Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2078

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
2,470,590	+				-0.2
2,470,595	+				-0.1
2,470,596	-				-0.7
2,470,609	-				-0.2
2,470,609	-				-0.2
2,470,609	-				+0.8
2,470,609	-				-0.5
2,470,609	-				+1.2
2,470,609	-				+0.3
2,470,619	+				+0.2
2,470,620	-				-1.2
2,470,620	-				-0.6
2,470,620	-				+0.3
2,470,620	-				-0.5
2,470,656	-				-0.0
2,471,094	+				-1.2
2,471,095	-				-0.0
2,471,363	+		Pf6N2E2_2078	0.12	+0.1
2,471,363	+		Pf6N2E2_2078	0.12	+1.0
2,471,364	-		Pf6N2E2_2078	0.12	+0.0
2,471,364	-		Pf6N2E2_2078	0.12	-0.7
2,471,364	-		Pf6N2E2_2078	0.12	+2.6
2,471,364	-		Pf6N2E2_2078	0.12	+0.7
2,471,364	-		Pf6N2E2_2078	0.12	+0.3
2,471,493	-		Pf6N2E2_2078	0.19	+0.1
2,471,569	+		Pf6N2E2_2078	0.24	+0.3
2,471,569	+		Pf6N2E2_2078	0.24	-0.0
2,471,569	+		Pf6N2E2_2078	0.24	+0.7
2,471,569	+		Pf6N2E2_2078	0.24	+0.5
2,471,569	+		Pf6N2E2_2078	0.24	-0.4
2,471,569	+		Pf6N2E2_2078	0.24	+0.4
2,471,569	+		Pf6N2E2_2078	0.24	-0.5
2,471,570	-		Pf6N2E2_2078	0.24	+0.7
2,471,570	-		Pf6N2E2_2078	0.24	-0.0
2,471,570	-		Pf6N2E2_2078	0.24	+1.6
2,471,570	-		Pf6N2E2_2078	0.24	+0.0
2,471,570	-		Pf6N2E2_2078	0.24	+0.8
2,471,570	-		Pf6N2E2_2078	0.24	-0.7
2,471,626	+		Pf6N2E2_2078	0.27	-0.6
2,471,626	+		Pf6N2E2_2078	0.27	-0.1
2,471,626	+		Pf6N2E2_2078	0.27	+1.0
2,471,626	+		Pf6N2E2_2078	0.27	-0.6
2,471,626	+		Pf6N2E2_2078	0.27	+0.1
2,471,627	-		Pf6N2E2_2078	0.27	+0.2
2,471,627	-		Pf6N2E2_2078	0.27	-0.1
2,471,627	-		Pf6N2E2_2078	0.27	-0.4
2,471,627	-		Pf6N2E2_2078	0.27	+1.6
2,471,627	-		Pf6N2E2_2078	0.27	+0.1
2,471,659	+		Pf6N2E2_2078	0.29	+1.6
2,471,659	+		Pf6N2E2_2078	0.29	+0.1
2,471,659	+		Pf6N2E2_2078	0.29	-0.4
2,471,660	-		Pf6N2E2_2078	0.29	+1.6
2,471,660	-		Pf6N2E2_2078	0.29	+1.6
2,471,660	-		Pf6N2E2_2078	0.29	+0.5
2,471,660	-		Pf6N2E2_2078	0.29	+0.2
2,471,786	+		Pf6N2E2_2078	0.36	+1.6
2,471,815	+		Pf6N2E2_2078	0.38	+1.3
2,471,815	+		Pf6N2E2_2078	0.38	+0.5
2,471,816	-		Pf6N2E2_2078	0.38	+0.0
2,471,822	-		Pf6N2E2_2078	0.38	+1.6
2,471,822	-		Pf6N2E2_2078	0.38	-1.0
2,471,908	-		Pf6N2E2_2078	0.43	-0.4
2,471,908	-		Pf6N2E2_2078	0.43	+0.3
2,472,058	+		Pf6N2E2_2078	0.52	+0.8
2,472,059	-		Pf6N2E2_2078	0.52	+1.1
2,472,115	+		Pf6N2E2_2078	0.55	+0.1
2,472,115	+		Pf6N2E2_2078	0.55	+0.1
2,472,115	+		Pf6N2E2_2078	0.55	+0.8
2,472,115	+		Pf6N2E2_2078	0.55	+1.0
2,472,115	+		Pf6N2E2_2078	0.55	-0.3
2,472,116	-		Pf6N2E2_2078	0.55	+2.6
2,472,116	-		Pf6N2E2_2078	0.55	-0.4
2,472,116	-		Pf6N2E2_2078	0.55	+1.6
