Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14565

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
3,255,044	+		PFLU_RS14560	0.22	-0.2
3,255,044	+		PFLU_RS14560	0.22	+0.1
3,255,044	+		PFLU_RS14560	0.22	-0.5
3,255,045	-		PFLU_RS14560	0.22	-0.5
3,255,045	-		PFLU_RS14560	0.22	+1.5
3,255,045	-		PFLU_RS14560	0.22	-0.9
3,255,045	-		PFLU_RS14560	0.22	-0.5
3,255,045	-		PFLU_RS14560	0.22	+1.3
3,255,045	-		PFLU_RS14560	0.22	+0.5
3,255,364	-		PFLU_RS14560	0.53	+0.0
3,255,519	-		PFLU_RS14560	0.69	+1.1
3,255,696	+		PFLU_RS14560	0.86	+1.1
3,255,697	-		PFLU_RS14560	0.87	+0.3
3,255,744	-				-0.8
3,255,744	-				-0.3
3,255,803	+				+0.5
3,255,804	-				+0.5
3,255,804	-				+2.3
3,255,804	-				-0.7
3,255,804	-				-0.2
3,255,812	-				+0.5
3,255,814	+				+0.7
3,255,814	+				+0.5
3,255,815	-				+0.5
3,255,815	-				+1.5
3,255,872	-				-0.7
3,255,879	+				-1.2
3,255,919	-				+0.5
3,255,938	+				-0.3
3,255,938	+				+1.4
3,255,962	-				+2.1
3,255,972	+				+1.3
3,255,972	+				-0.8
3,255,972	+				+0.6
3,255,972	+				-0.4
3,255,972	+				-0.5
3,255,972	+				+0.3
3,255,972	+				+0.5
3,255,972	+				-0.7
3,255,972	+				+0.5
3,255,972	+				-1.7
3,255,972	+				+1.8
3,255,972	+				-1.0
3,255,972	+				-1.1
3,255,972	+				+1.4
3,255,972	+				+1.5
3,255,972	+				-1.7
3,255,972	+				-2.5
3,255,972	+				-1.5
3,255,972	+				+1.9
3,255,972	+				+0.1
3,255,972	+				+1.5
3,255,972	+				-1.0
3,255,972	+				+0.1
3,255,972	+				+0.5
3,255,972	+				-1.2
3,255,972	+				+1.8
3,255,972	+				+1.1
3,255,972	+				-0.0
3,255,972	+				-0.2
3,255,972	+				+0.5
3,255,972	+				+0.1
3,255,972	+				+1.4
3,255,972	+				-0.4
3,255,972	+				+0.2
3,255,973	-				-1.3
3,255,973	-				+1.9
3,255,973	-				+0.1
3,255,973	-				-1.3
3,255,973	-				+2.6
3,255,973	-				-0.5
3,255,973	-				+1.5
3,255,973	-				+1.1
3,255,973	-				+1.7
3,255,973	-				-0.2
3,255,973	-				+1.8
3,255,973	-				-0.7
3,255,973	-				-0.5
3,255,973	-				+0.5
3,255,973	-				+1.9
3,255,973	-				+0.5
3,255,973	-				-2.3
3,255,973	-				+0.5
3,255,973	-				+2.5
3,255,973	-				-0.6
3,255,973	-				+1.2
3,255,973	-				+0.1
3,255,973	-				+0.8
3,255,973	-				-1.3
3,255,973	-				+0.1
3,255,973	-				+1.8
3,255,973	-				-0.7
3,255,973	-				-0.6
3,255,973	-				-0.5
3,255,973	-				+1.1
3,255,987	+				-1.3
3,256,022	-				+1.1
3,256,022	-				-1.0
3,256,022	-				-0.2
3,256,061	-				-0.8
3,256,135	+		PFLU_RS14565	0.14	-0.5
3,256,157	+		PFLU_RS14565	0.17	+2.9
