Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28010

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,236,700	-		PFLU_RS28005	0.41	+2.2
6,236,918	+		PFLU_RS28005	0.58	-0.8
6,236,919	-		PFLU_RS28005	0.58	+0.3
6,236,919	-		PFLU_RS28005	0.58	-0.5
6,236,919	-		PFLU_RS28005	0.58	+1.0
6,236,919	-		PFLU_RS28005	0.58	+1.5
6,237,084	-		PFLU_RS28005	0.70	+3.5
6,237,138	+		PFLU_RS28005	0.74	-0.1
6,237,139	-		PFLU_RS28005	0.74	+1.9
6,237,139	-		PFLU_RS28005	0.74	-0.8
6,237,194	+		PFLU_RS28005	0.79	-0.1
6,237,194	+		PFLU_RS28005	0.79	+0.4
6,237,194	+		PFLU_RS28005	0.79	+1.2
6,237,194	+		PFLU_RS28005	0.79	+0.1
6,237,194	+		PFLU_RS28005	0.79	-0.1
6,237,194	+		PFLU_RS28005	0.79	-1.5
6,237,194	+		PFLU_RS28005	0.79	+1.0
6,237,194	+		PFLU_RS28005	0.79	-0.4
6,237,194	+		PFLU_RS28005	0.79	+4.2
6,237,194	+		PFLU_RS28005	0.79	-1.3
6,237,195	-		PFLU_RS28005	0.79	+2.5
6,237,195	-		PFLU_RS28005	0.79	+1.3
6,237,195	-		PFLU_RS28005	0.79	+1.6
6,237,195	-		PFLU_RS28005	0.79	-2.1
6,237,195	-		PFLU_RS28005	0.79	-1.4
6,237,195	-		PFLU_RS28005	0.79	-1.1
6,237,195	-		PFLU_RS28005	0.79	+1.5
6,237,195	-		PFLU_RS28005	0.79	+1.3
6,237,212	+		PFLU_RS28005	0.80	-2.3
6,237,222	-		PFLU_RS28005	0.81	+0.9
6,237,248	-		PFLU_RS28005	0.83	-0.6
6,237,335	+		PFLU_RS28005	0.89	+1.5
6,237,335	+		PFLU_RS28005	0.89	-1.4
6,237,400	+				-0.5
6,237,401	-				+0.4
6,237,404	+				-1.9
6,237,404	+				+2.0
6,237,404	+				+2.6
6,237,404	+				+1.7
6,237,404	+				+2.5
6,237,404	+				-0.7
6,237,405	-				-0.8
6,237,405	-				-0.4
6,237,405	-				+0.9
6,237,405	-				-1.9
6,237,405	-				+0.2
6,237,474	-				-1.1
6,237,535	+				-0.9
6,237,535	+				-1.3
6,237,535	+				+2.1
6,237,535	+				-2.5
6,237,535	+				-0.6
6,237,535	+				-2.6
6,237,535	+				-0.2
6,237,535	+				+0.3
6,237,535	+				+0.7
6,237,535	+				+1.6
6,237,535	+				-1.6
6,237,535	+				-0.3
6,237,535	+				-2.2
6,237,535	+				-0.1
6,237,535	+				+1.9
6,237,535	+				+0.3
6,237,535	+				-0.5
6,237,535	+				+0.7
6,237,535	+				-0.0
6,237,536	-				-0.5
6,237,536	-				-0.3
6,237,536	-				-0.5
6,237,536	-				-0.6
6,237,536	-				-2.2
6,237,536	-				+1.3
6,237,536	-				-2.1
6,237,536	-				+0.3
6,237,536	-				+2.5
6,237,536	-				-0.1
6,237,536	-				+3.1
6,237,536	-				-1.8
6,237,548	+				-1.9
6,237,548	+				-1.2
6,237,548	+				-0.7
6,237,549	-				-0.1
6,237,549	-				-2.2
6,237,622	+				-0.3
6,237,622	+				+0.2
6,237,622	+				-1.5
6,237,622	+				+0.5
6,237,622	+				+0.4
6,237,622	+				-1.1
6,237,623	-				+2.2
6,237,623	-				-1.8
6,237,623	-				-1.8
6,237,623	-				+1.2
6,237,624	+				-1.6
6,237,625	-				+0.2
6,237,625	-				-0.8
6,237,742	+				+1.2
