Experiment: chicken 21; day 7; diet=StandardDiet; sample=Cecum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12825 and BBR_RS12830 are separated by 345 nucleotides BBR_RS12830 and BBR_RS12835 are separated by 172 nucleotides BBR_RS12835 and BBR_RS20730 are separated by 13 nucleotides BBR_RS20730 and BBR_RS12840 overlap by 2 nucleotides
BBR_RS12825: BBR_RS12825 - hypothetical protein, at 626,855 to 628,222
_RS12825
BBR_RS12830: BBR_RS12830 - G5 domain-containing protein, at 628,568 to 629,551
_RS12830
BBR_RS12835: BBR_RS12835 - thioredoxin, at 629,724 to 630,095
_RS12835
BBR_RS20730: BBR_RS20730 - Crp/Fnr family transcriptional regulator, at 630,109 to 630,294
_RS20730
BBR_RS12840: BBR_RS12840 - DUF4916 domain-containing protein, at 630,293 to 630,925
_RS12840
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 627.568 kb on + strand, within BBR_RS12825 at 627.568 kb on + strand, within BBR_RS12825 at 627.575 kb on + strand, within BBR_RS12825 at 627.594 kb on - strand, within BBR_RS12825 at 627.594 kb on - strand, within BBR_RS12825 at 627.596 kb on + strand, within BBR_RS12825 at 627.604 kb on + strand, within BBR_RS12825 at 627.612 kb on - strand, within BBR_RS12825 at 627.612 kb on - strand, within BBR_RS12825 at 627.622 kb on + strand, within BBR_RS12825 at 627.635 kb on + strand, within BBR_RS12825 at 627.643 kb on - strand, within BBR_RS12825 at 627.683 kb on + strand, within BBR_RS12825 at 627.691 kb on + strand, within BBR_RS12825 at 627.691 kb on + strand, within BBR_RS12825 at 627.691 kb on + strand, within BBR_RS12825 at 627.691 kb on + strand, within BBR_RS12825 at 627.699 kb on - strand, within BBR_RS12825 at 627.736 kb on + strand, within BBR_RS12825 at 627.746 kb on + strand, within BBR_RS12825 at 627.751 kb on + strand, within BBR_RS12825 at 627.761 kb on + strand, within BBR_RS12825 at 627.761 kb on + strand, within BBR_RS12825 at 627.799 kb on + strand, within BBR_RS12825 at 627.834 kb on - strand, within BBR_RS12825 at 627.835 kb on - strand, within BBR_RS12825 at 627.835 kb on - strand, within BBR_RS12825 at 627.856 kb on + strand, within BBR_RS12825 at 627.856 kb on + strand, within BBR_RS12825 at 627.864 kb on - strand, within BBR_RS12825 at 627.894 kb on - strand, within BBR_RS12825 at 627.952 kb on + strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.960 kb on - strand, within BBR_RS12825 at 627.962 kb on - strand, within BBR_RS12825 at 627.981 kb on - strand, within BBR_RS12825 at 627.985 kb on + strand, within BBR_RS12825 at 627.985 kb on + strand, within BBR_RS12825 at 627.985 kb on + strand, within BBR_RS12825 at 627.985 kb on + strand, within BBR_RS12825 at 627.986 kb on - strand, within BBR_RS12825 at 627.993 kb on - strand, within BBR_RS12825 at 627.993 kb on - strand, within BBR_RS12825 at 627.993 kb on - strand, within BBR_RS12825 at 627.999 kb on - strand, within BBR_RS12825 at 628.037 kb on + strand, within BBR_RS12825 at 628.037 kb on + strand, within BBR_RS12825 at 628.070 kb on - strand, within BBR_RS12825 at 628.124 kb on + strand at 628.131 kb on + strand at 628.234 kb on + strand at 628.234 kb on + strand at 628.261 kb on + strand at 628.269 kb on - strand at 628.291 kb on + strand at 628.313 kb