Experiment: chicken 21; day 7; diet=StandardDiet; sample=Small_intestine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12400 and BBR_RS12405 are separated by 436 nucleotides BBR_RS12405 and BBR_RS12410 are separated by 124 nucleotides
BBR_RS12400: BBR_RS12400 - nicotinate phosphoribosyltransferase, at 530,406 to 531,728
_RS12400
BBR_RS12405: BBR_RS12405 - ribonuclease PH, at 532,165 to 532,929
_RS12405
BBR_RS12410: BBR_RS12410 - non-canonical purine NTP pyrophosphatase, at 533,054 to 533,827
_RS12410
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 531.169 kb on + strand, within BBR_RS12400 at 531.188 kb on + strand, within BBR_RS12400 at 531.188 kb on + strand, within BBR_RS12400 at 531.188 kb on + strand, within BBR_RS12400 at 531.188 kb on + strand, within BBR_RS12400 at 531.196 kb on - strand, within BBR_RS12400 at 531.196 kb on - strand, within BBR_RS12400 at 531.196 kb on - strand, within BBR_RS12400 at 531.238 kb on + strand, within BBR_RS12400 at 531.246 kb on - strand, within BBR_RS12400 at 531.246 kb on - strand, within BBR_RS12400 at 531.260 kb on + strand, within BBR_RS12400 at 531.265 kb on + strand, within BBR_RS12400 at 531.280 kb on - strand, within BBR_RS12400 at 531.313 kb on - strand, within BBR_RS12400 at 531.316 kb on + strand, within BBR_RS12400 at 531.316 kb on + strand, within BBR_RS12400 at 531.319 kb on - strand, within BBR_RS12400 at 531.327 kb on - strand, within BBR_RS12400 at 531.327 kb on - strand, within BBR_RS12400 at 531.329 kb on - strand, within BBR_RS12400 at 531.342 kb on + strand, within BBR_RS12400 at 531.350 kb on - strand, within BBR_RS12400 at 531.350 kb on - strand, within BBR_RS12400 at 531.357 kb on + strand, within BBR_RS12400 at 531.357 kb on + strand, within BBR_RS12400 at 531.360 kb on + strand, within BBR_RS12400 at 531.368 kb on - strand, within BBR_RS12400 at 531.368 kb on - strand, within BBR_RS12400 at 531.369 kb on + strand, within BBR_RS12400 at 531.425 kb on + strand, within BBR_RS12400 at 531.426 kb on + strand, within BBR_RS12400 at 531.430 kb on + strand, within BBR_RS12400 at 531.433 kb on - strand, within BBR_RS12400 at 531.438 kb on - strand, within BBR_RS12400 at 531.476 kb on - strand, within BBR_RS12400 at 531.495 kb on + strand, within BBR_RS12400 at 531.538 kb on - strand, within BBR_RS12400 at 531.540 kb on - strand, within BBR_RS12400 at 531.558 kb on - strand, within BBR_RS12400 at 531.589 kb on - strand, within BBR_RS12400 at 531.615 kb on - strand at 531.635 kb on + strand at 531.635 kb on - strand at 531.636 kb on - strand at 531.638 kb on - strand at 531.638 kb on - strand at 531.638 kb on - strand at 531.638 kb on - strand at 531.648 kb on + strand at 531.648 kb on + strand at 531.649 kb on - strand at 531.680 kb on - strand at 531.687 kb on - strand at 531.703 kb on + strand at 531.721 kb on - strand at 531.727 kb on + strand at 531.788 kb on + strand at 531.789 kb on + strand at 531.895 kb on + strand at 531.895 kb on + strand at 531.918 