Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3449

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,016,619	-		Pf6N2E2_3447	0.79	-0.2
4,016,724	+				-0.1
4,016,877	-		Pf6N2E2_3448	0.27	-0.3
4,016,945	-		Pf6N2E2_3448	0.36	-0.9
4,017,079	+		Pf6N2E2_3448	0.53	-0.1
4,017,080	-		Pf6N2E2_3448	0.53	+0.5
4,017,080	-		Pf6N2E2_3448	0.53	+0.2
4,017,080	-		Pf6N2E2_3448	0.53	-0.6
4,017,080	-		Pf6N2E2_3448	0.53	+0.9
4,017,080	-		Pf6N2E2_3448	0.53	-0.2
4,017,080	-		Pf6N2E2_3448	0.53	+0.4
4,017,147	-		Pf6N2E2_3448	0.62	-0.5
4,017,147	-		Pf6N2E2_3448	0.62	-0.3
4,017,415	+				+0.8
4,017,480	+				-1.0
4,017,482	+				-1.6
4,017,482	+				-1.6
4,017,482	+				+0.5
4,017,483	-				+0.1
4,017,543	-				-0.4
4,017,596	-				+0.5
4,017,612	+				-0.2
4,017,901	-		Pf6N2E2_3449	0.36	+0.4
4,017,901	-		Pf6N2E2_3449	0.36	-0.3
4,018,085	-		Pf6N2E2_3449	0.57	-0.3
4,018,129	+		Pf6N2E2_3449	0.62	-0.8
4,018,158	+		Pf6N2E2_3449	0.65	+0.0
4,018,158	+		Pf6N2E2_3449	0.65	+0.4
4,018,159	-		Pf6N2E2_3449	0.65	-0.3
4,018,159	-		Pf6N2E2_3449	0.65	+0.1
4,018,159	-		Pf6N2E2_3449	0.65	+0.9
4,018,159	-		Pf6N2E2_3449	0.65	+0.4
4,018,159	-		Pf6N2E2_3449	0.65	+0.1
4,018,159	-		Pf6N2E2_3449	0.65	+0.7
4,018,229	+		Pf6N2E2_3449	0.73	-0.7
4,018,229	+		Pf6N2E2_3449	0.73	+0.1
4,018,229	+		Pf6N2E2_3449	0.73	+1.3
4,018,229	+		Pf6N2E2_3449	0.73	-0.1
4,018,230	-		Pf6N2E2_3449	0.73	+0.9
4,018,230	-		Pf6N2E2_3449	0.73	+0.3
4,018,230	-		Pf6N2E2_3449	0.73	-0.1
4,018,230	-		Pf6N2E2_3449	0.73	+0.5
4,018,230	-		Pf6N2E2_3449	0.73	+0.5
4,018,230	-		Pf6N2E2_3449	0.73	-0.8
4,018,230	-		Pf6N2E2_3449	0.73	+0.4
4,018,230	-		Pf6N2E2_3449	0.73	-0.3
4,018,230	-		Pf6N2E2_3449	0.73	-0.1
4,018,274	+		Pf6N2E2_3449	0.78	+0.9
4,018,274	+		Pf6N2E2_3449	0.78	-0.2
4,018,275	-		Pf6N2E2_3449	0.79	+1.5
4,018,275	-		Pf6N2E2_3449	0.79	-0.1
4,018,275	-		Pf6N2E2_3449	0.79	+0.2
4,018,347	+		Pf6N2E2_3449	0.87	-0.1
4,018,347	+		Pf6N2E2_3449	0.87	+0.1
4,018,347	+		Pf6N2E2_3449	0.87	+0.2
4,018,348	-		Pf6N2E2_3449	0.87	+0.1
4,018,348	-		Pf6N2E2_3449	0.87	+0.2
4,018,503	+				+0.5
4,018,503	+				-1.0
4,018,503	+				+0.5
4,018,669	+		Pf6N2E2_3450	0.31	-0.5
4,018,669	+		Pf6N2E2_3450	0.31	-0.1
4,018,670	-		Pf6N2E2_3450	0.32	-1.4
4,018,670	-		Pf6N2E2_3450	0.32	-0.3
4,018,729	+		Pf6N2E2_3450	0.49	-0.7
4,018,729	+		Pf6N2E2_3450	0.49	-0.5
4,018,730	-		Pf6N2E2_3450	0.49	+0.9
4,018,730	-		Pf6N2E2_3450	0.49	-2.0
4,018,739	-		Pf6N2E2_3450	0.52	+0.9
4,018,754	-		Pf6N2E2_3450	0.56	-0.4
4,018,754	-		Pf6N2E2_3450	0.56	+0.5
4,018,774	+		Pf6N2E2_3450	0.62	-0.3
4,018,888	+				-0.8
4,019,059	+				+0.1
4,019,059	+				-0.4
4,019,059	+				-0.8
4,019,059	+				-0.5
4,019,059	+				-0.3
4,019,059	+				-0.9
4,019,059	+				+1.5
4,019,059	+				+0.3
4,019,059	+				-0.8
4,019,059	+				-0.1
4,019,059	+				+0.8
4,019,060	-				+0.2
4,019,060	-				+1.1
4,019,060	-				+0.2
4,019,060	-				+0.8
4,019,060	-				-0.8
4,019,060	-				-1.9
4,019,062	+				-1.1
4,019,062	+				+0.5
4,019,062	+				-0.1
4,019,063	-				-1.0
4,019,063	-				+0.6
4,019,115	+				-2.6
4,019,115	+				+0.6
4,019,115	+				+0.4
4,019,115	+				-0.5
4,019,116	-				+0.1
4,019,116	-				-0.3
4,019,225	-		Pf6N2E2_3451	0.21	+1.5
4,019,225	-		Pf6N2E2_3451	0.21	+0.4
4,019,225	-		Pf6N2E2_3451	0.21	+0.9
4,019,274	+		Pf6N2E2_3451	0.26	-0.8
4,019,274	+		Pf6N2E2_3451	0.26	-1.1
4,019,274	+		Pf6N2E2_3451	0.26	-0.4
4,019,274	+		Pf6N2E2_3451	0.26	-0.9
4,019,274	+		Pf6N2E2_3451	0.26	-0.9
4,019,274	+		Pf6N2E2_3451	0.26	+0.1
4,019,275	-		Pf6N2E2_3451	0.27	-0.3
4,019,275	-		Pf6N2E2_3451	0.27	-1.1
4,019,275	-		Pf6N2E2_3451	0.27	-0.2
4,019,275	-		Pf6N2E2_3451	0.27	+1.5