on - strand at 628.372 kb on + strand at 628.390 kb on - strand at 628.392 kb on + strand at 628.392 kb on + strand at 628.403 kb on - strand at 628.410 kb on + strand at 628.488 kb on - strand at 628.488 kb on - strand at 628.509 kb on + strand at 628.516 kb on - strand at 628.542 kb on + strand at 628.542 kb on + strand at 628.687 kb on - strand, within BBR_RS12830 at 628.687 kb on - strand, within BBR_RS12830 at 628.734 kb on - strand, within BBR_RS12830 at 628.735 kb on + strand, within BBR_RS12830 at 628.745 kb on - strand, within BBR_RS12830 at 628.800 kb on + strand, within BBR_RS12830 at 628.813 kb on - strand, within BBR_RS12830 at 628.841 kb on + strand, within BBR_RS12830 at 628.856 kb on - strand, within BBR_RS12830 at 628.943 kb on + strand, within BBR_RS12830 at 629.036 kb on + strand, within BBR_RS12830 at 629.060 kb on + strand, within BBR_RS12830 at 629.075 kb on - strand, within BBR_RS12830 at 629.080 kb on - strand, within BBR_RS12830 at 629.085 kb on - strand, within BBR_RS12830 at 629.085 kb on - strand, within BBR_RS12830 at 629.091 kb on - strand, within BBR_RS12830 at 629.096 kb on - strand, within BBR_RS12830 at 629.104 kb on - strand, within BBR_RS12830 at 629.171 kb on - strand, within BBR_RS12830 at 629.199 kb on - strand, within BBR_RS12830 at 629.317 kb on + strand, within BBR_RS12830 at 629.323 kb on - strand, within BBR_RS12830 at 629.325 kb on - strand, within BBR_RS12830 at 629.335 kb on - strand, within BBR_RS12830 at 629.386 kb on + strand, within BBR_RS12830 at 629.396 kb on + strand, within BBR_RS12830 at 629.404 kb on + strand, within BBR_RS12830 at 629.404 kb on + strand, within BBR_RS12830 at 629.404 kb on + strand, within BBR_RS12830 at 629.412 kb on + strand, within BBR_RS12830 at 629.412 kb on - strand, within BBR_RS12830 at 629.420 kb on - strand, within BBR_RS12830 at 629.443 kb on + strand, within BBR_RS12830 at 629.445 kb on - strand, within BBR_RS12830 at 629.558 kb on + strand at 629.558 kb on + strand at 629.567 kb on + strand at 629.567 kb on + strand at 629.567 kb on + strand at 629.568 kb on + strand at 629.575 kb on - strand at 629.575 kb on - strand at 629.575 kb on - strand at 629.575 kb on - strand at 629.575 kb on - strand at 629.575 kb on - strand at 629.577 kb on + strand at 629.654 kb on + strand at 629.721 kb on + strand at 629.722 kb on + strand at 629.741 kb on - strand at 629.776 kb on + strand, within BBR_RS12835 at 629.776 kb on - strand, within BBR_RS12835 at 629.784 kb on - strand, within BBR_RS12835 at 629.784 kb on - strand, within BBR_RS12835 at 629.784 kb on - strand, within BBR_RS12835 at 629.784 kb on - strand, within BBR_RS12835 at 629.819 kb on - strand, within BBR_RS12835 at 629.839 kb on - strand, within BBR_RS12835 at 629.842 kb on + strand, within BBR_RS12835 at 629.854 kb on - strand, within BBR_RS12835 at 629.863 kb on - strand, within BBR_RS12835 at 629.997 kb on + strand, within BBR_RS12835 at 629.997 kb on + strand, within BBR_RS12835 at 629.997 kb on + strand, within BBR_RS12835 at 630.002 kb on + strand, within BBR_RS12835 at 630.002 kb on + strand, within BBR_RS12835 at 630.002 kb on + strand, within BBR_RS12835 at 630.005 kb on - strand, within BBR_RS12835 