3,256,158	-		PFLU_RS14565	0.17	-1.3
3,256,158	-		PFLU_RS14565	0.17	+0.9
3,256,170	+		PFLU_RS14565	0.18	+0.5
3,256,170	+		PFLU_RS14565	0.18	+4.4
3,256,170	+		PFLU_RS14565	0.18	+1.8
3,256,171	-		PFLU_RS14565	0.18	-0.1
3,256,171	-		PFLU_RS14565	0.18	+1.9
3,256,171	-		PFLU_RS14565	0.18	-0.8
3,256,171	-		PFLU_RS14565	0.18	-0.6
3,256,175	+		PFLU_RS14565	0.18	-2.3
3,256,176	-		PFLU_RS14565	0.19	-0.2
3,256,176	-		PFLU_RS14565	0.19	-0.9
3,256,209	+		PFLU_RS14565	0.22	+1.1
3,256,209	+		PFLU_RS14565	0.22	+3.4
3,256,209	+		PFLU_RS14565	0.22	-1.9
3,256,209	+		PFLU_RS14565	0.22	+2.5
3,256,209	+		PFLU_RS14565	0.22	+1.6
3,256,209	+		PFLU_RS14565	0.22	+2.1
3,256,209	+		PFLU_RS14565	0.22	+1.2
3,256,209	+		PFLU_RS14565	0.22	-0.3
3,256,209	+		PFLU_RS14565	0.22	-0.7
3,256,209	+		PFLU_RS14565	0.22	+2.0
3,256,210	-		PFLU_RS14565	0.22	+0.3
3,256,210	-		PFLU_RS14565	0.22	-0.7
3,256,210	-		PFLU_RS14565	0.22	+4.3
3,256,210	-		PFLU_RS14565	0.22	-0.1
3,256,210	-		PFLU_RS14565	0.22	+1.1
3,256,210	-		PFLU_RS14565	0.22	+0.3
3,256,210	-		PFLU_RS14565	0.22	+0.5
3,256,210	-		PFLU_RS14565	0.22	+0.6
3,256,236	+		PFLU_RS14565	0.25	-2.3
3,256,237	-		PFLU_RS14565	0.25	+1.2
3,256,262	+		PFLU_RS14565	0.28	-1.3
3,256,262	+		PFLU_RS14565	0.28	-1.7
3,256,263	-		PFLU_RS14565	0.28	-0.2
3,256,522	+		PFLU_RS14565	0.56	+1.7
3,256,522	+		PFLU_RS14565	0.56	+2.2
3,256,523	-		PFLU_RS14565	0.56	+0.5
3,256,523	-		PFLU_RS14565	0.56	+1.3
3,256,567	+		PFLU_RS14565	0.60	+0.4
3,256,567	+		PFLU_RS14565	0.60	-1.8
3,256,567	+		PFLU_RS14565	0.60	+1.7
3,256,568	-		PFLU_RS14565	0.61	-1.5
3,256,568	-		PFLU_RS14565	0.61	+0.3
3,256,568	-		PFLU_RS14565	0.61	-0.2
3,256,568	-		PFLU_RS14565	0.61	+0.7
3,256,609	+		PFLU_RS14565	0.65	+1.1
3,256,609	+		PFLU_RS14565	0.65	+0.8
3,256,765	+		PFLU_RS14565	0.82	-1.0
3,256,765	+		PFLU_RS14565	0.82	-0.7
3,256,766	-		PFLU_RS14565	0.82	+2.1
3,256,766	-		PFLU_RS14565	0.82	+1.3
3,256,766	-		PFLU_RS14565	0.82	+0.7
3,256,766	-		PFLU_RS14565	0.82	+2.7
3,256,843	+				+0.3
3,256,843	+				+1.4
3,256,843	+				+0.5
3,256,843	+				-0.5
3,256,843	+				-1.9
3,256,843	+				-1.9
3,256,844	-				+0.1
3,256,844	-				+1.1
3,256,844	-				+0.2
3,256,844	-				+1.1
3,256,844	-				+2.1
3,256,879	+				-0.9
3,256,879	+				+0.5
3,256,879	+				-0.7
3,256,879	+				+1.1
3,256,880	-				-0.7
3,256,880	-				+1.1
3,256,880	-				+0.5
3,256,880	-				-0.5
3,256,945	+				+0.7
3,256,945	+				-2.3
3,256,946	-				-2.0
3,256,948	+				+0.6
