		PFLU_RS28865	0.46	+0.7
6,420,825	-		PFLU_RS28865	0.46	-0.8
6,420,825	-		PFLU_RS28865	0.46	-1.2
6,420,825	-		PFLU_RS28865	0.46	+0.3
6,420,935	+		PFLU_RS28865	0.54	+2.1
6,420,936	-		PFLU_RS28865	0.54	+1.0
6,420,944	-		PFLU_RS28865	0.54	-1.9
6,420,944	-		PFLU_RS28865	0.54	+2.7