Experiment: chicken 21; day 7; diet=StandardDiet; sample=Small_intestine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13165 and BBR_RS13170 are separated by 191 nucleotides BBR_RS13170 and BBR_RS13175 are separated by 39 nucleotides
BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591
_RS13165
BBR_RS13170: BBR_RS13170 - alanine racemase, at 730,783 to 732,141
_RS13170
BBR_RS13175: BBR_RS13175 - deoxyguanosinetriphosphate triphosphohydrolase, at 732,181 to 733,467
_RS13175
Position (kb) 730
731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 729.788 kb on - strand, within BBR_RS13165 at 729.794 kb on + strand, within BBR_RS13165 at 729.846 kb on - strand, within BBR_RS13165 at 729.846 kb on - strand, within BBR_RS13165 at 729.928 kb on - strand, within BBR_RS13165 at 729.997 kb on - strand, within BBR_RS13165 at 730.020 kb on - strand, within BBR_RS13165 at 730.066 kb on + strand, within BBR_RS13165 at 730.070 kb on - strand, within BBR_RS13165 at 730.189 kb on + strand, within BBR_RS13165 at 730.189 kb on + strand, within BBR_RS13165 at 730.196 kb on + strand, within BBR_RS13165 at 730.247 kb on + strand, within BBR_RS13165 at 730.325 kb on + strand, within BBR_RS13165 at 730.333 kb on - strand, within BBR_RS13165 at 730.368 kb on + strand, within BBR_RS13165 at 730.368 kb on + strand, within BBR_RS13165 at 730.376 kb on - strand, within BBR_RS13165 at 730.376 kb on - strand, within BBR_RS13165 at 730.424 kb on - strand, within BBR_RS13165 at 730.451 kb on - strand at 730.484 kb on - strand at 730.518 kb on - strand at 730.532 kb on + strand at 730.532 kb on + strand at 730.540 kb on - strand at 730.540 kb on - strand at 730.540 kb on - strand at 730.670 kb on + strand at 730.827 kb on + strand at 730.827 kb on + strand at 730.827 kb on + strand at 730.827 kb on + strand at 732.136 kb on + strand at 732.136 kb on + strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.171 kb on + strand at 732.171 kb on + strand at 732.215 kb on - strand at 732.222 kb on + strand at 732.230 kb on - strand at 732.269 kb on + strand at 732.270 kb on + strand at 732.278 kb on - strand at 732.278 kb on - strand at 732.310 kb on - strand, within BBR_RS13175 at 732.343 kb on - strand, within BBR_RS13175 at 732.391 kb on + strand, within BBR_RS13175 at 732.394 kb on - strand, within BBR_RS13175 at 732.412 kb on - strand, within BBR_RS13175 at 732.423 kb on - strand, within BBR_RS13175 at 732.450 kb on - strand, within BBR_RS13175 at 732.513 kb on + strand, within BBR_RS13175 at 732.574 kb on + strand, within BBR_RS13175 at 732.641 kb on + strand, within BBR_RS13175 at 732.714 kb on + strand, within BBR_RS13175 at 732.763 kb on + strand, within BBR_RS13175 at 732.851 kb on + strand, within BBR_RS13175 at 732.858 kb on + strand, within BBR_RS13175 at 732.977 kb on + strand, within BBR_RS13175 at 732.992 kb on - strand, within BBR_RS13175 at 733.005 kb on + strand, within BBR_RS13175 at 733.015 kb on + strand, within BBR_RS13175 at 733.020 kb on + strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.048 kb on + strand, within BBR_RS13175
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 21; day 7; diet=StandardDiet; sample=Small_intestine remove 729,788 - BBR_RS13165 0.45 +2.0 729,794 + BBR_RS13165 0.45 +1.5 729,846 - BBR_RS13165 0.49 +0.9 729,846 - BBR_RS13165 0.49 +0.5 729,928 - BBR_RS13165 0.54 -0.0 729,997 - BBR_RS13165 0.59 +0.9 730,020 - BBR_RS13165 0.61 -0.2 730,066 + BBR_RS13165 0.64 +1.4 730,070 - BBR_RS13165 0.64 -0.5 730,189 + BBR_RS13165 0.72 -0.5 730,189 + BBR_RS13165 0.72 +0.6 730,196 + BBR_RS13165 0.73 -1.7 730,247 + BBR_RS13165 0.76 -1.0 730,325 + BBR_RS13165 0.82 -1.2 730,333 - BBR_RS13165 0.82 -1.7 730,368 + BBR_RS13165 0.85 -0.1 730,368 + BBR_RS13165 0.85 +1.2 730,376 - BBR_RS13165 0.85 -0.7 730,376 - BBR_RS13165 0.85 -0.1 730,424 - BBR_RS13165 0.88 +0.8 730,451 - +0.4 730,484 - +1.6 730,518 - +1.6 730,532 + +3.1 730,532 + +1.3 730,540 - -0.8 730,540 - +0.1 730,540 - -0.6 730,670 + +1.7 730,827 + -1.7 730,827 + -1.5 730,827 + -1.1 730,827 + -0.9 732,136 + +0.4 732,136 + +0.5 732,144 - +0.0 732,144 - +1.9 732,144 - +3.3 732,144 - +2.3 732,171 + +0.3 732,171 + +1.9 732,215 - +3.1 732,222 + -0.2 732,230 - +1.9 732,269 + -1.7 732,270 + +0.5 732,278 - -1.5 732,278 - -0.5 732,310 - BBR_RS13175 0.10 +0.7 732,343 - BBR_RS13175 0.13 -1.0 732,391 + BBR_RS13175 0.16 -0.5 732,394 - BBR_RS13175 0.17 -1.9 732,412 - BBR_RS13175 0.18 +0.1 732,423 - BBR_RS13175 0.19 -0.8 732,450 - BBR_RS13175 0.21 +0.5 732,513 + BBR_RS13175 0.26 -2.0 732,574 + BBR_RS13175 0.31 -0.8 732,641 + BBR_RS13175 0.36 -0.4 732,714 + BBR_RS13175 0.41 -0.3 732,763 + BBR_RS13175 0.45 -0.0 732,851 + BBR_RS13175 0.52 -0.6 732,858 + BBR_RS13175 0.53 -0.8 732,977 + BBR_RS13175 0.62 -3.5 732,992 - BBR_RS13175 0.63 +0.2 733,005 + BBR_RS13175 0.64 +0.2 733,015 + BBR_RS13175 0.65 -1.3 733,020 + BBR_RS13175 0.65 -1.4 733,028 - BBR_RS13175 0.66 +0.8 733,028 - BBR_RS13175 0.66 +0.3 733,028 - BBR_RS13175 0.66 -0.3 733,048 + BBR_RS13175 0.67 +1.5
Or see this region's nucleotide sequence