Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14920

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
3,336,312	+				-2.7
3,336,312	+				-0.5
3,336,335	+				+1.5
3,336,353	+				+0.1
3,336,354	-				-1.7
3,336,354	-				-0.7
3,336,396	+		PFLU_RS31635	0.12	+0.4
3,336,397	-		PFLU_RS31635	0.13	-1.2
3,336,397	-		PFLU_RS31635	0.13	+1.6
3,336,448	+		PFLU_RS31635	0.46	+0.5
3,336,449	-		PFLU_RS31635	0.46	-0.9
3,336,501	+		PFLU_RS31635	0.79	+1.1
3,336,502	-		PFLU_RS31635	0.80	+0.1
3,336,502	-		PFLU_RS31635	0.80	+4.4
3,336,619	+				-0.5
3,336,620	-				+0.1
3,336,620	-				+3.7
3,336,620	-				+0.5
3,336,620	-				+0.5
3,336,626	+				+2.1
3,336,626	+				-0.9
3,336,626	+				-1.7
3,336,626	+				+0.4
3,336,626	+				-1.2
3,336,627	-				-0.7
3,336,627	-				+2.5
3,336,627	-				+0.5
3,336,627	-				-0.6
3,336,627	-				+3.7
3,336,627	-				+0.5
3,336,768	+		PFLU_RS30835	0.51	+0.8
3,336,768	+		PFLU_RS30835	0.51	-0.5
3,336,768	+		PFLU_RS30835	0.51	+1.1
3,336,768	+		PFLU_RS30835	0.51	+0.5
3,336,768	+		PFLU_RS30835	0.51	+2.1
3,336,768	+		PFLU_RS30835	0.51	+0.1
3,336,768	+		PFLU_RS30835	0.51	-1.2
3,336,768	+		PFLU_RS30835	0.51	-0.7
3,336,769	-		PFLU_RS30835	0.51	-1.0
3,336,769	-		PFLU_RS30835	0.51	-1.5
3,336,769	-		PFLU_RS30835	0.51	-0.9
3,336,769	-		PFLU_RS30835	0.51	-0.5
3,336,769	-		PFLU_RS30835	0.51	-1.0
3,336,769	-		PFLU_RS30835	0.51	+0.5
3,336,769	-		PFLU_RS30835	0.51	+0.1
3,336,772	+		PFLU_RS30835	0.52	+0.1
3,336,773	-		PFLU_RS30835	0.52	-0.3
3,336,773	-		PFLU_RS30835	0.52	-1.6
3,336,787	-		PFLU_RS30835	0.57	+0.1
3,336,787	-		PFLU_RS30835	0.57	-0.9
3,336,787	-		PFLU_RS30835	0.57	+1.5
3,336,787	-		PFLU_RS30835	0.57	-0.9
3,336,835	-		PFLU_RS30835	0.74	-0.7
3,336,848	+		PFLU_RS30835	0.79	+2.6
3,336,848	+		PFLU_RS30835	0.79	+0.8
3,336,848	+		PFLU_RS30835	0.79	-0.0
3,336,848	+		PFLU_RS30835	0.79	-2.1
3,336,848	+		PFLU_RS30835	0.79	-0.5
3,336,848	+		PFLU_RS30835	0.79	-1.7
3,336,848	+		PFLU_RS30835	0.79	+1.6
3,336,848	+		PFLU_RS30835	0.79	-1.2
3,336,849	-		PFLU_RS30835	0.79	-0.9
3,336,866	+		PFLU_RS30835	0.85	+0.5
3,336,877	+		PFLU_RS30835	0.89	-0.2
3,336,926	+				+1.0
3,336,964	-				+4.3
3,336,964	-				+0.5
3,336,999	+				+0.7
3,336,999	+				+1.1
3,337,004	-				-1.6
3,337,004	-				+4.3
3,337,004	-				+0.1
3,337,004	-				+0.5
3,337,007	+				-0.7
3,337,007	+				-0.2
3,337,007	+				-0.1
3,337,007	+				+0.1
3,337,007	+				-2.0
3,337,007	+				-0.5
3,337,008	-				+1.1
3,337,008	-				+1.7
3,337,008	-				+1.8
3,337,008	-				-1.2
3,337,008	-				-2.0
3,337,008	-				+0.1
3,337,064	-				+0.1
3,337,183	+				+0.1
3,337,184	-				+1.1
3,337,184	-				+2.4
3,337,184	-				+0.5
3,337,184	-				+0.9
3,337,184	-				+1.1
3,337,186	-				-0.5
3,337,203	+				+0.5
3,337,204	-				+0.5
3,337,204	-				-0.9
3,337,204	-				-0.5
3,337,204	-				-0.7
3,337,204	-				-1.7
3,337,218	+				-1.3
3,337,232	+				+4.3