kb on - strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.025 kb on - strand at 532.033 kb on - strand at 532.056 kb on + strand at 532.061 kb on + strand at 532.061 kb on + strand at 532.061 kb on + strand at 532.066 kb on + strand at 532.069 kb on - strand at 532.074 kb on - strand at 532.078 kb on + strand at 532.093 kb on - strand at 532.105 kb on - strand at 532.105 kb on - strand at 532.117 kb on - strand at 532.122 kb on - strand at 532.135 kb on + strand at 532.135 kb on + strand at 532.149 kb on - strand at 532.156 kb on - strand at 532.161 kb on - strand at 532.271 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.288 kb on - strand, within BBR_RS12405 at 532.288 kb on - strand, within BBR_RS12405 at 532.328 kb on + strand, within BBR_RS12405 at 532.342 kb on + strand, within BBR_RS12405 at 532.360 kb on + strand, within BBR_RS12405 at 532.377 kb on + strand, within BBR_RS12405 at 532.409 kb on + strand, within BBR_RS12405 at 532.434 kb on - strand, within BBR_RS12405 at 532.563 kb on - strand, within BBR_RS12405 at 532.563 kb on - strand, within BBR_RS12405 at 532.585 kb on - strand, within BBR_RS12405 at 532.585 kb on - strand, within BBR_RS12405 at 532.587 kb on - strand, within BBR_RS12405 at 532.606 kb on - strand, within BBR_RS12405 at 532.626 kb on + strand, within BBR_RS12405 at 532.639 kb on - strand, within BBR_RS12405 at 532.654 kb on - strand, within BBR_RS12405 at 532.658 kb on - strand, within BBR_RS12405 at 532.669 kb on + strand, within BBR_RS12405 at 532.677 kb on - strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.749 kb on - strand, within BBR_RS12405 at 532.795 kb on - strand, within BBR_RS12405 at 532.839 kb on - strand, within BBR_RS12405 at 532.848 kb on + strand, within BBR_RS12405 at 532.858 kb on + strand at 532.898 kb on - strand at 532.898 kb on - strand at 532.913 kb on + strand at 532.915 kb on - strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.926 kb on - strand at 532.926 kb on - strand at 532.930 kb on + strand at 532.931 kb on - strand at 532.959 kb on - strand at 532.959 kb on - strand at 532.961 kb on + strand at 532.963 kb on - strand at 532.972 kb on + strand at 532.987 kb on - strand at 532.995 kb on - strand at 532.995 kb on - strand at 533.004 kb on + strand at 533.009 kb on + strand at 533.012 kb on - strand at 533.062 kb on - strand at 533.128 kb on - strand at 533.147 kb on + strand, within BBR_RS12410 at 533.202 kb on - strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.229 kb on - strand, within BBR_RS12410 at 533.237 kb on + strand, within BBR_RS12410 at 533.237 kb on + strand, within BBR_RS12410 at 533.274 kb on + strand, within BBR_RS12410 at 533.274 kb on + strand, within BBR_RS12410 at 533.346 kb on + strand, within BBR_RS12410 at 533.364 kb on - strand, within BBR_RS12410 at 533.364 kb on - strand, within BBR_RS12410 at 533.369 kb on - strand, within BBR_RS12410 at 533.369 kb on - strand, within BBR_RS12410 at 533.372 kb on - strand, within