3,256,949	-				-1.8
3,256,951	+				+1.0
3,256,951	+				+2.1
3,256,951	+				-0.9
3,256,951	+				-0.9
3,256,952	-				+0.1
3,256,952	-				+3.7
3,256,952	-				-1.0
3,256,965	-				+2.8
3,257,023	+				-1.6
3,257,057	-				+2.9
3,257,085	+				-2.9
3,257,085	+				+2.1
3,257,086	-				-0.5
3,257,086	-				+2.1
3,257,144	+		PFLU_RS14570	0.11	-0.7
3,257,144	+		PFLU_RS14570	0.11	+2.1
3,257,144	+		PFLU_RS14570	0.11	+0.1
3,257,144	+		PFLU_RS14570	0.11	+4.2
3,257,145	-		PFLU_RS14570	0.12	+1.1
3,257,145	-		PFLU_RS14570	0.12	-1.3
3,257,145	-		PFLU_RS14570	0.12	+0.1
3,257,145	-		PFLU_RS14570	0.12	-2.0
3,257,145	-		PFLU_RS14570	0.12	+3.0
3,257,194	+		PFLU_RS14570	0.20	+0.4
3,257,194	+		PFLU_RS14570	0.20	-1.3
3,257,195	-		PFLU_RS14570	0.20	+1.7
3,257,251	+		PFLU_RS14570	0.30	+2.1
3,257,251	+		PFLU_RS14570	0.30	-0.9
3,257,251	+		PFLU_RS14570	0.30	+2.6
3,257,252	-		PFLU_RS14570	0.30	+0.1
3,257,284	+		PFLU_RS14570	0.36	-1.0
3,257,285	-		PFLU_RS14570	0.36	-0.5
3,257,359	+		PFLU_RS14570	0.49	-1.6
3,257,360	-		PFLU_RS14570	0.50	-0.7
3,257,360	-		PFLU_RS14570	0.50	+2.6
3,257,360	-		PFLU_RS14570	0.50	+0.9
3,257,360	-		PFLU_RS14570	0.50	+0.8
3,257,408	+		PFLU_RS14570	0.58	+3.1
3,257,408	+		PFLU_RS14570	0.58	+2.0
3,257,548	+		PFLU_RS14570	0.83	+1.4
3,257,548	+		PFLU_RS14570	0.83	+0.8
3,257,549	-		PFLU_RS14570	0.83	+1.1
3,257,549	-		PFLU_RS14570	0.83	-0.2
3,257,641	+				+0.4
3,257,641	+				+0.4
3,257,641	+				+1.9
3,257,641	+				+1.4
3,257,641	+				+4.2
3,257,641	+				+1.1
3,257,641	+				+1.0
3,257,642	-				+3.6
3,257,642	-				+2.1
3,257,642	-				+0.5
3,257,642	-				-0.2
3,257,642	-				+0.4
3,257,677	+				+0.7
3,257,677	+				-0.9
3,257,677	+				+1.1
3,257,677	+				-0.2
3,257,677	+				-2.3
3,257,677	+				-0.8
3,257,677	+				+0.7
3,257,677	+				+0.5
3,257,677	+				+1.5
3,257,678	-				-1.0
3,257,678	-				+0.5
3,257,678	-				-1.6
3,257,678	-				+1.2
3,257,678	-				+3.3
3,257,678	-				+0.4
3,257,681	+				+1.1
3,257,681	+				-2.3
3,257,681	+				+0.8
3,257,681	+				+0.0
3,257,682	-				+0.1
3,257,682	-				+0.2
3,257,682	-				-1.9
3,257,682	-				-1.5
3,257,682	-				+1.1
3,257,682	-				+4.1
3,257,682	-				+1.8
3,257,682	-				+1.1
3,257,682	-				-1.6
3,257,743	+				+0.8
3,257,743	+				+1.1
3,257,743	+				+4.7
3,257,770	+				+4.4
3,257,771	-				-1.2
3,257,808	-				-1.0
3,257,808	-				+2.1
3,257,808	-				+0.3
3,257,808	-				+0.5
3,257,808	-				+0.5
3,257,911	+				+2.1
3,257,920	+				-1.9
3,257,921	-				-1.9