3,337,232	+				+0.5
3,337,241	+				+0.5
3,337,242	-				+2.8
3,337,242	-				+1.6
3,337,278	-				-0.4
3,337,346	-				+0.1
3,337,421	+				-0.0
3,337,421	+				-0.5
3,337,421	+				-0.7
3,337,421	+				+0.1
3,337,422	-				+0.1
3,337,498	+		PFLU_RS14920	0.12	-1.0
3,337,498	+		PFLU_RS14920	0.12	+0.1
3,337,814	-		PFLU_RS14920	0.31	+1.9
3,337,820	+		PFLU_RS14920	0.31	-0.9
3,337,820	+		PFLU_RS14920	0.31	+1.1
3,337,820	+		PFLU_RS14920	0.31	-0.9
3,337,820	+		PFLU_RS14920	0.31	-0.9
3,337,821	-		PFLU_RS14920	0.31	+1.1
3,337,821	-		PFLU_RS14920	0.31	+2.4
3,337,821	-		PFLU_RS14920	0.31	+0.1
3,337,821	-		PFLU_RS14920	0.31	+0.5
3,337,821	-		PFLU_RS14920	0.31	+3.6
3,337,821	-		PFLU_RS14920	0.31	+1.9
3,337,821	-		PFLU_RS14920	0.31	+1.3
3,337,821	-		PFLU_RS14920	0.31	+1.4
3,337,821	-		PFLU_RS14920	0.31	-0.7
3,337,821	-		PFLU_RS14920	0.31	+2.7
3,337,821	-		PFLU_RS14920	0.31	+1.1
3,337,821	-		PFLU_RS14920	0.31	-0.6
3,337,821	-		PFLU_RS14920	0.31	-0.2
3,337,821	-		PFLU_RS14920	0.31	-0.1
3,337,821	-		PFLU_RS14920	0.31	+0.5
3,337,821	-		PFLU_RS14920	0.31	+2.1
3,337,821	-		PFLU_RS14920	0.31	+1.1
3,337,850	-		PFLU_RS14920	0.33	+2.7
3,337,892	-		PFLU_RS14920	0.35	-0.9
3,337,892	-		PFLU_RS14920	0.35	+2.5
3,338,285	+		PFLU_RS14920	0.59	+0.1
3,338,286	-		PFLU_RS14920	0.59	+0.5
3,338,286	-		PFLU_RS14920	0.59	-0.2
3,338,333	+		PFLU_RS14920	0.62	-1.9
3,338,333	+		PFLU_RS14920	0.62	+0.5
3,338,333	+		PFLU_RS14920	0.62	+1.1
3,338,333	+		PFLU_RS14920	0.62	+0.5
3,338,387	+		PFLU_RS14920	0.65	-0.7
3,338,388	-		PFLU_RS14920	0.65	-1.2
3,338,388	-		PFLU_RS14920	0.65	-1.0
3,338,450	+		PFLU_RS14920	0.69	-1.9
3,338,451	-		PFLU_RS14920	0.69	-0.9
3,338,451	-		PFLU_RS14920	0.69	+1.0
3,338,451	-		PFLU_RS14920	0.69	+1.9
3,338,481	+		PFLU_RS14920	0.71	-1.0
3,338,482	-		PFLU_RS14920	0.71	-0.5
3,338,482	-		PFLU_RS14920	0.71	-0.9
3,338,529	+		PFLU_RS14920	0.74	+0.5
3,338,530	-		PFLU_RS14920	0.74	-1.7
3,338,530	-		PFLU_RS14920	0.74	+1.3
3,338,534	-		PFLU_RS14920	0.74	+1.1
3,338,583	+		PFLU_RS14920	0.77	-2.0
3,338,583	+		PFLU_RS14920	0.77	+1.7
3,338,614	+		PFLU_RS14920	0.79	+1.1
3,338,614	+		PFLU_RS14920	0.79	+0.8
3,338,657	+		PFLU_RS14920	0.81	-0.7
3,338,680	+		PFLU_RS14920	0.83	+1.8
3,338,680	+		PFLU_RS14920	0.83	+0.7
3,338,686	-		PFLU_RS14920	0.83	-1.3
3,338,686	-		PFLU_RS14920	0.83	-0.2
3,338,700	+		PFLU_RS14920	0.84	+0.1
3,338,701	-		PFLU_RS14920	0.84	+1.2
3,338,701	-		PFLU_RS14920	0.84	+1.1
3,338,701	-		PFLU_RS14920	0.84	-1.0
3,338,701	-		PFLU_RS14920	0.84	+0.5
3,338,701	-		PFLU_RS14920	0.84	-1.5
3,338,746	+		PFLU_RS14920	0.86	+0.1
3,338,747	-		PFLU_RS14920	0.87	-0.7
3,338,747	-		PFLU_RS14920	0.87	+0.5
3,338,769	+		PFLU_RS14920	0.88	-0.2
3,338,769	+		PFLU_RS14920	0.88	-1.0
3,338,781	-		PFLU_RS14920	0.89	+2.4
3,338,781	-		PFLU_RS14920	0.89	-0.2
3,338,882	+				+1.1
3,338,882	+				-1.0
3,338,883	-				-0.5
3,338,883	-				+0.5