2,472,293	+		Pf6N2E2_2078	0.66	+1.1
2,472,293	+		Pf6N2E2_2078	0.66	+0.2
2,472,293	+		Pf6N2E2_2078	0.66	+1.6
2,472,293	+		Pf6N2E2_2078	0.66	+0.6
2,472,293	+		Pf6N2E2_2078	0.66	-1.0
2,472,293	+		Pf6N2E2_2078	0.66	+0.5
2,472,294	-		Pf6N2E2_2078	0.66	-0.3
2,472,294	-		Pf6N2E2_2078	0.66	+0.9
2,472,294	-		Pf6N2E2_2078	0.66	+1.6
2,472,294	-		Pf6N2E2_2078	0.66	-0.2
2,472,294	-		Pf6N2E2_2078	0.66	-0.3
2,472,294	-		Pf6N2E2_2078	0.66	+1.1
2,472,463	+		Pf6N2E2_2078	0.76	-0.4
2,472,463	+		Pf6N2E2_2078	0.76	+0.0
2,472,475	+		Pf6N2E2_2078	0.76	-1.0
2,472,484	+		Pf6N2E2_2078	0.77	+0.4
2,472,484	+		Pf6N2E2_2078	0.77	+1.6
2,472,484	+		Pf6N2E2_2078	0.77	-0.1
2,472,484	+		Pf6N2E2_2078	0.77	+0.4
2,472,484	+		Pf6N2E2_2078	0.77	+0.1
2,472,485	-		Pf6N2E2_2078	0.77	+0.8
2,472,485	-		Pf6N2E2_2078	0.77	+1.2
2,472,485	-		Pf6N2E2_2078	0.77	+0.6
2,472,664	+		Pf6N2E2_2078	0.87	+0.6
2,472,664	+		Pf6N2E2_2078	0.87	+0.3
2,472,665	-		Pf6N2E2_2078	0.87	-0.4
2,472,880	+				-1.1
2,472,913	+				+2.6
2,472,913	+				-0.2
2,472,913	+				-1.4
2,472,913	+				-0.3
2,472,914	-				+1.6
2,472,914	-				+0.4
2,472,914	-				-0.5
2,472,914	-				+0.5
2,472,914	-				-1.0
2,472,914	-				+0.8
2,472,914	-				-1.3
2,472,914	-				+0.1
2,472,914	-				-0.6
2,473,091	+		Pf6N2E2_2079	0.17	+0.4
2,473,381	+		Pf6N2E2_2079	0.50	-0.6
2,473,381	+		Pf6N2E2_2079	0.50	-0.1
2,473,382	-		Pf6N2E2_2079	0.50	-0.5
2,473,382	-				+0.5
2,473,382	-		Pf6N2E2_2079	0.50	+0.2
2,473,412	+		Pf6N2E2_2079	0.54	-0.4
2,473,413	-		Pf6N2E2_2079	0.54	+1.4
2,473,413	-		Pf6N2E2_2079	0.54	-0.2
2,473,413	-		Pf6N2E2_2079	0.54	+0.2
2,473,471	+		Pf6N2E2_2079	0.61	-1.4
2,473,472	-		Pf6N2E2_2079	0.61	+0.3
2,473,472	-		Pf6N2E2_2079	0.61	+0.2
2,473,477	+		Pf6N2E2_2079	0.61	-0.4
2,473,477	+		Pf6N2E2_2079	0.61	+0.7
2,473,478	-		Pf6N2E2_2079	0.62	-2.1
2,473,478	-		Pf6N2E2_2079	0.62	-0.9
2,473,478	-		Pf6N2E2_2079	0.62	-0.1
2,473,579	+		Pf6N2E2_2079	0.73	-0.1
2,473,579	+		Pf6N2E2_2079	0.73	+0.0
2,473,579	+		Pf6N2E2_2079	0.73	-0.4
2,473,579	+		Pf6N2E2_2079	0.73	-0.3
2,473,579	+		Pf6N2E2_2079	0.73	+0.6
2,473,580	-		Pf6N2E2_2079	0.73	-1.0
2,473,580	-		Pf6N2E2_2079	0.73	-0.8
2,473,580	-		Pf6N2E2_2079	0.73	-1.1
2,473,580	-		Pf6N2E2_2079	0.73	+0.6
2,473,607	-		Pf6N2E2_2079	0.77	-0.1
2,473,633	+		Pf6N2E2_2079	0.80	-0.1
2,473,633	+		Pf6N2E2_2079	0.80	-0.1
2,473,633	+		Pf6N2E2_2079	0.80	-1.0
2,473,634	-		Pf6N2E2_2079	0.80	+0.2
2,473,693	+		Pf6N2E2_2079	0.86	-0.4
2,473,693	+		Pf6N2E2_2079	0.86	-0.7
2,473,810	+				+0.6
2,473,810	+				-0.2
2,473,833	+				-0.9
2,473,834	-				+0.3