Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22010

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
4,953,519	+		PFLU_RS22005	0.32	-1.4
4,953,519	+		PFLU_RS22005	0.32	-1.2
4,953,519	+		PFLU_RS22005	0.32	-0.8
4,953,519	+		PFLU_RS22005	0.32	-0.5
4,953,520	-		PFLU_RS22005	0.32	-1.5
4,953,587	+		PFLU_RS22005	0.37	-1.7
4,953,587	+		PFLU_RS22005	0.37	-1.0
4,953,587	+		PFLU_RS22005	0.37	+0.0
4,953,587	+		PFLU_RS22005	0.37	+3.3
4,953,587	+		PFLU_RS22005	0.37	-2.6
4,953,588	-		PFLU_RS22005	0.37	+0.3
4,953,588	-		PFLU_RS22005	0.37	+0.8
4,953,588	-		PFLU_RS22005	0.37	-1.1
4,953,588	-		PFLU_RS22005	0.37	-1.2
4,953,588	-		PFLU_RS22005	0.37	+0.3
4,953,588	-		PFLU_RS22005	0.37	+0.0
4,953,827	+		PFLU_RS22005	0.54	-1.2
4,953,827	+		PFLU_RS22005	0.54	-1.4
4,953,827	+		PFLU_RS22005	0.54	-0.5
4,953,827	+		PFLU_RS22005	0.54	+0.8
4,953,828	-		PFLU_RS22005	0.54	-0.7
4,953,828	-		PFLU_RS22005	0.54	-1.7
4,953,828	-		PFLU_RS22005	0.54	+0.2
4,953,835	+		PFLU_RS22005	0.54	-2.2
4,953,836	-		PFLU_RS22005	0.54	-0.7
4,953,836	-		PFLU_RS22005	0.54	-0.2
4,954,111	+		PFLU_RS22005	0.73	-1.8
4,954,111	+		PFLU_RS22005	0.73	-1.6
4,954,111	+		PFLU_RS22005	0.73	+1.5
4,954,111	+		PFLU_RS22005	0.73	-1.7
4,954,111	+		PFLU_RS22005	0.73	-0.7
4,954,111	+		PFLU_RS22005	0.73	-2.0
4,954,111	+		PFLU_RS22005	0.73	-0.7
4,954,111	+		PFLU_RS22005	0.73	-0.5
4,954,111	+		PFLU_RS22005	0.73	+0.0
4,954,111	+		PFLU_RS22005	0.73	-1.9
4,954,111	+		PFLU_RS22005	0.73	+0.0
4,954,112	-		PFLU_RS22005	0.73	-0.5
4,954,112	-		PFLU_RS22005	0.73	-1.2
4,954,112	-		PFLU_RS22005	0.73	-1.7
4,954,112	-		PFLU_RS22005	0.73	-3.3
4,954,112	-		PFLU_RS22005	0.73	+4.7
4,954,112	-		PFLU_RS22005	0.73	-1.0
4,954,112	-		PFLU_RS22005	0.73	+2.9
4,954,184	+		PFLU_RS22005	0.78	-0.5
4,954,184	+		PFLU_RS22005	0.78	-0.2
4,954,184	+		PFLU_RS22005	0.78	+0.8
4,954,184	+		PFLU_RS22005	0.78	+0.0
4,954,185	-		PFLU_RS22005	0.78	-1.7
4,954,185	-		PFLU_RS22005	0.78	-1.6
4,954,185	-		PFLU_RS22005	0.78	-2.1
4,954,185	-		PFLU_RS22005	0.78	-0.7
4,954,185	-		PFLU_RS22005	0.78	+1.3
4,954,212	+		PFLU_RS22005	0.80	+1.3
4,954,212	+		PFLU_RS22005	0.80	+0.3
4,954,212	+		PFLU_RS22005	0.80	+1.3
4,954,212	+		PFLU_RS22005	0.80	+0.0
4,954,212	+		PFLU_RS22005	0.80	-1.9
4,954,212	+		PFLU_RS22005	0.80	-0.5
4,954,212	+		PFLU_RS22005	0.80	-0.8
4,954,213	-		PFLU_RS22005	0.80	-1.7
4,954,213	-		PFLU_RS22005	0.80	-0.1
4,954,213	-		PFLU_RS22005	0.80	+0.8
4,954,213	-		PFLU_RS22005	0.80	-1.6
4,954,213	-		PFLU_RS22005	0.80	-1.6
4,954,213	-		PFLU_RS22005	0.80	-1.8
4,954,213	-		PFLU_RS22005	0.80	+2.3
4,954,213	-		PFLU_RS22005	0.80	-1.5
4,954,284	+		PFLU_RS22005	0.85	-0.1
4,954,284	+		PFLU_RS22005	0.85	-2.1
4,954,285	-		PFLU_RS22005	0.85	-0.8
4,954,285	-		PFLU_RS22005	0.85	+0.2