3,338,921	+				-0.2
3,338,921	+				+2.1
3,338,922	-				-1.0
3,338,922	-				+3.0
3,338,922	-				-1.2
3,338,922	-				+2.1
3,338,936	+				-0.0
3,338,951	+				+2.1
3,338,952	-				-1.0
3,338,998	-				+1.1
3,339,070	+				+0.8
3,339,070	+				+1.5
3,339,071	-				+0.4
3,339,079	+				-0.7
3,339,079	+				-2.0
3,339,079	+				+0.6
3,339,079	+				-0.4
3,339,080	-				-1.0
3,339,080	-				-0.7
3,339,080	-				+2.5
3,339,080	-				-0.7
3,339,089	+				+0.1
3,339,090	-				+1.1
3,339,090	-				+0.6
3,339,093	-				-1.0
3,339,093	-				-0.4
3,339,109	+				-0.2
3,339,127	+				+0.1
3,339,128	-				-1.7
3,339,128	-				-0.9
3,339,128	-				-0.5
3,339,128	-				+3.5
3,339,132	-				+0.6
3,339,132	-				-0.7
3,339,178	+		PFLU_RS14925	0.10	+1.0
3,339,179	-		PFLU_RS14925	0.10	-0.2
3,339,179	-		PFLU_RS14925	0.10	+3.1
3,339,227	+		PFLU_RS14925	0.14	-1.6
3,339,227	+		PFLU_RS14925	0.14	+1.7
3,339,227	+		PFLU_RS14925	0.14	+0.7
3,339,296	-		PFLU_RS14925	0.20	-0.4
3,339,301	+		PFLU_RS14925	0.20	+0.0
3,339,301	+		PFLU_RS14925	0.20	-1.3
3,339,301	+		PFLU_RS14925	0.20	-1.9
3,339,305	+		PFLU_RS14925	0.20	-1.3
3,339,305	+		PFLU_RS14925	0.20	+0.1
3,339,306	-		PFLU_RS14925	0.20	-0.9
3,339,306	-		PFLU_RS14925	0.20	+1.9
3,339,341	+		PFLU_RS14925	0.23	-0.9
3,339,345	+		PFLU_RS14925	0.23	+1.1
3,339,367	+		PFLU_RS14925	0.25	+3.1
3,339,367	+		PFLU_RS14925	0.25	-0.2
3,339,368	-		PFLU_RS14925	0.25	-0.4
3,339,368	-		PFLU_RS14925	0.25	+2.1
3,339,368	-		PFLU_RS14925	0.25	+3.5
3,339,383	+		PFLU_RS14925	0.26	+1.1
3,339,483	-		PFLU_RS14925	0.34	-1.3
3,339,499	+		PFLU_RS14925	0.36	+0.6
3,339,499	+		PFLU_RS14925	0.36	+0.6
3,339,499	+		PFLU_RS14925	0.36	+2.1
3,339,500	-		PFLU_RS14925	0.36	-1.9
3,339,534	+		PFLU_RS14925	0.39	-0.2
3,339,568	-		PFLU_RS14925	0.41	+1.4
3,339,568	-		PFLU_RS14925	0.41	+0.7
3,339,582	-		PFLU_RS14925	0.42	+2.1
3,339,582	-		PFLU_RS14925	0.42	-1.0
3,339,628	+		PFLU_RS14925	0.46	+0.1
3,339,659	-		PFLU_RS14925	0.48	-1.2
3,339,659	-		PFLU_RS14925	0.48	+1.4
3,339,673	+		PFLU_RS14925	0.50	+1.1
3,339,673	+		PFLU_RS14925	0.50	-0.7
3,339,673	+		PFLU_RS14925	0.50	-1.0
3,339,692	+		PFLU_RS14925	0.51	+2.1
3,339,692	+		PFLU_RS14925	0.51	+0.1
3,339,693	-		PFLU_RS14925	0.51	+0.1
3,339,764	-		PFLU_RS14925	0.57	+1.9
3,339,820	+		PFLU_RS14925	0.61	-0.9
3,339,820	+		PFLU_RS14925	0.61	+1.1
3,339,820	+		PFLU_RS14925	0.61	+1.3
3,339,820	+		PFLU_RS14925	0.61	-0.4
3,339,820	+		PFLU_RS14925	0.61	+0.6
3,339,821	-		PFLU_RS14925	0.61	+2.1
3,339,834	+		PFLU_RS14925	0.62	-1.2
3,339,850	+		PFLU_RS14925	0.64	+1.9
3,339,850	+		PFLU_RS14925	0.64	+1.1
3,339,851	-		PFLU_RS14925	0.64	-1.0
3,339,851	-		PFLU_RS14925	0.64	-0.2
3,339,886	+		PFLU_RS14925	0.67	-1.0
3,339,887	-		PFLU_RS14925	0.67	+0.6
3,339,887	-		PFLU_RS14925	0.67	-1.9
3,339,932	+		PFLU_RS14925	0.70	+0.8
3,339,933	-		PFLU_RS14925	0.70	+0.6
3,339,933	-		PFLU_RS14925	0.70	-0.4