Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28410

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,322,437	+		PFLU_RS28405	0.19	+0.6
6,322,437	+		PFLU_RS28405	0.19	+3.0
6,322,438	-		PFLU_RS28405	0.19	+1.1
6,322,476	-		PFLU_RS28405	0.22	-1.4
6,322,476	-		PFLU_RS28405	0.22	-1.4
6,322,712	-		PFLU_RS28405	0.42	-1.6
6,322,854	+		PFLU_RS28405	0.53	+1.9
6,322,971	+		PFLU_RS28405	0.63	-2.5
6,322,980	+		PFLU_RS28405	0.64	+0.1
6,322,980	+		PFLU_RS28405	0.64	+2.5
6,322,980	+		PFLU_RS28405	0.64	-0.5
6,322,980	+		PFLU_RS28405	0.64	-0.9
6,322,980	+		PFLU_RS28405	0.64	+2.8
6,322,980	+		PFLU_RS28405	0.64	-1.0
6,322,980	+		PFLU_RS28405	0.64	+0.1
6,322,981	-		PFLU_RS28405	0.64	-1.0
6,322,981	-		PFLU_RS28405	0.64	+0.9
6,322,981	-		PFLU_RS28405	0.64	+1.5
6,322,981	-		PFLU_RS28405	0.64	-1.1
6,322,995	+		PFLU_RS28405	0.65	+1.2
6,322,995	+		PFLU_RS28405	0.65	-0.5
6,322,996	-		PFLU_RS28405	0.65	+2.5
6,323,024	+		PFLU_RS28405	0.67	-2.1
6,323,024	+		PFLU_RS28405	0.67	+0.7
6,323,025	-		PFLU_RS28405	0.68	+0.1
6,323,025	-		PFLU_RS28405	0.68	-1.9
6,323,034	+		PFLU_RS28405	0.68	-0.7
6,323,034	+		PFLU_RS28405	0.68	-0.1
6,323,034	+		PFLU_RS28405	0.68	-0.1
6,323,034	+		PFLU_RS28405	0.68	+0.7
6,323,034	+		PFLU_RS28405	0.68	-1.7
6,323,035	-		PFLU_RS28405	0.68	+1.5
6,323,035	-		PFLU_RS28405	0.68	-0.4
6,323,035	-		PFLU_RS28405	0.68	-1.0
6,323,035	-		PFLU_RS28405	0.68	-1.4
6,323,035	-		PFLU_RS28405	0.68	+0.1
6,323,035	-		PFLU_RS28405	0.68	-1.0
6,323,035	-		PFLU_RS28405	0.68	-0.9
6,323,110	+		PFLU_RS28405	0.75	+0.9
6,323,110	+		PFLU_RS28405	0.75	-0.5
6,323,110	+		PFLU_RS28405	0.75	+0.9
6,323,110	+		PFLU_RS28405	0.75	+1.7
6,323,110	+		PFLU_RS28405	0.75	-1.3
6,323,110	+		PFLU_RS28405	0.75	-0.9
6,323,110	+		PFLU_RS28405	0.75	+0.3
6,323,110	+		PFLU_RS28405	0.75	-2.3
6,323,110	+		PFLU_RS28405	0.75	+1.6
6,323,110	+		PFLU_RS28405	0.75	+1.7
6,323,110	+		PFLU_RS28405	0.75	+1.8
6,323,110	+		PFLU_RS28405	0.75	+2.5
6,323,110	+		PFLU_RS28405	0.75	-1.3
6,323,110	+		PFLU_RS28405	0.75	+2.3
6,323,110	+		PFLU_RS28405	0.75	+1.2
6,323,110	+		PFLU_RS28405	0.75	+0.6
6,323,110	+		PFLU_RS28405	0.75	+0.9
6,323,110	+		PFLU_RS28405	0.75	-0.1
6,323,110	+		PFLU_RS28405	0.75	+1.5
6,323,110	+		PFLU_RS28405	0.75	+3.0
6,323,110	+		PFLU_RS28405	0.75	+2.3
6,323,110	+		PFLU_RS28405	0.75	-1.1
6,323,110	+		PFLU_RS28405	0.75	+4.1