BBR_RS12410 at 533.392 kb on - strand, within BBR_RS12410 at 533.443 kb on - strand, within BBR_RS12410 at 533.451 kb on + strand, within BBR_RS12410 at 533.461 kb on - strand, within BBR_RS12410 at 533.514 kb on - strand, within BBR_RS12410 at 533.521 kb on + strand, within BBR_RS12410 at 533.583 kb on + strand, within BBR_RS12410 at 533.585 kb on + strand, within BBR_RS12410 at 533.585 kb on + strand, within BBR_RS12410 at 533.645 kb on + strand, within BBR_RS12410 at 533.689 kb on + strand, within BBR_RS12410 at 533.695 kb on + strand, within BBR_RS12410 at 533.697 kb on - strand, within BBR_RS12410 at 533.707 kb on + strand, within BBR_RS12410 at 533.713 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.725 kb on + strand, within BBR_RS12410 at 533.728 kb on - strand, within BBR_RS12410 at 533.782 kb on + strand at 533.824 kb on + strand at 533.853 kb on + strand at 533.856 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.868 kb on - strand at 533.868 kb on - strand at 533.913 kb on + strand at 533.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 21; day 7; diet=StandardDiet; sample=Small_intestine remove 531,169 + BBR_RS12400 0.58 +0.3 531,188 + BBR_RS12400 0.59 -3.1 531,188 + BBR_RS12400 0.59 +0.8 531,188 + BBR_RS12400 0.59 -0.1 531,188 + BBR_RS12400 0.59 +0.2 531,196 - BBR_RS12400 0.60 +0.5 531,196 - BBR_RS12400 0.60 +0.8 531,196 - BBR_RS12400 0.60 +1.0 531,238 + BBR_RS12400 0.63 -1.0 531,246 - BBR_RS12400 0.63 +0.7 531,246 - BBR_RS12400 0.63 -1.0 531,260 + BBR_RS12400 0.65 +4.1 531,265 + BBR_RS12400 0.65 +0.9 531,280 - BBR_RS12400 0.66 -2.0 531,313 - BBR_RS12400 0.69 -0.8 531,316 + BBR_RS12400 0.69 -0.4 531,316 + BBR_RS12400 0.69 -0.3 531,319 - BBR_RS12400 0.69 -0.2 531,327 - BBR_RS12400 0.70 +0.6 531,327 - BBR_RS12400 0.70 +1.3 531,329 - BBR_RS12400 0.70 -1.6 531,342 + BBR_RS12400 0.71 +2.6 531,350 - BBR_RS12400 0.71 -0.6 531,350 - BBR_RS12400 0.71 -0.4 531,357 + BBR_RS12400 0.72 +1.8 531,357 + BBR_RS12400 0.72 +2.6 531,360 + BBR_RS12400 0.72 +1.4 531,368 - BBR_RS12400 0.73 -0.5 531,368 - BBR_RS12400 0.73 +0.7 531,369 + BBR_RS12400 0.73 -1.1 531,425 + BBR_RS12400 0.77 -1.1 531,426 + BBR_RS12400 0.77 +0.9 531,430 + BBR_RS12400 0.77 +1.8 531,433 - BBR_RS12400 0.78 -1.4 531,438 - BBR_RS12400 0.78 +3.0 531,476 - BBR_RS12400 0.81 +0.5 531,495 + BBR_RS12400 0.82 +1.0 531,538 - BBR_RS12400 0.86 +2.6 531,540 - BBR_RS12400 0.86 +0.7 531,558 - BBR_RS12400 0.87 -0.8 531,589 - BBR_RS12400 0.89 -0.6 531,615 - -2.1 531,635 + -0.5 531,635 - +0.8 531,636 - -1.1 531,638 - +2.9 531,638 - -1.3 531,638 - +1.7 531,638 - +2.3 531,648 + +2.3 531,648 + +1.4 531,649 - +0.7 531,680 - -0.6 531,687 - -0.5 531,703 + +1.2 531,721 - +2.0 531,727 + -0.5 531,788 + -1.7 531,789 + +0.4 531,895 + -0.7 531,895 + -0.7 531,918 - +2.5 532,023 - +1.9 532,023 - -1.1 532,025 - -1.6 532,033 - +1.1 532,056 + -2.1 532,061 + +1.0 532,061 + -0.6 532,061 + +0.5 532,066 + -1.7 532,069 - -1.7 532,074 - +0.1 532,078 + -0.5 532,093 - +1.3 532,105 - -2.1 