Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_938

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,104,503	+				+0.6
1,104,504	-				-1.1
1,104,504	-				-0.8
1,104,537	+		Pf6N2E2_937	0.10	-1.3
1,104,537	+		Pf6N2E2_937	0.10	+1.6
1,104,538	-		Pf6N2E2_937	0.10	-0.6
1,104,653	+		Pf6N2E2_937	0.25	-1.1
1,104,827	+		Pf6N2E2_937	0.48	+1.3
1,104,827	+		Pf6N2E2_937	0.48	-0.5
1,104,827	+		Pf6N2E2_937	0.48	+1.6
1,104,828	-				+0.4
1,104,908	+		Pf6N2E2_937	0.59	+0.6
1,104,999	+		Pf6N2E2_937	0.71	-1.6
1,104,999	+		Pf6N2E2_937	0.71	-0.6
1,104,999	+		Pf6N2E2_937	0.71	-0.4
1,104,999	+		Pf6N2E2_937	0.71	+1.6
1,105,000	-		Pf6N2E2_937	0.71	-0.4
1,105,000	-		Pf6N2E2_937	0.71	-0.3
1,105,000	-		Pf6N2E2_937	0.71	+0.6
1,105,000	-		Pf6N2E2_937	0.71	+0.9
1,105,000	-		Pf6N2E2_937	0.71	+1.6
1,105,000	-		Pf6N2E2_937	0.71	-0.5
1,105,000	-		Pf6N2E2_937	0.71	-1.0
1,105,000	-		Pf6N2E2_937	0.71	-0.1
1,105,000	-		Pf6N2E2_937	0.71	-0.6
1,105,066	+		Pf6N2E2_937	0.80	+0.0
1,105,066	+		Pf6N2E2_937	0.80	-0.1
1,105,066	+		Pf6N2E2_937	0.80	+0.6
1,105,067	-		Pf6N2E2_937	0.80	+1.6
1,105,067	-		Pf6N2E2_937	0.80	-1.2
1,105,122	+		Pf6N2E2_937	0.87	+1.6
1,105,127	-		Pf6N2E2_937	0.88	+0.2
1,105,199	-				+1.2
1,105,304	+				-0.5
1,105,305	-				-1.5
1,105,305	-				+1.0
1,105,328	-				+0.0
1,105,328	-				+0.4
1,105,453	+				+0.6
1,105,472	-				-1.6
1,105,594	-		Pf6N2E2_938	0.28	+1.6
1,105,594	-		Pf6N2E2_938	0.28	-0.4
1,105,594	-		Pf6N2E2_938	0.28	-1.8
1,105,594	-		Pf6N2E2_938	0.28	-2.4
1,105,594	-		Pf6N2E2_938	0.28	-1.6
1,105,612	+		Pf6N2E2_938	0.31	+0.8
1,105,612	+		Pf6N2E2_938	0.31	+1.6
1,105,613	-		Pf6N2E2_938	0.32	-0.2
1,105,613	-		Pf6N2E2_938	0.32	-1.1
1,105,613	-		Pf6N2E2_938	0.32	-2.3
1,105,613	-		Pf6N2E2_938	0.32	+0.6
1,105,613	-		Pf6N2E2_938	0.32	-1.6
1,105,615	-		Pf6N2E2_938	0.32	-1.4
1,105,615	-		Pf6N2E2_938	0.32	-0.2
1,105,638	+		Pf6N2E2_938	0.36	-0.4
1,105,646	-		Pf6N2E2_938	0.37	-1.6
1,105,646	-				+0.0
1,105,646	-		Pf6N2E2_938	0.37	-0.5
1,105,719	+		Pf6N2E2_938	0.50	+1.6
1,105,720	-		Pf6N2E2_938	0.50	-0.7
1,105,720	-		Pf6N2E2_938	0.50	+1.6
1,106,067	+				-1.4
1,106,067	+				+0.1
1,106,068	-				+1.6
1,106,068	-				+1.6
1,106,095	-				+0.5
1,106,095	-				-0.4
1,106,095	-				+0.6
1,106,192	-				-0.8
1,106,257	+				+0.5
1,106,257	+				+0.8
1,106,257	+				-0.1
1,106,259	+				-0.1
1,106,259	+				-0.5
1,106,295	+				-0.1
1,106,295	+				-0.2
1,106,299	+				-0.7
1,106,299	+				+0.3
1,106,299	+				-0.2
1,106,299	+				+0.2
1,106,299	+				-0.2
1,106,299	+				-0.8
1,106,300	-				+1.6
1,106,372	+				+0.7
1,106,372	+				-0.1
1,106,524	+		Pf6N2E2_939	0.19	-0.4
1,106,525	-		Pf6N2E2_939	0.20	-1.1
1,106,592	+		Pf6N2E2_939	0.32	-0.1
1,106,593	-		Pf6N2E2_939	0.32	-1.0
1,106,673	+		Pf6N2E2_939	0.47	+1.6
1,106,674	-		Pf6N2E2_939	0.48	+1.6