Experiment: chicken 21; day 7; diet=StandardDiet; sample=Cecum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13035 and BBR_RS13040 are separated by 78 nucleotides BBR_RS13040 and BBR_RS13045 are separated by 113 nucleotides BBR_RS13045 and BBR_RS13050 are separated by 121 nucleotides
BBR_RS13035: BBR_RS13035 - ABC transporter permease, at 697,844 to 698,767
_RS13035
BBR_RS13040: BBR_RS13040 - CHAP domain-containing protein, at 698,846 to 700,192
_RS13040
BBR_RS13045: BBR_RS13045 - SsrA-binding protein, at 700,306 to 700,782
_RS13045
BBR_RS13050: BBR_RS13050 - ABC transporter substrate-binding protein, at 700,904 to 701,857
_RS13050
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 697.895 kb on - strand at 697.906 kb on + strand at 697.911 kb on + strand at 698.029 kb on - strand, within BBR_RS13035 at 698.048 kb on - strand, within BBR_RS13035 at 698.221 kb on - strand, within BBR_RS13035 at 698.318 kb on - strand, within BBR_RS13035 at 698.420 kb on - strand, within BBR_RS13035 at 698.779 kb on - strand at 698.781 kb on + strand at 698.810 kb on + strand at 698.876 kb on - strand at 699.154 kb on + strand, within BBR_RS13040 at 699.290 kb on + strand, within BBR_RS13040 at 699.429 kb on - strand, within BBR_RS13040 at 699.481 kb on + strand, within BBR_RS13040 at 699.671 kb on + strand, within BBR_RS13040 at 699.773 kb on - strand, within BBR_RS13040 at 699.833 kb on + strand, within BBR_RS13040 at 699.836 kb on - strand, within BBR_RS13040 at 699.868 kb on + strand, within BBR_RS13040 at 700.022 kb on - strand, within BBR_RS13040 at 700.191 kb on + strand at 700.281 kb on - strand at 700.281 kb on - strand at 700.288 kb on + strand at 700.739 kb on - strand at 700.813 kb on + strand at 700.819 kb on + strand at 700.837 kb on + strand at 700.853 kb on - strand at 700.943 kb on + strand at 700.951 kb on - strand at 700.951 kb on - strand at 700.951 kb on - strand at 700.961 kb on - strand at 700.961 kb on - strand at 700.994 kb on + strand at 700.995 kb on - strand at 701.016 kb on - strand, within BBR_RS13050 at 701.030 kb on + strand, within BBR_RS13050 at 701.137 kb on - strand, within BBR_RS13050 at 701.163 kb on + strand, within BBR_RS13050
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 21; day 7; diet=StandardDiet; sample=Cecum remove 697,895 - -3.6 697,906 + -3.4 697,911 + -2.6 698,029 - BBR_RS13035 0.20 -2.7 698,048 - BBR_RS13035 0.22 -1.7 698,221 - BBR_RS13035 0.41 -2.5 698,318 - BBR_RS13035 0.51 -3.3 698,420 - BBR_RS13035 0.62 -3.0 698,779 - -0.6 698,781 + +0.2 698,810 + +2.5 698,876 - -1.3 699,154 + BBR_RS13040 0.23 -3.0 699,290 + BBR_RS13040 0.33 -3.8 699,429 - BBR_RS13040 0.43 -4.5 699,481 + BBR_RS13040 0.47 -4.3 699,671 + BBR_RS13040 0.61 -3.2 699,773 - BBR_RS13040 0.69 -2.7 699,833 + BBR_RS13040 0.73 -2.7 699,836 - BBR_RS13040 0.73 -3.1 699,868 + BBR_RS13040 0.76 -0.1 700,022 - BBR_RS13040 0.87 +3.3 700,191 + -0.8 700,281 - +1.7 700,281 - -1.9 700,288 + -1.2 700,739 - -0.9 700,813 + -0.7 700,819 + -0.5 700,837 + +0.5 700,853 - -0.6 700,943 + -0.6 700,951 - +1.7 700,951 - -2.0 700,951 - +0.0 700,961 - -0.5 700,961 - +1.9 700,994 + +1.9 700,995 - -0.1 701,016 - BBR_RS13050 0.12 +1.4 701,030 + BBR_RS13050 0.13 -0.5 701,137 - BBR_RS13050 0.24 +0.5 701,163 + BBR_RS13050 0.27 +0.8
Or see this region's nucleotide sequence