Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20225

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
4,575,416	+				+1.2
4,575,416	+				-1.1
4,575,416	+				+2.2
4,575,418	+				-0.1
4,575,419	-				-1.3
4,575,477	+		PFLU_RS31710	0.14	+0.2
4,575,531	+		PFLU_RS31710	0.32	-0.3
4,575,577	-		PFLU_RS31710	0.47	-0.8
4,575,656	+		PFLU_RS31710	0.73	-0.3
4,575,724	+				-1.1
4,575,791	-				-0.2
4,575,791	-				+2.4
4,575,791	-				+0.1
4,575,791	-				-2.7
4,575,795	-				+1.2
4,575,795	-				-0.7
4,575,795	-				+0.9
4,575,826	-				-1.1
4,575,850	+				-1.7
4,575,850	+				-0.9
4,575,850	+				+3.1
4,575,851	-				+1.2
4,575,903	-				-2.5
4,575,931	+				-2.6
4,575,931	+				-1.8
4,575,941	+				-0.1
4,575,941	+				-1.6
4,575,942	-				+1.8
4,575,942	-				-1.2
4,576,007	-				+0.1
4,576,023	-				-1.2
4,576,023	-				+3.5
4,576,116	+				-0.3
4,576,116	+				-0.3
4,576,126	+				+1.5
4,576,126	+				-1.7
4,576,154	+				-2.8
4,576,154	+				-1.1
4,576,155	-				-0.9
4,576,155	-				-0.6
4,576,155	-				+1.1
4,576,155	-				+3.1
4,576,155	-				+1.7
4,576,155	-				+0.2
4,576,155	-				+0.7
4,576,164	-				+0.7
4,576,171	-				+1.5
4,576,171	-				-0.1
4,576,186	+				-0.3
4,576,186	+				-0.8
4,576,186	+				+0.9
4,576,187	-				+0.7
4,576,187	-				-2.0
4,576,275	+				+2.0
4,576,275	+				-0.8
4,576,275	+				+1.1
4,576,275	+				-1.1
4,576,276	-				-0.3
4,576,276	-				-1.2
4,576,276	-				+1.2
4,576,276	-				+0.7
4,576,276	-				-0.2
4,576,297	+				-1.6
4,576,297	+				+1.9
4,576,298	-				-0.8
4,576,298	-				-0.6
4,576,298	-				+1.4
4,576,298	-				-1.1
4,576,299	+				-2.2
4,576,299	+				-2.2
4,576,299	+				+2.1
4,576,299	+				-1.7
4,576,299	+				-0.3
4,576,299	+				+0.7
4,576,300	-				-0.1
4,576,300	-				-0.3
4,576,300	-				-2.8
4,576,300	-				+2.9
4,576,300	-				+0.7
4,576,300	-				-1.4
4,576,300	-				-1.8
4,576,300	-				+1.0
4,576,300	-				-1.2
4,576,300	-				+3.9
4,576,300	-				+2.0
4,576,300	-				-0.6
4,576,300	-				+0.0
4,576,324	+				-0.1
4,576,324	+				+0.4
4,576,324	+				+1.4
4,576,324	+				-2.3
4,576,324	+				+1.1
4,576,324	+				-0.8
4,576,324	+				-2.1
4,576,324	+				-0.1
4,576,324	+				+5.0
4,576,324	+				+1.3
4,576,324	+				-0.6
4,576,325	-				-2.0
4,576,325	-				-1.8
4,576,325	-				+0.7
4,576,325	-				-0.8
4,576,325	-				-0.6
4,576,325	-				-0.1
4,576,325	-				-0.1
4,576,325	-				+0.1
4,576,325	-				-1.6
4,576,325	-				-1.3
4,576,325	-				-1.8
4,576,325	-				-0.6
4,576,325	-				+1.0
4,576,325	-				+0.7
4,576,325	-				-0.1
4,576,325	-				-1.3
4,576,341	+				+0.9
4,576,357	+				-1.8
4,576,358	-				-0.9
4,576,359	+				+1.9
4,576,359	+				+2.6
4,576,359	+				-1.6
4,576,359	+				-0.8
4,576,359	+				-2.2
4,576,359	+				-2.7
4,576,359	+				-0.6
4,576,359	+				+2.2
4,576,359	+				+0.0
4,576,359	+				+1.9
4,576,359	+				-1.8
4,576,359	+				+2.2
4,576,359	+				+0.7
4,576,359	+				-3.3
4,576,359	+				-1.2
4,576,360	-				-0.3
4,576,360	-				+1.2
4,576,360	-				+0.4
4,576,360	-				-1.3
4,576,360	-				-1.9
4,576,360	-				-0.1
4,576,360	-				-1.8
4,576,360	-				+0.7
4,576,384	+				-0.9
4,576,384	+				-0.8
4,576,384	+				+0.6
4,576,385	-				-0.8
4,576,385	-				-0.1
4,576,385	-				-0.6
4,576,385	-				-1.0
4,576,385	-				-0.1
4,576,385	-				-2.5
4,576,385	-				-1.3
4,576,443	+				+0.0
4,576,443	+				+1.5
4,576,443	+				-1.2
4,576,443	+				-1.9
4,576,443	+				-1.5
4,576,443	+				+0.9
4,576,443	+				+2.5
4,576,443	+				+0.0
