Experiment: chicken 21; day 7; diet=StandardDiet; sample=Cecum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13700 and BBR_RS13705 are separated by 68 nucleotides BBR_RS13705 and BBR_RS13710 are separated by 126 nucleotides BBR_RS13710 and BBR_RS13715 are separated by 56 nucleotides BBR_RS13715 and BBR_RS13720 are separated by 105 nucleotides
BBR_RS13700: BBR_RS13700 - diaminopimelate epimerase, at 847,111 to 848,010
_RS13700
BBR_RS13705: BBR_RS13705 - Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain, at 848,079 to 848,798
_RS13705
BBR_RS13710: BBR_RS13710 - PHP domain-containing protein, at 848,925 to 849,818
_RS13710
BBR_RS13715: BBR_RS13715 - DUF3107 domain-containing protein, at 849,875 to 850,099
_RS13715
BBR_RS13720: BBR_RS13720 - hypothetical protein, at 850,205 to 851,836
_RS13720
Position (kb) 848
849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 847.925 kb on + strand at 847.952 kb on + strand at 847.953 kb on + strand at 847.974 kb on - strand at 847.993 kb on + strand at 848.003 kb on + strand at 848.006 kb on - strand at 848.020 kb on + strand at 848.101 kb on - strand at 848.103 kb on - strand at 848.145 kb on - strand at 848.291 kb on - strand, within BBR_RS13705 at 848.291 kb on - strand, within BBR_RS13705 at 848.291 kb on - strand, within BBR_RS13705 at 848.305 kb on + strand, within BBR_RS13705 at 848.305 kb on + strand, within BBR_RS13705 at 848.321 kb on - strand, within BBR_RS13705 at 848.350 kb on + strand, within BBR_RS13705 at 848.368 kb on - strand, within BBR_RS13705 at 848.387 kb on - strand, within BBR_RS13705 at 848.388 kb on + strand, within BBR_RS13705 at 848.391 kb on - strand, within BBR_RS13705 at 848.396 kb on - strand, within BBR_RS13705 at 848.481 kb on - strand, within BBR_RS13705 at 848.505 kb on - strand, within BBR_RS13705 at 848.610 kb on + strand, within BBR_RS13705 at 848.618 kb on - strand, within BBR_RS13705 at 848.694 kb on + strand, within BBR_RS13705 at 848.707 kb on - strand, within BBR_RS13705 at 848.721 kb on + strand, within BBR_RS13705 at 848.728 kb on - strand at 848.819 kb on - strand at 848.927 kb on + strand at 848.938 kb on - strand at 848.940 kb on + strand at 848.940 kb on - strand at 848.940 kb on - strand at 848.953 kb on + strand at 848.953 kb on + strand at 848.963 kb on + strand at 848.971 kb on - strand at 848.971 kb on - strand at 849.041 kb on + strand, within BBR_RS13710 at 849.041 kb on + strand, within BBR_RS13710 at 849.041 kb on + strand, within BBR_RS13710 at 849.041 kb on + strand, within BBR_RS13710 at 849.049 kb on - strand, within BBR_RS13710 at 849.049 kb on - strand, within BBR_RS13710 at 849.049 kb on - strand, within BBR_RS13710 at 849.064 kb on - strand, within BBR_RS13710 at 849.064 kb on - strand, within BBR_RS13710 at 849.064 kb on - strand, within BBR_RS13710 at 849.095 kb on + strand, within BBR_RS13710 at 849.101 kb on + strand, within BBR_RS13710 at 849.101 kb on + strand, within BBR_RS13710 at 849.169 kb on + strand, within BBR_RS13710 at 849.172 kb on + strand, within BBR_RS13710 at 849.199 kb on + strand, within BBR_RS13710 at 849.271 kb on - strand, within BBR_RS13710 at 849.305 kb on + strand, within BBR_RS13710 at 849.305 kb on + strand, within BBR_RS13710 at 849.338 kb on + strand, within BBR_RS13710 at 849.338 kb on + strand, within BBR_RS13710 at 849.346 kb