4,954,421	-				+0.0
4,954,452	+				-0.8
4,954,452	+				-2.0
4,954,452	+				-0.7
4,954,453	-				+0.8
4,954,453	-				-1.4
4,954,453	-				+0.0
4,954,495	-				-0.7
4,954,511	+				-0.5
4,954,511	+				-1.8
4,954,512	-				+0.3
4,954,512	-				+1.7
4,954,513	+				+0.0
4,954,513	+				+1.6
4,954,513	+				-0.7
4,954,513	+				+1.5
4,954,513	+				-1.5
4,954,514	-				-2.8
4,954,514	-				+0.2
4,954,514	-				+0.5
4,954,514	-				-1.7
4,954,514	-				+0.3
4,954,514	-				-1.1
4,954,514	-				+0.5
4,954,514	-				-2.2
4,954,580	+				-1.8
4,954,580	+				-2.2
4,954,580	+				+0.0
4,954,581	-				+0.8
4,954,634	-		PFLU_RS22010	0.14	-1.5
4,954,671	+		PFLU_RS22010	0.18	+0.0
4,954,671	+		PFLU_RS22010	0.18	+0.2
4,954,672	-		PFLU_RS22010	0.18	-1.0
4,954,672	-		PFLU_RS22010	0.18	-1.2
4,954,875	+		PFLU_RS22010	0.38	-1.1
4,954,875	+		PFLU_RS22010	0.38	-2.2
4,954,875	+		PFLU_RS22010	0.38	+0.0
4,954,875	+		PFLU_RS22010	0.38	-1.7
4,954,876	-		PFLU_RS22010	0.38	-1.0
4,954,876	-		PFLU_RS22010	0.38	-0.2
4,954,876	-		PFLU_RS22010	0.38	+0.0
4,954,876	-		PFLU_RS22010	0.38	+0.9
4,954,876	-		PFLU_RS22010	0.38	+0.8
4,954,876	-		PFLU_RS22010	0.38	-0.8
4,954,914	-		PFLU_RS22010	0.42	-1.5
4,955,164	+		PFLU_RS22010	0.67	-1.9
4,955,164	+		PFLU_RS22010	0.67	-0.2
4,955,165	-		PFLU_RS22010	0.67	+0.3
4,955,200	+		PFLU_RS22010	0.71	-0.7
4,955,287	-		PFLU_RS22010	0.80	-0.2
4,955,287	-		PFLU_RS22010	0.80	-0.5
4,955,287	-		PFLU_RS22010	0.80	+0.3
4,955,287	-		PFLU_RS22010	0.80	+0.0
4,955,287	-		PFLU_RS22010	0.80	-1.1
4,955,287	-		PFLU_RS22010	0.80	+1.3
4,955,287	-		PFLU_RS22010	0.80	-1.0
4,955,287	-		PFLU_RS22010	0.80	+0.3
4,955,302	+		PFLU_RS22010	0.81	-3.1
4,955,305	+		PFLU_RS22010	0.82	+1.0
4,955,306	-		PFLU_RS22010	0.82	-0.8
4,955,306	-		PFLU_RS22010	0.82	+2.3
4,955,306	-		PFLU_RS22010	0.82	-2.2
4,955,486	+				+1.3
4,955,486	+				+2.3
4,955,486	+				-2.6
4,955,486	+				-1.2
4,955,486	+				-0.1
4,955,486	+				+4.3
4,955,486	+				+0.5
4,955,486	+				+0.0
4,955,487	-				-0.1
4,955,487	-				-1.2
4,955,487	-				+4.3
4,955,487	-				+2.8
4,955,487	-				+3.5
4,955,487	-				+1.0
4,955,506	+				+0.2
4,955,506	+				+1.3
4,955,506	+				-2.1
4,955,506	+				+2.8
4,955,506	+				+4.7
4,955,507	-				-1.6
4,955,507	-				-0.7
4,955,507	-				+1.6
4,955,507	-				-0.5
4,955,507	-				+0.1
4,955,507	-				+1.3
4,955,507	-				-1.6
4,955,507	-				-1.0
4,955,507	-				+0.7
4,955,507	-				+3.2
4,955,507	-				-2.4
4,955,507	-				-0.5
4,955,527	+				-1.0
4,955,528	-				-1.4
4,955,528	-				-1.9
4,955,528	-				+0.8
4,955,624	+		PFLU_RS22015	0.16	+0.0
4,955,624	+		PFLU_RS22015	0.16	-2.0
4,955,624	+		PFLU_RS22015	0.16	+0.8
4,955,624	+		PFLU_RS22015	0.16	-1.0
4,955,625	-		PFLU_RS22015	0.16	+1.3
4,955,625	-		PFLU_RS22015	0.16	-0.5