at 630.011 kb on + strand, within BBR_RS12835 at 630.024 kb on - strand, within BBR_RS12835 at 630.024 kb on - strand, within BBR_RS12835 at 630.068 kb on + strand at 630.118 kb on + strand at 630.120 kb on + strand at 630.120 kb on + strand at 630.126 kb on - strand at 630.128 kb on - strand, within BBR_RS20730 at 630.130 kb on + strand, within BBR_RS20730 at 630.130 kb on + strand, within BBR_RS20730 at 630.138 kb on - strand, within BBR_RS20730 at 630.141 kb on + strand, within BBR_RS20730 at 630.197 kb on + strand, within BBR_RS20730 at 630.202 kb on + strand, within BBR_RS20730 at 630.210 kb on - strand, within BBR_RS20730 at 630.265 kb on - strand, within BBR_RS20730 at 630.271 kb on - strand, within BBR_RS20730 at 630.284 kb on + strand at 630.294 kb on + strand at 630.323 kb on - strand at 630.367 kb on + strand, within BBR_RS12840 at 630.388 kb on - strand, within BBR_RS12840 at 630.399 kb on + strand, within BBR_RS12840 at 630.407 kb on - strand, within BBR_RS12840 at 630.416 kb on + strand, within BBR_RS12840 at 630.416 kb on + strand, within BBR_RS12840 at 630.416 kb on + strand, within BBR_RS12840 at 630.434 kb on - strand, within BBR_RS12840 at 630.440 kb on + strand, within BBR_RS12840 at 630.478 kb on + strand, within BBR_RS12840 at 630.483 kb on + strand, within BBR_RS12840 at 630.524 kb on - strand, within BBR_RS12840 at 630.534 kb on - strand, within BBR_RS12840
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 21; day 7; diet=StandardDiet; sample=Cecum remove 627,568 + BBR_RS12825 0.52 +3.6 627,568 + BBR_RS12825 0.52 -1.6 627,575 + BBR_RS12825 0.53 +1.2 627,594 - BBR_RS12825 0.54 -0.2 627,594 - BBR_RS12825 0.54 +0.2 627,596 + BBR_RS12825 0.54 +0.0 627,604 + BBR_RS12825 0.55 -0.1 627,612 - BBR_RS12825 0.55 -1.6 627,612 - BBR_RS12825 0.55 +0.8 627,622 + BBR_RS12825 0.56 +0.4 627,635 + BBR_RS12825 0.57 +0.2 627,643 - BBR_RS12825 0.58 -1.6 627,683 + BBR_RS12825 0.61 -1.6 627,691 + BBR_RS12825 0.61 -0.9 627,691 + BBR_RS12825 0.61 -0.3 627,691 + BBR_RS12825 0.61 -1.6 627,691 + BBR_RS12825 0.61 -1.8 627,699 - BBR_RS12825 0.62 +1.4 627,736 + BBR_RS12825 0.64 -0.8 627,746 + BBR_RS12825 0.65 -1.2 627,751 + BBR_RS12825 0.65 +1.0 627,761 + BBR_RS12825 0.66 +0.1 627,761 + BBR_RS12825 0.66 -0.4 627,799 + BBR_RS12825 0.69 -1.2 627,834 - BBR_RS12825 0.72 +0.4 627,835 - BBR_RS12825 0.72 -1.3 627,835 - BBR_RS12825 0.72 -1.5 627,856 + BBR_RS12825 0.73 +1.0 627,856 + BBR_RS12825 0.73 -1.1 627,864 - BBR_RS12825 0.74 -0.3 627,894 - BBR_RS12825 0.76 +1.1 627,952 + BBR_RS12825 0.80 -0.6 627,960 - BBR_RS12825 0.81 -0.2 627,960 - BBR_RS12825 0.81 +0.1 627,960 - BBR_RS12825 0.81 -0.8 627,960 - BBR_RS12825 0.81 -0.6 627,960 - BBR_RS12825 0.81 -1.8 627,960 - BBR_RS12825 0.81 +1.7 627,962 - BBR_RS12825 0.81 +3.2 627,981 - BBR_RS12825 0.82 -2.4 627,985 + BBR_RS12825 0.83 +0.4 627,985 + BBR_RS12825 0.83 +0.5 627,985 + BBR_RS12825 0.83 -1.8 627,985 + BBR_RS12825 0.83 +1.2 627,986 - BBR_RS12825 0.83 +0.8 627,993 - BBR_RS12825 0.83 -1.0 627,993 - BBR_RS12825 0.83 -0.4 627,993 - BBR_RS12825 0.83 -1.0 627,999 - BBR_RS12825 0.84 +0.5 628,037 + BBR_RS12825 0.86 +1.4 628,037 + BBR_RS12825 0.86 +1.7 628,070 - BBR_RS12825 0.89 -0.4 628,124 + -0.9 628,131 + -0.1 628,234 + +2.5 628,234 + +2.5 628,261 + -1.2 628,269 - +0.6 628,291 + -0.8 628,313 - +0.2 628,372 + -0.3 628,390 - -0.8 628,392 + +0.9 628,392 + -0.3 628,403 - -0.2 628,410 + +0.2 628,488 - +0.8 628,488 - -1.6 628,509 + -0.3 628,516 - +1.4 628,542 + -2.2 628,542 + +0.4 628,687 - BBR_RS12830 0.12 -2.0 628,687 - BBR_RS12830 0.12 -0.7 628,734 - BBR_RS12830 0.17 -1.7 628,735 + BBR_RS12830 0.17 -1.9 628,745 - BBR_RS12830 0.18 -0.5 628,800 + BBR_RS12830 0.24 +0.2 628,813 - BBR_RS12830 0.25 -1.0 628,841 + BBR_RS12830 0.28 -0.6 628,856 - BBR_RS12830 0.29 -1.4 628,943 + BBR_RS12830 0.38 -0.9 629,036 + BBR_RS12830 0.48 -0.9 629,060 + BBR_RS12830 0.50 -1.9 629,075 - BBR_RS12830 0.52 -1.9 629,080 - BBR_RS12830 0.52 -1.0 629,085 - BBR_RS12830 0.53 -0.9 629,085 - BBR_RS12830 0.53 -1.0 629,091 - BBR_RS12830 0.53 -0.9 629,096 - BBR_RS12830 0.54 -1.8 629,104 - BBR_RS12830 0.54 -2.3 629,171 - BBR_RS12830 0.61 -0.5 629,199 - BBR_RS12830 0.64 -0.9 629,317 + BBR_RS12830 0.76 +0.5 629,323 - BBR_RS12830 0.77 -1.8 629,325 - BBR_RS12830 0.77 +0.0 629,335 - BBR_RS12830 0.78 -1.6 629,386 + BBR_RS12830 0.83 -0.7 629,396 + BBR_RS12830 0.84 -2.1 629,404 + BBR_RS12830 0.85 -1.0 629,404 + BBR_RS12830 0.85 -1.9 629,404 + BBR_RS12830 0.85 -1.5 629,412 + BBR_RS12830 0.86 -1.7 629,412 - BBR_RS12830 0.86 -2.9 629,420 - BBR_RS12830 0.87 -1.6 629,443 + BBR_RS12830 0.89 +0.1 629,445 - BBR_RS12830 0.89 -1.5 629,558 + -1.7 629,558 + -0.2 629,567 + -2.6 629,567 + -1.8 629,567 + -1.7 629,568 + -2.3 629,575 - -1.5 629,575 - +0.2 629,575 - -2.3 629,575 - -2.4 629,575 - -1.7 629,575 - -1.0 629,577 + -2.1 629,654 + -1.9 629,721 + -0.8 629,722 + +4.2 629,741 - -0.7 629,776 + BBR_RS12835 0.14 -0.7 629,776 - BBR_RS12835 0.14 -1.7 629,784 - BBR_RS12835 0.16 +0.3 629,784 - BBR_RS12835 0.16 -1.7 629,784 - BBR_RS12835 0.16 -1.4 629,784 - BBR_RS12835 0.16 +0.6 629,819 - BBR_RS12835 0.26 -0.4 629,839 - BBR_RS12835 0.31 -0.6 629,842 + BBR_RS12835 0.32 -1.1 629,854 - BBR_RS12835 0.35 +1.3 629,863 - BBR_RS12835 0.37 -1.4 629,997 + BBR_RS12835 0.73 -0.6 629,997 + BBR_RS12835 0.73 +0.0 629,997 + BBR_RS12835 0.73 -1.0 630,002 + BBR_RS12835 0.75 +1.5 630,002 + BBR_RS12835 0.75 -2.2 630,002 + BBR_RS12835 0.75 +1.3 630,005 - BBR_RS12835 0.76 -0.7 630,011 + BBR_RS12835 0.77 +0.8 630,024 - BBR_RS12835 0.81 +2.1 630,024 - BBR_RS12835 0.81 +0.7 630,068 + +1.0 630,118 + +5.1 630,120 + +1.7 630,120 + +1.9 630,126 - +1.0 630,128 - BBR_RS20730 0.10 -0.6 630,130 + BBR_RS20730 0.11 +2.8 630,130 + BBR_RS20730 0.11 -1.1 630,138 - BBR_RS20730 0.16 -0.2 630,141 + BBR_RS20730 0.17 -1.2 630,197 + BBR_RS20730 0.47 -2.4 630,202 + BBR_RS20730 0.50 +2.3 630,210 - BBR_RS20730 0.54 -0.7 630,265 - BBR_RS20730 0.84 +0.8 630,271 - BBR_RS20730 0.87 -1.2 630,284 + -0.6 630,294 + -2.3 630,323 - -0.1 630,367 + BBR_RS12840 0.12 -0.2 630,388 - BBR_RS12840 0.15 -2.6 630,399 + BBR_RS12840 0.17 -2.2 630,407 - BBR_RS12840 0.18 -0.3 630,416 + BBR_RS12840 0.19 -0.6 630,416 + BBR_RS12840 0.19 -3.2 630,416 + BBR_RS12840 0.19 -0.7 630,434 - BBR_RS12840 0.22 +0.5 630,440 + BBR_RS12840 0.23 -0.8 630,478 + BBR_RS12840 0.29 -0.3 630,483 + BBR_RS12840 0.30 +0.2 630,524 - BBR_RS12840 0.36 -1.5 630,534 - BBR_RS12840 0.38 -1.5
Or see this region's nucleotide sequence