on - strand, within BBR_RS13710 at 849.346 kb on - strand, within BBR_RS13710 at 849.346 kb on - strand, within BBR_RS13710 at 849.358 kb on + strand, within BBR_RS13710 at 849.358 kb on + strand, within BBR_RS13710 at 849.367 kb on - strand, within BBR_RS13710 at 849.369 kb on - strand, within BBR_RS13710 at 849.369 kb on - strand, within BBR_RS13710 at 849.370 kb on - strand, within BBR_RS13710 at 849.476 kb on + strand, within BBR_RS13710 at 849.476 kb on + strand, within BBR_RS13710 at 849.531 kb on - strand, within BBR_RS13710 at 849.549 kb on + strand, within BBR_RS13710 at 849.617 kb on - strand, within BBR_RS13710 at 849.619 kb on + strand, within BBR_RS13710 at 849.627 kb on + strand, within BBR_RS13710 at 849.646 kb on + strand, within BBR_RS13710 at 849.654 kb on - strand, within BBR_RS13710 at 849.664 kb on - strand, within BBR_RS13710 at 849.682 kb on + strand, within BBR_RS13710 at 849.717 kb on - strand, within BBR_RS13710 at 849.718 kb on + strand, within BBR_RS13710 at 849.726 kb on - strand, within BBR_RS13710 at 849.812 kb on - strand at 849.818 kb on + strand at 849.819 kb on + strand at 849.848 kb on + strand at 849.856 kb on - strand at 849.863 kb on - strand at 849.872 kb on + strand at 849.872 kb on + strand at 849.874 kb on + strand at 849.882 kb on - strand at 849.929 kb on + strand, within BBR_RS13715 at 849.937 kb on - strand, within BBR_RS13715 at 849.944 kb on - strand, within BBR_RS13715 at 849.999 kb on + strand, within BBR_RS13715 at 850.006 kb on - strand, within BBR_RS13715 at 850.055 kb on - strand, within BBR_RS13715 at 850.105 kb on - strand at 850.115 kb on - strand at 850.117 kb on - strand at 850.174 kb on - strand at 850.253 kb on - strand at 850.258 kb on - strand at 850.277 kb on - strand at 850.277 kb on - strand at 850.277 kb on - strand at 850.300 kb on - strand at 850.300 kb on - strand at 850.316 kb on - strand at 850.362 kb on + strand at 850.401 kb on + strand, within BBR_RS13720 at 850.401 kb on + strand, within BBR_RS13720 at 850.401 kb on + strand, within BBR_RS13720 at 850.409 kb on - strand, within BBR_RS13720 at 850.409 kb on - strand, within BBR_RS13720 at 850.495 kb on - strand, within BBR_RS13720 at 850.540 kb on + strand, within BBR_RS13720 at 850.545 kb on + strand, within BBR_RS13720 at 850.553 kb on - strand, within BBR_RS13720 at 850.553 kb on - strand, within BBR_RS13720 at 850.602 kb on + strand, within BBR_RS13720 at 850.602 kb on + strand, within BBR_RS13720 at 850.604 kb on - strand, within BBR_RS13720 at 850.604 kb on - strand, within BBR_RS13720 at 850.681 kb on + strand, within BBR_RS13720 at 850.689 kb on - strand, within BBR_RS13720 at 850.689 kb on - strand, within BBR_RS13720 at 850.701 kb on - strand, within BBR_RS13720 at 850.701 kb on - strand, within BBR_RS13720 at 850.724 kb on - strand, within BBR_RS13720 at 850.806 kb on + strand, within BBR_RS13720 at 850.806 kb on + strand, within BBR_RS13720