4,955,625	-		PFLU_RS22015	0.16	-1.2
4,955,625	-		PFLU_RS22015	0.16	+1.3
4,955,762	+		PFLU_RS22015	0.31	-1.0
4,955,763	-		PFLU_RS22015	0.31	-0.7
4,955,763	-		PFLU_RS22015	0.31	-1.2
4,955,763	-		PFLU_RS22015	0.31	-1.4
4,955,792	+		PFLU_RS22015	0.34	-1.0
4,955,792	+		PFLU_RS22015	0.34	-2.3
4,955,792	+		PFLU_RS22015	0.34	-1.1
4,955,792	+		PFLU_RS22015	0.34	-0.2
4,955,792	+		PFLU_RS22015	0.34	-0.8
4,955,792	+		PFLU_RS22015	0.34	-1.2
4,955,792	+		PFLU_RS22015	0.34	-2.2
4,955,792	+		PFLU_RS22015	0.34	-1.1
4,955,792	+		PFLU_RS22015	0.34	-1.9
4,955,792	+		PFLU_RS22015	0.34	-1.8
4,955,792	+		PFLU_RS22015	0.34	-2.2
4,955,792	+		PFLU_RS22015	0.34	+0.3
4,955,792	+		PFLU_RS22015	0.34	-2.9
4,955,792	+		PFLU_RS22015	0.34	-0.8
4,955,792	+		PFLU_RS22015	0.34	+0.3
4,955,792	+		PFLU_RS22015	0.34	-1.0
4,955,792	+		PFLU_RS22015	0.34	-0.7
4,955,792	+		PFLU_RS22015	0.34	+1.3
4,955,793	-		PFLU_RS22015	0.35	-1.2
4,955,793	-		PFLU_RS22015	0.35	+2.0
4,955,793	-		PFLU_RS22015	0.35	+0.0
4,955,793	-		PFLU_RS22015	0.35	-1.7
4,955,793	-		PFLU_RS22015	0.35	-0.8
4,955,793	-		PFLU_RS22015	0.35	-1.7
4,955,793	-		PFLU_RS22015	0.35	-0.5
4,955,793	-		PFLU_RS22015	0.35	-0.5
4,955,793	-		PFLU_RS22015	0.35	-1.7
4,955,793	-		PFLU_RS22015	0.35	-1.8
4,955,793	-		PFLU_RS22015	0.35	-1.1
4,955,793	-		PFLU_RS22015	0.35	-0.7
4,955,793	-		PFLU_RS22015	0.35	+1.8
4,955,793	-		PFLU_RS22015	0.35	-0.7
4,955,793	-		PFLU_RS22015	0.35	-0.7
4,955,891	+		PFLU_RS22015	0.45	+0.0
4,955,892	-		PFLU_RS22015	0.45	+0.0
4,955,899	+		PFLU_RS22015	0.46	-2.7
4,955,899	+		PFLU_RS22015	0.46	-1.1
4,955,899	+		PFLU_RS22015	0.46	-1.6
4,955,899	+		PFLU_RS22015	0.46	-1.0
4,955,900	-		PFLU_RS22015	0.46	-2.5
4,955,900	-		PFLU_RS22015	0.46	-1.9
4,955,900	-		PFLU_RS22015	0.46	+1.1
4,955,900	-		PFLU_RS22015	0.46	-0.2
4,955,900	-		PFLU_RS22015	0.46	-1.9
4,956,035	+		PFLU_RS22015	0.61	+1.3
4,956,035	+		PFLU_RS22015	0.61	-1.2
4,956,036	-		PFLU_RS22015	0.61	+0.0
4,956,036	-		PFLU_RS22015	0.61	-1.5
4,956,036	-		PFLU_RS22015	0.61	+0.0
4,956,036	-		PFLU_RS22015	0.61	+0.0
4,956,036	-		PFLU_RS22015	0.61	-1.1
4,956,134	+		PFLU_RS22015	0.72	-1.1
4,956,134	+		PFLU_RS22015	0.72	-1.2
4,956,166	-		PFLU_RS22015	0.76	-0.2
4,956,167	+		PFLU_RS22015	0.76	-0.2
4,956,167	+		PFLU_RS22015	0.76	+0.8
4,956,167	+		PFLU_RS22015	0.76	-1.2
4,956,167	+		PFLU_RS22015	0.76	-0.5
4,956,167	+		PFLU_RS22015	0.76	+0.8
4,956,168	-		PFLU_RS22015	0.76	-2.9
4,956,168	-		PFLU_RS22015	0.76	+0.0
4,956,168	-		PFLU_RS22015	0.76	-1.8
4,956,412	+				+0.3
4,956,412	+				-0.3
4,956,412	+				+1.3
4,956,413	-				-1.6
4,956,413	-				-0.7
4,956,413	-				+0.9
4,956,413	-				+0.7
4,956,413	-				-1.1
4,956,413	-				-0.7
4,956,413	-				+1.1
4,956,413	-				-2.2
4,956,413	-				-1.9