6,323,110	+		PFLU_RS28405	0.75	+3.6
6,323,110	+		PFLU_RS28405	0.75	-1.6
6,323,110	+		PFLU_RS28405	0.75	-1.9
6,323,110	+		PFLU_RS28405	0.75	-0.3
6,323,110	+		PFLU_RS28405	0.75	-2.1
6,323,111	-		PFLU_RS28405	0.75	-1.7
6,323,111	-		PFLU_RS28405	0.75	-1.3
6,323,111	-		PFLU_RS28405	0.75	+1.5
6,323,111	-		PFLU_RS28405	0.75	-0.0
6,323,111	-		PFLU_RS28405	0.75	-1.1
6,323,111	-		PFLU_RS28405	0.75	-2.3
6,323,111	-		PFLU_RS28405	0.75	+3.5
6,323,111	-		PFLU_RS28405	0.75	+0.1
6,323,111	-		PFLU_RS28405	0.75	-0.4
6,323,111	-		PFLU_RS28405	0.75	+0.4
6,323,111	-		PFLU_RS28405	0.75	-0.5
6,323,111	-		PFLU_RS28405	0.75	-1.9
6,323,111	-		PFLU_RS28405	0.75	+2.3
6,323,111	-		PFLU_RS28405	0.75	-0.1
6,323,111	-		PFLU_RS28405	0.75	+3.5
6,323,111	-		PFLU_RS28405	0.75	-0.9
6,323,111	-		PFLU_RS28405	0.75	+0.3
6,323,111	-		PFLU_RS28405	0.75	-0.3
6,323,111	-		PFLU_RS28405	0.75	-1.9
6,323,111	-		PFLU_RS28405	0.75	-1.4
6,323,111	-		PFLU_RS28405	0.75	+0.9
6,323,111	-		PFLU_RS28405	0.75	-0.4
6,323,111	-		PFLU_RS28405	0.75	-1.3
6,323,111	-		PFLU_RS28405	0.75	-0.5
6,323,111	-		PFLU_RS28405	0.75	-1.3
6,323,111	-		PFLU_RS28405	0.75	+0.5
6,323,111	-		PFLU_RS28405	0.75	+1.7
6,323,111	-		PFLU_RS28405	0.75	-1.4
6,323,111	-		PFLU_RS28405	0.75	+1.1
6,323,111	-		PFLU_RS28405	0.75	-0.4
6,323,111	-		PFLU_RS28405	0.75	-1.1
6,323,111	-		PFLU_RS28405	0.75	-2.6
6,323,111	-		PFLU_RS28405	0.75	+2.2
6,323,111	-		PFLU_RS28405	0.75	+2.5
6,323,111	-		PFLU_RS28405	0.75	+0.5
6,323,111	-		PFLU_RS28405	0.75	-0.7
6,323,111	-		PFLU_RS28405	0.75	+0.1
6,323,111	-		PFLU_RS28405	0.75	-1.0
6,323,114	+		PFLU_RS28405	0.75	-1.7
6,323,114	+		PFLU_RS28405	0.75	-1.2
6,323,114	+		PFLU_RS28405	0.75	-2.0
6,323,114	+		PFLU_RS28405	0.75	-1.3
6,323,114	+		PFLU_RS28405	0.75	-0.7
6,323,114	+		PFLU_RS28405	0.75	+4.2
6,323,114	+		PFLU_RS28405	0.75	-1.5
6,323,114	+		PFLU_RS28405	0.75	-1.5
6,323,115	-		PFLU_RS28405	0.75	-2.1
6,323,115	-		PFLU_RS28405	0.75	+1.0
6,323,115	-		PFLU_RS28405	0.75	-0.9
6,323,115	-		PFLU_RS28405	0.75	-1.1
6,323,115	-		PFLU_RS28405	0.75	+0.6
6,323,115	-		PFLU_RS28405	0.75	-1.6
6,323,115	-		PFLU_RS28405	0.75	+0.2
6,323,115	-		PFLU_RS28405	0.75	+1.3
6,323,142	+		PFLU_RS28405	0.77	+1.8
6,323,142	+		PFLU_RS28405	0.77	+2.0
6,323,142	+		PFLU_RS28405	0.77	+2.4
6,323,142	+		PFLU_RS28405	0.77	+0.5
6,323,143	-		PFLU_RS28405	0.77	-0.1