6,237,742	+				+2.1
6,237,742	+				-2.1
6,237,742	+				+0.5
6,237,742	+				-1.3
6,237,742	+				+1.2
6,237,742	+				+0.5
6,237,742	+				-1.6
6,237,742	+				-1.3
6,237,742	+				+0.8
6,237,742	+				+0.1
6,237,742	+				+0.5
6,237,743	-				-0.6
6,237,743	-				-0.8
6,237,743	-				-0.3
6,237,915	+		PFLU_RS28010	0.24	+0.6
6,237,915	+		PFLU_RS28010	0.24	-0.1
6,237,915	+		PFLU_RS28010	0.24	+0.2
6,237,916	-		PFLU_RS28010	0.24	+3.7
6,237,916	-		PFLU_RS28010	0.24	-1.9
6,237,916	-		PFLU_RS28010	0.24	-0.6
6,237,916	-		PFLU_RS28010	0.24	-0.3
6,237,916	-		PFLU_RS28010	0.24	+0.5
6,237,916	-		PFLU_RS28010	0.24	+0.1
6,237,916	-		PFLU_RS28010	0.24	+4.3
6,238,114	+		PFLU_RS28010	0.46	+2.3
6,238,114	+		PFLU_RS28010	0.46	+0.3
6,238,114	+		PFLU_RS28010	0.46	-1.8
6,238,114	+		PFLU_RS28010	0.46	-1.1
6,238,114	+		PFLU_RS28010	0.46	-1.2
6,238,114	+		PFLU_RS28010	0.46	-0.5
6,238,115	-		PFLU_RS28010	0.47	-1.3
6,238,115	-		PFLU_RS28010	0.47	+1.2
6,238,115	-		PFLU_RS28010	0.47	+0.5
6,238,115	-		PFLU_RS28010	0.47	-1.9
6,238,127	+		PFLU_RS28010	0.48	-1.3
6,238,127	+		PFLU_RS28010	0.48	-0.1
6,238,128	-		PFLU_RS28010	0.48	-2.1
6,238,195	+		PFLU_RS28010	0.56	-1.1
6,238,195	+		PFLU_RS28010	0.56	+2.3
6,238,195	+		PFLU_RS28010	0.56	+1.3
6,238,195	+		PFLU_RS28010	0.56	-1.5
6,238,195	+		PFLU_RS28010	0.56	-1.4
6,238,195	+		PFLU_RS28010	0.56	-0.1
6,238,195	+		PFLU_RS28010	0.56	+0.5
6,238,195	+		PFLU_RS28010	0.56	+0.2
6,238,195	+		PFLU_RS28010	0.56	-1.1
6,238,196	-		PFLU_RS28010	0.56	-2.2
6,238,196	-		PFLU_RS28010	0.56	+1.4
6,238,258	+		PFLU_RS28010	0.63	-0.8
6,238,278	+		PFLU_RS28010	0.65	-2.4
6,238,279	-		PFLU_RS28010	0.65	-1.3
6,238,279	-		PFLU_RS28010	0.65	-1.1
6,238,312	+		PFLU_RS28010	0.69	+0.4
6,238,312	+		PFLU_RS28010	0.69	+0.5
6,238,312	+		PFLU_RS28010	0.69	-1.9
6,238,312	+		PFLU_RS28010	0.69	+0.5
6,238,312	+		PFLU_RS28010	0.69	+0.5
6,238,312	+		PFLU_RS28010	0.69	+0.5
6,238,312	+		PFLU_RS28010	0.69	+0.2
6,238,312	+		PFLU_RS28010	0.69	-0.8
6,238,313	-		PFLU_RS28010	0.69	-1.3
6,238,313	-		PFLU_RS28010	0.69	+0.2
6,238,313	-		PFLU_RS28010	0.69	+0.2
6,238,313	-		PFLU_RS28010	0.69	-0.9
6,238,313	-		PFLU_RS28010	0.69	+2.7
6,238,313	-		PFLU_RS28010	0.69	-0.1
6,238,375	+		PFLU_RS28010	0.76	-0.5
6,238,375	+		PFLU_RS28010	0.76	-0.8
6,238,375	+		PFLU_RS28010	0.76	+0.9
6,238,375	+		PFLU_RS28010	0.76	+0.0
6,238,375	+		PFLU_RS28010	0.76	+1.2
6,238,375	+		PFLU_RS28010	0.76	-0.8
6,238,375	+		PFLU_RS28010	0.76	+0.4
6,238,376	-		PFLU_RS28010	0.76	+1.2
6,238,376	-		PFLU_RS28010	0.76	-0.8
6,238,376	-		PFLU_RS28010	0.76	-0.3
6,238,376	-		PFLU_RS28010	0.76	-1.2
6,238,376	-		PFLU_RS28010	0.76	+0.2
