Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5489

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
6,306,781	+		Pf6N2E2_5488	0.60	-2.1
6,306,782	-		Pf6N2E2_5488	0.60	-0.1
6,307,009	+		Pf6N2E2_5488	0.73	-1.9
6,307,009	+		Pf6N2E2_5488	0.73	-0.2
6,307,010	-		Pf6N2E2_5488	0.73	+1.4
6,307,010	-		Pf6N2E2_5488	0.73	-0.6
6,307,081	+		Pf6N2E2_5488	0.77	-0.2
6,307,082	-		Pf6N2E2_5488	0.77	+0.3
6,307,096	+		Pf6N2E2_5488	0.77	+0.8
6,307,096	+		Pf6N2E2_5488	0.77	+1.6
6,307,096	+		Pf6N2E2_5488	0.77	-0.1
6,307,096	+		Pf6N2E2_5488	0.77	+0.3
6,307,096	+		Pf6N2E2_5488	0.77	-1.0
6,307,097	-		Pf6N2E2_5488	0.78	-0.7
6,307,097	-		Pf6N2E2_5488	0.78	+0.3
6,307,097	-		Pf6N2E2_5488	0.78	-1.0
6,307,097	-		Pf6N2E2_5488	0.78	-0.0
6,307,111	+		Pf6N2E2_5488	0.78	+1.1
6,307,111	+		Pf6N2E2_5488	0.78	+0.1
6,307,111	+		Pf6N2E2_5488	0.78	-0.7
6,307,111	+		Pf6N2E2_5488	0.78	+0.2
6,307,111	+		Pf6N2E2_5488	0.78	-1.4
6,307,111	+		Pf6N2E2_5488	0.78	-1.3
6,307,111	+		Pf6N2E2_5488	0.78	-0.6
6,307,111	+		Pf6N2E2_5488	0.78	-0.1
6,307,111	+		Pf6N2E2_5488	0.78	+0.2
6,307,111	+		Pf6N2E2_5488	0.78	-0.3
6,307,111	+		Pf6N2E2_5488	0.78	-0.2
6,307,111	+		Pf6N2E2_5488	0.78	-0.0
6,307,111	+		Pf6N2E2_5488	0.78	+0.4
6,307,112	-		Pf6N2E2_5488	0.78	-0.1
6,307,112	-		Pf6N2E2_5488	0.78	+0.6
6,307,112	-		Pf6N2E2_5488	0.78	+0.5
6,307,112	-		Pf6N2E2_5488	0.78	+1.6
6,307,112	-		Pf6N2E2_5488	0.78	+0.1
6,307,112	-		Pf6N2E2_5488	0.78	+1.0
6,307,112	-		Pf6N2E2_5488	0.78	-0.6
6,307,112	-		Pf6N2E2_5488	0.78	-0.8
6,307,224	+		Pf6N2E2_5488	0.85	-0.0
6,307,224	+		Pf6N2E2_5488	0.85	+0.1
6,307,224	+		Pf6N2E2_5488	0.85	-0.0
6,307,224	+		Pf6N2E2_5488	0.85	-0.2
6,307,224	+		Pf6N2E2_5488	0.85	-0.8
6,307,225	-		Pf6N2E2_5488	0.85	-0.8
6,307,225	-		Pf6N2E2_5488	0.85	+1.3
6,307,225	-		Pf6N2E2_5488	0.85	+0.1
6,307,225	-		Pf6N2E2_5488	0.85	-0.0
6,307,225	-		Pf6N2E2_5488	0.85	+0.1
6,307,225	-		Pf6N2E2_5488	0.85	-0.8
6,307,269	+		Pf6N2E2_5488	0.87	+0.5
6,307,269	+		Pf6N2E2_5488	0.87	+0.7
6,307,270	-		Pf6N2E2_5488	0.87	-1.8
6,307,270	-		Pf6N2E2_5488	0.87	+2.6
6,307,270	-		Pf6N2E2_5488	0.87	+0.8
6,307,270	-		Pf6N2E2_5488	0.87	-0.4
6,307,342	+				+0.2
6,307,342	+				-0.6
6,307,456	+				+1.6
6,307,456	+				+0.2
6,307,457	-				-1.4
6,307,475	+				+0.0
6,307,481	+				+0.7
6,307,481	+				-0.8
6,307,481	+				+1.6
6,307,482	-				+1.1
6,307,482	-				+0.4
6,307,563	+				-0.4
6,307,563	+				-0.1
6,307,563	+				-0.2
6,307,564	-				+0.1
6,307,739	+				-0.9