4,576,443	+				+1.2
4,576,443	+				-0.8
4,576,444	-				-0.8
4,576,444	-				-1.1
4,576,444	-				+0.8
4,576,444	-				-0.1
4,576,444	-				-0.3
4,576,485	-		PFLU_RS20225	0.13	-1.5
4,576,485	-		PFLU_RS20225	0.13	-0.3
4,576,485	-		PFLU_RS20225	0.13	+0.5
4,576,485	-		PFLU_RS20225	0.13	+1.2
4,576,486	+		PFLU_RS20225	0.13	-0.9
4,576,486	+		PFLU_RS20225	0.13	+1.0
4,576,486	+		PFLU_RS20225	0.13	-1.6
4,576,486	+		PFLU_RS20225	0.13	+2.3
4,576,486	+		PFLU_RS20225	0.13	-0.6
4,576,487	-		PFLU_RS20225	0.13	-1.7
4,576,487	-		PFLU_RS20225	0.13	+2.7
4,576,597	+		PFLU_RS20225	0.34	-0.1
4,576,597	+		PFLU_RS20225	0.34	-0.8
4,576,597	+		PFLU_RS20225	0.34	-1.2
4,576,597	+		PFLU_RS20225	0.34	+1.0
4,576,598	-		PFLU_RS20225	0.34	-0.1
4,576,598	-		PFLU_RS20225	0.34	+4.0
4,576,598	-		PFLU_RS20225	0.34	+0.8
4,576,598	-		PFLU_RS20225	0.34	+3.3
4,576,598	-		PFLU_RS20225	0.34	+0.7
4,576,644	+		PFLU_RS20225	0.43	-1.8
4,576,644	+		PFLU_RS20225	0.43	+0.1
4,576,644	+		PFLU_RS20225	0.43	-0.2
4,576,645	-		PFLU_RS20225	0.43	+0.2
4,576,645	-		PFLU_RS20225	0.43	+0.4
4,576,645	-		PFLU_RS20225	0.43	+1.8
4,576,670	+		PFLU_RS20225	0.48	-2.8
4,576,670	+		PFLU_RS20225	0.48	-0.6
4,576,671	-		PFLU_RS20225	0.48	-1.7
4,576,671	-		PFLU_RS20225	0.48	+4.6
4,576,687	-		PFLU_RS20225	0.51	-2.2
4,576,687	-		PFLU_RS20225	0.51	+0.7
4,576,687	-		PFLU_RS20225	0.51	-0.9
4,576,687	-		PFLU_RS20225	0.51	-2.3
4,576,779	+		PFLU_RS20225	0.68	+3.0
4,576,779	+		PFLU_RS20225	0.68	-0.2
4,576,780	-		PFLU_RS20225	0.68	-1.6
4,576,916	+				+0.9
4,576,916	+				-1.7
4,576,916	+				-0.6
4,576,917	-				+1.5
4,576,917	-				-0.8
4,576,917	-				+1.6
4,576,917	-				-1.8
4,576,917	-				-1.0
4,576,948	+				+0.8
4,576,949	-				+1.7
4,576,997	+				-0.1
4,577,004	+				-0.1
4,577,063	+				-0.8
4,577,064	-				+1.1
4,577,068	-				+2.8
4,577,094	-				+0.7
4,577,173	-				-0.9
4,577,189	+				+2.2
4,577,192	-				+1.3
4,577,195	+				-0.9
4,577,196	-				-1.6
4,577,428	+		PFLU_RS30975	0.20	+1.4
4,577,487	-		PFLU_RS30975	0.23	+1.7
4,577,487	-		PFLU_RS30975	0.23	-0.5
4,577,633	-		PFLU_RS30975	0.30	-0.1
4,577,730	+		PFLU_RS30975	0.36	-1.6
4,577,786	+		PFLU_RS30975	0.38	+2.2
4,577,791	-		PFLU_RS30975	0.39	+2.5
4,577,839	+		PFLU_RS30975	0.41	-2.3
4,577,839	+		PFLU_RS30975	0.41	-1.2
4,577,840	-		PFLU_RS30975	0.41	+0.7
4,577,840	-		PFLU_RS30975	0.41	-0.6
4,577,841	+		PFLU_RS30975	0.41	-0.9
4,577,845	+		PFLU_RS30975	0.42	-0.9
4,577,881	-		PFLU_RS30975	0.43	-1.6
4,577,888	+		PFLU_RS30975	0.44	-0.8
4,577,888	+		PFLU_RS30975	0.44	-1.3
4,577,890	+		PFLU_RS30975	0.44	+1.7
4,577,890	+		PFLU_RS30975	0.44	-0.1
4,577,890	+		PFLU_RS30975	0.44	-0.3
4,577,891	-		PFLU_RS30975	0.44	+1.5
4,577,891	-		PFLU_RS30975	0.44	-1.6
4,577,900	+		PFLU_RS30975	0.44	+2.1
4,577,900	+		PFLU_RS30975	0.44	-0.2
4,577,900	+		PFLU_RS30975	0.44	+0.2
4,577,901	-		PFLU_RS30975	0.44	-1.2
4,577,901	-		PFLU_RS30975	0.44	-0.3
4,577,901	-		PFLU_RS30975	0.44	+0.7
4,577,903	+		PFLU_RS30975	0.45	+0.2
4,577,904	-		PFLU_RS30975	0.45	-1.8
4,577,904	-		PFLU_RS30975	0.45	-1.3
4,577,909	+		PFLU_RS30975	0.45	-1.2
4,577,909	+		PFLU_RS30975	0.45	-2.5
4,577,910	-		PFLU_RS30975	0.45	+3.6
4,577,913	+		PFLU_RS30975	0.45	-0.1
4,577,913	+		PFLU_RS30975	0.45	-0.8
4,577,914	-		PFLU_RS30975	0.45	+3.1
4,577,945	-		PFLU_RS30975	0.47	+1.2
4,577,945	-		PFLU_RS30975	0.47	+0.7
4,577,948	+		PFLU_RS30975	0.47	-1.6
4,577,948	+		PFLU_RS30975	0.47	-0.9