6,238,376	-		PFLU_RS28010	0.76	-2.1
6,238,376	-		PFLU_RS28010	0.76	+0.9
6,238,376	-		PFLU_RS28010	0.76	+2.8
6,238,411	+		PFLU_RS28010	0.80	-2.9
6,238,411	+		PFLU_RS28010	0.80	-2.4
6,238,411	+		PFLU_RS28010	0.80	+2.2
6,238,411	+		PFLU_RS28010	0.80	-1.4
6,238,411	+		PFLU_RS28010	0.80	-0.0
6,238,411	+		PFLU_RS28010	0.80	-1.3
6,238,412	-		PFLU_RS28010	0.80	-0.2
6,238,412	-		PFLU_RS28010	0.80	-2.1
6,238,412	-		PFLU_RS28010	0.80	+1.2
6,238,412	-		PFLU_RS28010	0.80	-0.7
6,238,412	-		PFLU_RS28010	0.80	-1.4
6,238,412	-		PFLU_RS28010	0.80	-0.6
6,238,588	+				+0.5
6,238,588	+				-0.9
6,238,602	+				-2.2
6,238,602	+				+1.5
6,238,602	+				-0.5
6,238,602	+				-0.3
6,238,602	+				-0.8
6,238,602	+				-0.6
6,238,602	+				-1.9
6,238,602	+				-2.0
6,238,603	-				+1.7
6,238,603	-				+1.5
6,238,603	-				+2.4
6,238,603	-				+1.7
6,238,603	-				+0.3
6,238,603	-				+1.3
6,238,610	+				+2.6
6,238,610	+				+1.4
6,238,610	+				-0.9
6,238,611	-				+2.3
6,238,798	+		PFLU_RS28015	0.12	-0.8
6,238,798	+		PFLU_RS28015	0.12	-0.5
6,238,798	+		PFLU_RS28015	0.12	+0.5
6,238,798	+		PFLU_RS28015	0.12	-0.2
6,238,798	+		PFLU_RS28015	0.12	+2.7
6,238,798	+		PFLU_RS28015	0.12	+0.5
6,238,798	+		PFLU_RS28015	0.12	-0.5
6,238,798	+		PFLU_RS28015	0.12	+1.8
6,238,798	+		PFLU_RS28015	0.12	+1.2
6,238,799	-		PFLU_RS28015	0.12	-1.5
6,238,799	-		PFLU_RS28015	0.12	+0.0
6,238,799	-		PFLU_RS28015	0.12	-2.2
6,238,799	-		PFLU_RS28015	0.12	-0.8
6,238,799	-		PFLU_RS28015	0.12	+1.4
6,238,799	-		PFLU_RS28015	0.12	+0.5
6,238,799	-		PFLU_RS28015	0.12	+1.8
6,239,017	+		PFLU_RS28015	0.27	+2.1
6,239,055	+		PFLU_RS28015	0.30	-0.2
6,239,055	+		PFLU_RS28015	0.30	-1.5
6,239,056	-		PFLU_RS28015	0.30	-0.1
6,239,056	-		PFLU_RS28015	0.30	-0.6
6,239,116	+		PFLU_RS28015	0.34	+2.7
6,239,116	+		PFLU_RS28015	0.34	-1.3
6,239,116	+		PFLU_RS28015	0.34	+0.4
6,239,116	+		PFLU_RS28015	0.34	-0.8
6,239,116	+		PFLU_RS28015	0.34	-0.2
6,239,116	+		PFLU_RS28015	0.34	-1.4
6,239,116	+		PFLU_RS28015	0.34	-1.6
6,239,117	-		PFLU_RS28015	0.34	+0.9
6,239,117	-		PFLU_RS28015	0.34	-1.3
6,239,117	-		PFLU_RS28015	0.34	-2.4
6,239,117	-		PFLU_RS28015	0.34	+2.5
6,239,117	-		PFLU_RS28015	0.34	-0.1
6,239,117	-		PFLU_RS28015	0.34	-1.5
6,239,173	+		PFLU_RS28015	0.38	+0.4
6,239,173	+		PFLU_RS28015	0.38	-0.5
6,239,173	+		PFLU_RS28015	0.38	-2.5
6,239,173	+		PFLU_RS28015	0.38	-2.4
6,239,173	+		PFLU_RS28015	0.38	+2.0
6,239,174	-		PFLU_RS28015	0.38	-0.3
6,239,174	-		PFLU_RS28015	0.38	-1.6
6,239,174	-		PFLU_RS28015	0.38	-0.7
6,239,174	-		PFLU_RS28015	0.38	-1.4
6,239,202	-		PFLU_RS28015	0.40	-2.4
6,239,362	+		PFLU_RS28015	0.51	+1.3