532,105 - -2.0 532,117 - -0.3 532,122 - -2.3 532,135 + +1.1 532,135 + -1.2 532,149 - -0.8 532,156 - +0.3 532,161 - +1.4 532,271 + BBR_RS12405 0.14 +1.0 532,280 + BBR_RS12405 0.15 +1.2 532,280 + BBR_RS12405 0.15 -0.3 532,280 + BBR_RS12405 0.15 -0.4 532,280 + BBR_RS12405 0.15 -1.2 532,288 - BBR_RS12405 0.16 +0.0 532,288 - BBR_RS12405 0.16 -0.7 532,328 + BBR_RS12405 0.21 -1.9 532,342 + BBR_RS12405 0.23 +0.7 532,360 + BBR_RS12405 0.25 +0.0 532,377 + BBR_RS12405 0.28 +1.4 532,409 + BBR_RS12405 0.32 +0.2 532,434 - BBR_RS12405 0.35 -1.3 532,563 - BBR_RS12405 0.52 -0.5 532,563 - BBR_RS12405 0.52 +0.7 532,585 - BBR_RS12405 0.55 -0.9 532,585 - BBR_RS12405 0.55 -2.0 532,587 - BBR_RS12405 0.55 -0.6 532,606 - BBR_RS12405 0.58 +1.2 532,626 + BBR_RS12405 0.60 -0.3 532,639 - BBR_RS12405 0.62 +0.1 532,654 - BBR_RS12405 0.64 -0.8 532,658 - BBR_RS12405 0.64 -2.0 532,669 + BBR_RS12405 0.66 -1.8 532,677 - BBR_RS12405 0.67 +0.1 532,695 + BBR_RS12405 0.69 -1.4 532,695 + BBR_RS12405 0.69 -1.0 532,695 + BBR_RS12405 0.69 -1.8 532,749 - BBR_RS12405 0.76 -1.7 532,795 - BBR_RS12405 0.82 -0.3 532,839 - BBR_RS12405 0.88 -0.1 532,848 + BBR_RS12405 0.89 +0.2 532,858 + -1.8 532,898 - -0.8 532,898 - -0.5 532,913 + -0.3 532,915 - -0.4 532,918 + -1.5 532,918 + -1.2 532,918 + -0.9 532,918 + -0.6 532,918 + +0.1 532,926 - -1.0 532,926 - +0.2 532,930 + +1.4 532,931 - -0.7 532,959 - -1.8 532,959 - -0.7 532,961 + +0.8 532,963 - +1.5 532,972 + -0.8 532,987 - +0.3 532,995 - -1.5 532,995 - +4.2 533,004 + -0.8 533,009 + -0.8 533,012 - +1.2 533,062 - -0.4 533,128 - -0.2 533,147 + BBR_RS12410 0.12 -1.6 533,202 - BBR_RS12410 0.19 +1.5 533,221 + BBR_RS12410 0.22 -1.6 533,221 + BBR_RS12410 0.22 +0.8 533,221 + BBR_RS12410 0.22 +2.5 533,229 - BBR_RS12410 0.23 -2.0 533,237 + BBR_RS12410 0.24 -0.8 533,237 + BBR_RS12410 0.24 -0.3 533,274 + BBR_RS12410 0.28 +0.3 533,274 + BBR_RS12410 0.28 +1.2 533,346 + BBR_RS12410 0.38 -1.0 533,364 - BBR_RS12410 0.40 +0.7 533,364 - BBR_RS12410 0.40 +2.1 533,369 - BBR_RS12410 0.41 +0.7 533,369 - BBR_RS12410 0.41 -0.7 533,372 - BBR_RS12410 0.41 +1.2 533,392 - BBR_RS12410 0.44 +0.5 533,443 - BBR_RS12410 0.50 -1.9 533,451 + BBR_RS12410 0.51 +1.5 533,461 - BBR_RS12410 0.53 +0.1 533,514 - BBR_RS12410 0.59 -0.3 533,521 + BBR_RS12410 0.60 -1.5 533,583 + BBR_RS12410 0.68 +3.0 533,585 + BBR_RS12410 0.69 -0.2 533,585 + BBR_RS12410 0.69 +2.5 533,645 + BBR_RS12410 0.76 -1.0 533,689 + BBR_RS12410 0.82 +1.7 533,695 + BBR_RS12410 0.83 -0.7 533,697 - BBR_RS12410 0.83 +1.2 533,707 + BBR_RS12410 0.84 -1.0 533,713 + BBR_RS12410 0.85 +1.5 533,720 + BBR_RS12410 0.86 +1.0 533,720 + BBR_RS12410 0.86 +2.6 533,720 + BBR_RS12410 0.86 +2.5 533,725 + BBR_RS12410 0.87 -0.1 533,728 - BBR_RS12410 0.87 +0.0 533,782 + -1.9 533,824 + +0.2 533,853 + -0.3 533,856 - +3.7 533,859 - +1.0 533,859 - +2.4 533,859 - +2.5 533,859 - -1.6 533,860 + -0.3 533,860 + -2.5 533,860 + -0.0 533,860 + -0.5 533,868 - +0.0 533,868 - -1.6 533,913 + -1.9 533,921 + -0.1
Or see this region's nucleotide sequence