6,307,739	+				+0.6
6,307,740	-				+2.3
6,309,298	-				+1.6
6,309,298	-				-0.4
6,309,342	+		Pf6N2E2_5490	0.20	+1.8
6,309,343	-		Pf6N2E2_5490	0.21	-0.0
6,309,343	-		Pf6N2E2_5490	0.21	-0.6
6,309,343	-		Pf6N2E2_5490	0.21	-1.4
6,309,343	-		Pf6N2E2_5490	0.21	+2.3
6,309,343	-		Pf6N2E2_5490	0.21	-0.6
6,309,343	-		Pf6N2E2_5490	0.21	+0.6
6,309,343	-		Pf6N2E2_5490	0.21	-0.4
6,309,345	-		Pf6N2E2_5490	0.22	-0.2
6,309,345	-		Pf6N2E2_5490	0.22	-0.0
6,309,391	-		Pf6N2E2_5490	0.45	-1.5
6,309,391	-		Pf6N2E2_5490	0.45	-1.7
6,309,391	-		Pf6N2E2_5490	0.45	-0.1
6,309,391	-		Pf6N2E2_5490	0.45	+0.2
6,309,391	-		Pf6N2E2_5490	0.45	-0.5
6,309,391	-		Pf6N2E2_5490	0.45	+0.4
6,309,391	-		Pf6N2E2_5490	0.45	+0.3
6,309,391	-		Pf6N2E2_5490	0.45	-0.6
6,309,391	-		Pf6N2E2_5490	0.45	+0.1
6,309,661	-				-0.6
6,309,671	-				+1.6
6,309,671	-				-1.8
6,309,695	-				+0.2
6,309,695	-				-0.6
6,309,695	-				+0.8
6,309,695	-				-0.8
6,309,747	-				+0.1
6,309,798	+				-0.4
6,309,798	+				+0.3
6,309,799	-				+0.6
6,309,799	-				-0.3
6,309,817	+				-0.7
6,309,817	+				-1.2
6,309,846	+				-1.0
6,309,846	+				+1.0
6,309,846	+				-0.4
6,309,846	+				+1.6
6,309,846	+				-0.4
6,309,847	-				-0.6
6,309,847	-				+0.6
6,309,847	-				+0.2
6,309,847	-				-0.0
6,309,847	-				+1.6
6,310,050	+		Pf6N2E2_5491	0.28	+0.4
6,310,050	+		Pf6N2E2_5491	0.28	-0.7
6,310,050	+		Pf6N2E2_5491	0.28	-1.9
6,310,050	+		Pf6N2E2_5491	0.28	+0.6
6,310,050	+		Pf6N2E2_5491	0.28	-1.0
6,310,050	+		Pf6N2E2_5491	0.28	-0.2
6,310,050	+		Pf6N2E2_5491	0.28	-0.2
6,310,051	-		Pf6N2E2_5491	0.28	-1.2
6,310,051	-		Pf6N2E2_5491	0.28	-0.2
6,310,051	-		Pf6N2E2_5491	0.28	-0.5
6,310,054	+		Pf6N2E2_5491	0.29	-1.0
6,310,054	+		Pf6N2E2_5491	0.29	-0.3
6,310,055	-		Pf6N2E2_5491	0.29	-2.3
6,310,055	-		Pf6N2E2_5491	0.29	-1.6
6,310,055	-		Pf6N2E2_5491	0.29	-0.6
6,310,139	+		Pf6N2E2_5491	0.36	+0.0
6,310,140	-		Pf6N2E2_5491	0.36	-0.2
6,310,142	+		Pf6N2E2_5491	0.36	-0.7
6,310,142	+		Pf6N2E2_5491	0.36	-0.1
6,310,142	+		Pf6N2E2_5491	0.36	-1.6
6,310,143	-		Pf6N2E2_5491	0.37	-0.6
6,310,143	-		Pf6N2E2_5491	0.37	-0.8
6,310,158	+		Pf6N2E2_5491	0.38	+0.2
6,310,159	-		Pf6N2E2_5491	0.38	+0.1
6,310,249	-		Pf6N2E2_5491	0.46	-0.1
6,310,249	-		Pf6N2E2_5491	0.46	-0.2
6,310,249	-		Pf6N2E2_5491	0.46	-0.8
6,310,258	+		Pf6N2E2_5491	0.47	-0.2
6,310,258	+		Pf6N2E2_5491	0.47	+0.2
6,310,258	+		Pf6N2E2_5491	0.47	-0.0
6,310,259	-		Pf6N2E2_5491	0.47	-1.3
6,310,259	-		Pf6N2E2_5491	0.47	-0.7
6,310,259	-		Pf6N2E2_5491	0.47	+1.6