6,323,260	-		PFLU_RS28405	0.87	+0.1
6,323,260	-		PFLU_RS28405	0.87	+1.8
6,323,329	+				-2.2
6,323,329	+				-1.7
6,323,329	+				-0.5
6,323,329	+				+1.9
6,323,329	+				-0.7
6,323,329	+				-1.6
6,323,330	-				-0.7
6,323,330	-				+0.5
6,323,330	-				-1.6
6,323,330	-				+0.1
6,323,421	-				-1.7
6,323,464	-				-1.0
6,323,480	-		PFLU_RS28410	0.15	+0.5
6,323,645	+		PFLU_RS28410	0.66	-1.4
6,323,645	+		PFLU_RS28410	0.66	+2.2
6,323,645	+		PFLU_RS28410	0.66	-0.9
6,323,645	+		PFLU_RS28410	0.66	-2.6
6,323,645	+		PFLU_RS28410	0.66	+1.5
6,323,645	+		PFLU_RS28410	0.66	+0.7
6,323,645	+		PFLU_RS28410	0.66	-1.6
6,323,646	-		PFLU_RS28410	0.66	+0.5
6,323,646	-		PFLU_RS28410	0.66	-1.5
6,323,646	-		PFLU_RS28410	0.66	+0.1
6,323,646	-		PFLU_RS28410	0.66	-1.0
6,323,646	-		PFLU_RS28410	0.66	+2.8
6,323,646	-		PFLU_RS28410	0.66	+0.9
6,323,646	-		PFLU_RS28410	0.66	-0.4
6,323,664	+		PFLU_RS28410	0.72	+1.5
6,323,664	+		PFLU_RS28410	0.72	+1.6
6,323,664	+		PFLU_RS28410	0.72	-0.4
6,323,664	+		PFLU_RS28410	0.72	+2.5
6,323,664	+		PFLU_RS28410	0.72	-0.1
6,323,665	-		PFLU_RS28410	0.72	+0.2
6,323,665	-		PFLU_RS28410	0.72	-0.7
6,323,665	-		PFLU_RS28410	0.72	-0.6
6,323,686	+		PFLU_RS28410	0.78	-2.0
6,323,686	+		PFLU_RS28410	0.78	-1.0
6,323,686	+		PFLU_RS28410	0.78	+0.6
6,323,687	-		PFLU_RS28410	0.79	-1.6
6,323,687	-		PFLU_RS28410	0.79	+0.6
6,323,687	-		PFLU_RS28410	0.79	+0.9
6,323,687	-		PFLU_RS28410	0.79	+2.3
6,323,687	-		PFLU_RS28410	0.79	-1.5
6,323,687	-		PFLU_RS28410	0.79	+0.1
6,323,690	+		PFLU_RS28410	0.80	-1.5
6,323,690	+		PFLU_RS28410	0.80	-1.7
6,323,690	+		PFLU_RS28410	0.80	-0.1
6,323,690	+		PFLU_RS28410	0.80	+1.8
6,323,690	+		PFLU_RS28410	0.80	+0.5
6,323,690	+		PFLU_RS28410	0.80	-1.1
6,323,690	+		PFLU_RS28410	0.80	+0.7
6,323,690	+		PFLU_RS28410	0.80	+1.5
6,323,690	+		PFLU_RS28410	0.80	-2.3
6,323,690	+		PFLU_RS28410	0.80	+0.7
6,323,690	+		PFLU_RS28410	0.80	+1.2
6,323,690	+		PFLU_RS28410	0.80	-1.9
6,323,691	-		PFLU_RS28410	0.80	+2.5
6,323,691	-		PFLU_RS28410	0.80	+3.9
6,323,691	-		PFLU_RS28410	0.80	+2.5
6,323,691	-		PFLU_RS28410	0.80	-1.4
6,323,691	-		PFLU_RS28410	0.80	-0.4
6,323,691	-		PFLU_RS28410	0.80	-0.6
6,323,718	+		PFLU_RS28410	0.88	+0.9
6,323,719	-		PFLU_RS28410	0.89	-1.5
6,323,719	-		PFLU_RS28410	0.89	-2.1
6,323,736	+				+2.0
6,323,736	+				-1.5
6,323,737	-				-0.3
6,323,775	-				+1.9
6,323,888	+				+1.5