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 21; day 7; diet=StandardDiet; sample=Cecum remove 847,925 + -2.1 847,952 + -1.6 847,953 + -2.9 847,974 - -1.5 847,993 + +0.2 848,003 + +1.3 848,006 - -0.9 848,020 + +0.5 848,101 - -2.2 848,103 - -2.3 848,145 - -0.9 848,291 - BBR_RS13705 0.29 -0.5 848,291 - BBR_RS13705 0.29 -1.0 848,291 - BBR_RS13705 0.29 -1.0 848,305 + BBR_RS13705 0.31 -2.7 848,305 + BBR_RS13705 0.31 -1.9 848,321 - BBR_RS13705 0.34 -2.3 848,350 + BBR_RS13705 0.38 -2.7 848,368 - BBR_RS13705 0.40 -1.2 848,387 - BBR_RS13705 0.43 -1.1 848,388 + BBR_RS13705 0.43 -2.1 848,391 - BBR_RS13705 0.43 -1.1 848,396 - BBR_RS13705 0.44 -0.4 848,481 - BBR_RS13705 0.56 -1.9 848,505 - BBR_RS13705 0.59 -2.3 848,610 + BBR_RS13705 0.74 -2.8 848,618 - BBR_RS13705 0.75 -1.3 848,694 + BBR_RS13705 0.85 -0.1 848,707 - BBR_RS13705 0.87 -2.0 848,721 + BBR_RS13705 0.89 -1.5 848,728 - -0.5 848,819 - -2.9 848,927 + +3.5 848,938 - +0.1 848,940 + +1.8 848,940 - +1.1 848,940 - -1.8 848,953 + +2.9 848,953 + +1.5 848,963 + +1.1 848,971 - +0.6 848,971 - -2.4 849,041 + BBR_RS13710 0.13 +0.8 849,041 + BBR_RS13710 0.13 +0.1 849,041 + BBR_RS13710 0.13 +2.9 849,041 + BBR_RS13710 0.13 -0.5 849,049 - BBR_RS13710 0.14 +0.9 849,049 - BBR_RS13710 0.14 -1.2 849,049 - BBR_RS13710 0.14 +1.3 849,064 - BBR_RS13710 0.16 +1.8 849,064 - BBR_RS13710 0.16 -2.1 849,064 - BBR_RS13710 0.16 +4.4 849,095 + BBR_RS13710 0.19 +1.1 849,101 + BBR_RS13710 0.20 +2.8 849,101 + BBR_RS13710 0.20 +3.5 849,169 + BBR_RS13710 0.27 +0.9 849,172 + BBR_RS13710 0.28 -0.2 849,199 + BBR_RS13710 0.31 +0.4 849,271 - BBR_RS13710 0.39 -1.6 849,305 + BBR_RS13710 0.43 +3.0 849,305 + BBR_RS13710 0.43 -0.3 849,338 + BBR_RS13710 0.46 -0.2 849,338 + BBR_RS13710 0.46 +0.4 849,346 - BBR_RS13710 0.47 -0.7 849,346 - BBR_RS13710 0.47 -1.7 849,346 - BBR_RS13710 0.47 +0.6 849,358 + BBR_RS13710 0.48 +1.8 849,358 + BBR_RS13710 0.48 -0.3 849,367 - BBR_RS13710 0.49 +2.0 849,369 - BBR_RS13710 0.50 +2.2 849,369 - BBR_RS13710 0.50 +2.1 849,370 - BBR_RS13710 0.50 +0.4 849,476 + BBR_RS13710 0.62 +1.4 849,476 + BBR_RS13710 0.62 +0.4 849,531 - BBR_RS13710 0.68 +0.8 849,549 + BBR_RS13710 0.70 +2.1 849,617 - BBR_RS13710 0.77 -2.0 849,619 + BBR_RS13710 0.78 +0.5 849,627 + BBR_RS13710 0.79 +0.1 849,646 + BBR_RS13710 0.81 +2.3 849,654 - BBR_RS13710 0.82 -1.4 849,664 - BBR_RS13710 0.83 +1.1 849,682 + BBR_RS13710 0.85 -0.1 849,717 - BBR_RS13710 0.89 +2.0 849,718 + BBR_RS13710 0.89 -2.1 849,726 - BBR_RS13710 0.90 -0.9 849,812 - +1.2 849,818 + +1.0 849,819 + -0.6 849,848 + -1.5 849,856 - -0.0 849,863 - -0.8 849,872 + -1.6 849,872 + +2.9 849,874 + +1.5 849,882 - +1.9 849,929 + BBR_RS13715 0.24 +2.4 849,937 - BBR_RS13715 0.28 -0.3 849,944 - BBR_RS13715 0.31 +1.7 849,999 + BBR_RS13715 0.55 +5.6 850,006 - BBR_RS13715 0.58 +1.7 850,055 - BBR_RS13715 0.80 +2.7 850,105 - +2.0 850,115 - +0.6 850,117 - +0.7 850,174 - +0.6 850,253 - -0.7 850,258 - -2.3 850,277 - -0.5 850,277 - +0.0 850,277 - -1.3 850,300 - -2.2 850,300 - -1.4 850,316 - -1.0 850,362 + -1.5 850,401 + BBR_RS13720 0.12 -0.7 850,401 + BBR_RS13720 0.12 -1.9 850,401 + BBR_RS13720 0.12 -1.7 850,409 - BBR_RS13720 0.12 -1.9 850,409 - BBR_RS13720 0.12 -2.6 850,495 - BBR_RS13720 0.18 -2.3 850,540 + BBR_RS13720 0.21 -1.2 850,545 + BBR_RS13720 0.21 +2.4 850,553 - BBR_RS13720 0.21 -1.0 850,553 - BBR_RS13720 0.21 -2.0 850,602 + BBR_RS13720 0.24 -3.6 850,602 + BBR_RS13720 0.24 -1.6 850,604 - BBR_RS13720 0.24 -2.7 850,604 - BBR_RS13720 0.24 -0.8 850,681 + BBR_RS13720 0.29 -1.9 850,689 - BBR_RS13720 0.30 -3.2 850,689 - BBR_RS13720 0.30 -3.3 850,701 - BBR_RS13720 0.30 -2.2 850,701 - BBR_RS13720 0.30 -2.0 850,724 - BBR_RS13720 0.32 -2.3 850,806 + BBR_RS13720 0.37 -1.0 850,806 + BBR_RS13720 0.37 -2.4
Or see this region's nucleotide sequence