6,323,888	+				-1.9
6,323,888	+				+3.1
6,323,888	+				-0.5
6,323,888	+				-1.0
6,323,888	+				-0.1
6,323,888	+				-2.4
6,323,888	+				+0.9
6,323,888	+				-0.1
6,323,888	+				+4.0
6,323,888	+				+1.3
6,323,888	+				-1.4
6,323,888	+				+0.2
6,323,889	-				+0.8
6,323,889	-				+0.7
6,323,889	-				-1.5
6,323,889	-				+1.5
6,323,889	-				+2.1
6,323,889	-				+1.0
6,323,899	+				-1.4
6,323,899	+				-0.7
6,323,899	+				-1.6
6,323,900	-				+1.0
6,323,900	-				-1.2
6,323,900	-				-0.8
6,323,900	-				+1.4
6,324,058	+		PFLU_RS28415	0.22	-0.9
6,324,058	+		PFLU_RS28415	0.22	-2.3
6,324,058	+		PFLU_RS28415	0.22	-1.5
6,324,058	+		PFLU_RS28415	0.22	+1.1
6,324,058	+		PFLU_RS28415	0.22	-1.1
6,324,058	+		PFLU_RS28415	0.22	-0.4
6,324,058	+		PFLU_RS28415	0.22	+1.5
6,324,058	+		PFLU_RS28415	0.22	-0.7
6,324,058	+		PFLU_RS28415	0.22	-1.7
6,324,058	+		PFLU_RS28415	0.22	+1.5
6,324,059	-		PFLU_RS28415	0.22	-1.9
6,324,059	-		PFLU_RS28415	0.22	-1.5
6,324,059	-		PFLU_RS28415	0.22	-1.7
6,324,059	-		PFLU_RS28415	0.22	-2.7
6,324,059	-		PFLU_RS28415	0.22	-0.4
6,324,059	-		PFLU_RS28415	0.22	-0.1
6,324,059	-		PFLU_RS28415	0.22	-1.5
6,324,059	-		PFLU_RS28415	0.22	-2.7
6,324,067	+		PFLU_RS28415	0.23	-0.9
6,324,219	-		PFLU_RS28415	0.44	-0.9
6,324,265	+		PFLU_RS28415	0.51	-3.0
6,324,265	+		PFLU_RS28415	0.51	-2.8
6,324,265	+		PFLU_RS28415	0.51	-2.1
6,324,265	+		PFLU_RS28415	0.51	+0.6
6,324,266	-		PFLU_RS28415	0.51	-1.9
6,324,266	-		PFLU_RS28415	0.51	-1.5
6,324,266	-		PFLU_RS28415	0.51	-2.5
6,324,266	-		PFLU_RS28415	0.51	-1.5
6,324,451	+		PFLU_RS28415	0.76	+0.3
6,324,451	+		PFLU_RS28415	0.76	+0.1
6,324,451	+		PFLU_RS28415	0.76	-0.9
6,324,451	+		PFLU_RS28415	0.76	-1.0
6,324,452	-		PFLU_RS28415	0.76	-1.4
6,324,452	-		PFLU_RS28415	0.76	-1.9
6,324,452	-		PFLU_RS28415	0.76	-2.3
6,324,494	+		PFLU_RS28415	0.82	-1.4
6,324,494	+		PFLU_RS28415	0.82	-2.1
6,324,494	+		PFLU_RS28415	0.82	-0.9
6,324,495	-		PFLU_RS28415	0.82	+0.5
6,324,634	+				+0.7
6,324,634	+				-0.5
6,324,634	+				-1.5
6,324,634	+				+2.1
6,324,634	+				-1.6
6,324,634	+				-1.8
6,324,634	+				-1.0
6,324,634	+				-1.4
6,324,634	+				-2.4
6,324,635	-				+0.3
6,324,635	-				+1.6
6,324,635	-				+0.2
6,324,635	-				+0.8
6,324,635	-				-1.7
6,324,635	-				-0.7
6,324,635	-				-1.5
6,324,635	-				+0.5
6,324,673	+				-2.7
6,324,674	-				-2.1
6,324,703	+				-1.2
6,324,703	+				-2.2