Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08490 and PFLU_RS08495 are separated by 124 nucleotides PFLU_RS08495 and PFLU_RS08500 are separated by 103 nucleotides
PFLU_RS08490: PFLU_RS08490 - DEAD/DEAH box helicase, at 1,891,666 to 1,893,339
_RS08490
PFLU_RS08495: PFLU_RS08495 - dioxygenase, at 1,893,464 to 1,894,231
_RS08495
PFLU_RS08500: PFLU_RS08500 - thiopurine S-methyltransferase, at 1,894,335 to 1,894,991
_RS08500
Position (kb) 1893
1894
1895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1893.039 kb on + strand, within PFLU_RS08490 at 1893.039 kb on + strand, within PFLU_RS08490 at 1893.367 kb on + strand at 1893.368 kb on - strand at 1893.368 kb on - strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.477 kb on + strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.478 kb on - strand at 1893.555 kb on + strand, within PFLU_RS08495 at 1893.556 kb on - strand, within PFLU_RS08495 at 1893.619 kb on - strand, within PFLU_RS08495 at 1893.655 kb on + strand, within PFLU_RS08495 at 1893.655 kb on + strand, within PFLU_RS08495 at 1893.656 kb on - strand, within PFLU_RS08495 at 1893.830 kb on - strand, within PFLU_RS08495 at 1893.876 kb on + strand, within PFLU_RS08495 at 1893.876 kb on + strand, within PFLU_RS08495 at 1893.876 kb on + strand, within PFLU_RS08495 at 1893.876 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.929 kb on + strand, within PFLU_RS08495 at 1893.930 kb on - strand, within PFLU_RS08495 at 1893.930 kb on - strand, within PFLU_RS08495 at 1893.930 kb on - strand, within PFLU_RS08495 at 1894.213 kb on + strand at 1894.213 kb on + strand at 1894.213 kb on + strand at 1894.213 kb on + strand at 1894.214 kb on - strand at 1894.214 kb on - strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.231 kb on + strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.232 kb on - strand at 1894.285 kb on - strand at 1894.290 kb on + strand at 1894.290 kb on + strand at 1894.290 kb on + strand at 1894.291 kb on - strand at 1894.291 kb on - strand at 1894.295 kb on + strand at 1894.296 kb on - strand at 1894.296 kb on - strand at 1894.296 kb on - strand at 1894.302 kb on + strand at 1894.302 kb on + strand at 1894.344 kb on - strand at 1894.407 kb on + strand, within PFLU_RS08500 at 1894.408 kb on - strand, within PFLU_RS08500 at 1894.614 kb on + strand, within PFLU_RS08500 at 1894.615 kb on - strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.693 kb on + strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.694 kb on - strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.695 kb on + strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.696 kb on - strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.806 kb on + strand, within PFLU_RS08500 at 1894.807 kb on - strand, within PFLU_RS08500 at 1894.807 kb on - strand, within PFLU_RS08500 at 1894.807 kb on - strand, within PFLU_RS08500 at 1894.807 kb on - strand, within PFLU_RS08500 at 1894.858 kb on + strand, within PFLU_RS08500 at 1894.858 kb on + strand, within PFLU_RS08500 at 1894.858 kb on + strand, within PFLU_RS08500 at 1894.858 kb on + strand, within PFLU_RS08500 at 1894.858 kb on + strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.859 kb on - strand, within PFLU_RS08500 at 1894.982 kb on + strand at 1895.071 kb on + strand at 1895.071 kb on + strand at 1895.071 kb on + strand at 1895.071 kb on + strand at 1895.078 kb on + strand at 1895.078 kb on + strand at 1895.177 kb on + strand at 1895.177 kb on + strand at 1895.177 kb on + strand at 1895.177 kb on + strand at 1895.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride remove 1,893,039 + PFLU_RS08490 0.82 +2.5 1,893,039 + PFLU_RS08490 0.82 -0.4 1,893,367 + +1.3 1,893,368 - -1.3 1,893,368 - -1.3 1,893,477 + +0.7 1,893,477 + -1.5 1,893,477 + -1.4 1,893,477 + +1.4 1,893,477 + +0.0 1,893,477 + -0.9 1,893,477 + +1.3 1,893,477 + +1.5 1,893,477 + +1.1 1,893,477 + -1.2 1,893,477 + -0.5 1,893,478 - -0.8 1,893,478 - -2.3 1,893,478 - -0.7 1,893,478 - -0.3 1,893,478 - +0.8 1,893,478 - +0.6 1,893,478 - -0.7 1,893,555 + PFLU_RS08495 0.12 +0.2 1,893,556 - PFLU_RS08495 0.12 +1.4 1,893,619 - PFLU_RS08495 0.20 +0.1 1,893,655 + PFLU_RS08495 0.25 -1.9 1,893,655 + PFLU_RS08495 0.25 -0.3 1,893,656 - PFLU_RS08495 0.25 -0.5 1,893,830 - PFLU_RS08495 0.48 +2.4 1,893,876 + PFLU_RS08495 0.54 -1.0 1,893,876 + PFLU_RS08495 0.54 -0.7 1,893,876 + PFLU_RS08495 0.54 -1.8 1,893,876 + PFLU_RS08495 0.54 -0.3 1,893,929 + PFLU_RS08495 0.61 -0.5 1,893,929 + PFLU_RS08495 0.61 -0.0 1,893,929 + PFLU_RS08495 0.61 +0.7 1,893,929 + PFLU_RS08495 0.61 -1.0 1,893,929 + PFLU_RS08495 0.61 -1.0 1,893,929 + PFLU_RS08495 0.61 -1.1 1,893,929 + PFLU_RS08495 0.61 -0.2 1,893,930 - PFLU_RS08495 0.61 +0.9 1,893,930 - PFLU_RS08495 0.61 -0.5 1,893,930 - PFLU_RS08495 0.61 +3.0 1,894,213 + -1.0 1,894,213 + +1.3 1,894,213 + +0.9 1,894,213 + -0.2 1,894,214 - +1.5 1,894,214 - -0.3 1,894,231 + -1.4 1,894,231 + -0.4 1,894,231 + -0.5 1,894,231 + +0.3 1,894,231 + +2.1 1,894,231 + -0.5 1,894,231 + -1.1 1,894,231 + +0.6 1,894,231 + -0.1 1,894,231 + -2.0 1,894,231 + -0.7 1,894,231 + +0.8 1,894,231 + +3.1 1,894,231 + -1.7 1,894,231 + -1.0 1,894,231 + +1.0 1,894,231 + -0.3 1,894,231 + +1.0 1,894,231 + -2.3 1,894,231 + -0.5 1,894,231 + +1.6 1,894,231 + -0.3 1,894,231 + -2.0 1,894,231 + -2.9 1,894,231 + -0.0 1,894,231 + +0.8 1,894,231 + -1.3 1,894,231 + -1.5 1,894,231 + +0.6 1,894,231 + -0.2 1,894,231 + -0.2 1,894,231 + +0.6 1,894,231 + +3.0 1,894,231 + -0.9 1,894,231 + +1.3 1,894,231 + +0.9 1,894,231 + +1.3 1,894,231 + +1.4 1,894,232 - +1.3 1,894,232 - -0.3 1,894,232 - +1.9 1,894,232 - +0.9 1,894,232 - +1.3 1,894,232 - +0.1 1,894,232 - -0.5 1,894,232 - +2.4 1,894,232 - +0.7 1,894,232 - -1.2 1,894,232 - -0.1 1,894,232 - +0.7 1,894,232 - +1.1 1,894,232 - +1.3 1,894,232 - +0.2 1,894,232 - +2.1 1,894,232 - -2.3 1,894,232 - -1.7 1,894,232 - +2.3 1,894,232 - +0.6 1,894,232 - -1.4 1,894,232 - -1.9 1,894,285 - +2.9 1,894,290 + -1.5 1,894,290 + -0.5 1,894,290 + +1.0 1,894,291 - +0.1 1,894,291 - +1.5 1,894,295 + +3.0 1,894,296 - +2.5 1,894,296 - -1.0 1,894,296 - -0.4 1,894,302 + +0.3 1,894,302 + -0.5 1,894,344 - +0.6 1,894,407 + PFLU_RS08500 0.11 +0.6 1,894,408 - PFLU_RS08500 0.11 +0.6 1,894,614 + PFLU_RS08500 0.42 -1.0 1,894,615 - PFLU_RS08500 0.43 -2.7 1,894,693 + PFLU_RS08500 0.54 +1.0 1,894,693 + PFLU_RS08500 0.54 -0.0 1,894,693 + PFLU_RS08500 0.54 -1.0 1,894,693 + PFLU_RS08500 0.54 +0.4 1,894,693 + PFLU_RS08500 0.54 -0.0 1,894,693 + PFLU_RS08500 0.54 +1.0 1,894,693 + PFLU_RS08500 0.54 -0.3 1,894,693 + PFLU_RS08500 0.54 +0.2 1,894,693 + PFLU_RS08500 0.54 +1.6 1,894,693 + PFLU_RS08500 0.54 -0.0 1,894,693 + PFLU_RS08500 0.54 +1.0 1,894,694 - PFLU_RS08500 0.55 -1.0 1,894,694 - PFLU_RS08500 0.55 -0.6 1,894,694 - PFLU_RS08500 0.55 -1.2 1,894,694 - PFLU_RS08500 0.55 -0.4 1,894,694 - PFLU_RS08500 0.55 -2.5 1,894,694 - PFLU_RS08500 0.55 -0.0 1,894,694 - PFLU_RS08500 0.55 -2.1 1,894,694 - PFLU_RS08500 0.55 +0.5 1,894,694 - PFLU_RS08500 0.55 +1.5 1,894,694 - PFLU_RS08500 0.55 -0.5 1,894,694 - PFLU_RS08500 0.55 -1.5 1,894,695 + PFLU_RS08500 0.55 -1.7 1,894,695 + PFLU_RS08500 0.55 +1.8 1,894,695 + PFLU_RS08500 0.55 +0.7 1,894,695 + PFLU_RS08500 0.55 +0.1 1,894,695 + PFLU_RS08500 0.55 -1.3 1,894,695 + PFLU_RS08500 0.55 -1.3 1,894,695 + PFLU_RS08500 0.55 +1.9 1,894,695 + PFLU_RS08500 0.55 +0.6 1,894,695 + PFLU_RS08500 0.55 +1.6 1,894,695 + PFLU_RS08500 0.55 -0.1 1,894,695 + PFLU_RS08500 0.55 -0.5 1,894,695 + PFLU_RS08500 0.55 +0.4 1,894,695 + PFLU_RS08500 0.55 -0.0 1,894,695 + PFLU_RS08500 0.55 -2.0 1,894,695 + PFLU_RS08500 0.55 -0.7 1,894,695 + PFLU_RS08500 0.55 -1.4 1,894,695 + PFLU_RS08500 0.55 +1.4 1,894,695 + PFLU_RS08500 0.55 +3.6 1,894,695 + PFLU_RS08500 0.55 -1.2 1,894,696 - PFLU_RS08500 0.55 -2.0 1,894,696 - PFLU_RS08500 0.55 +1.3 1,894,696 - PFLU_RS08500 0.55 -0.0 1,894,696 - PFLU_RS08500 0.55 -2.2 1,894,696 - PFLU_RS08500 0.55 -0.7 1,894,696 - PFLU_RS08500 0.55 -1.2 1,894,696 - PFLU_RS08500 0.55 +0.3 1,894,696 - PFLU_RS08500 0.55 -0.5 1,894,696 - PFLU_RS08500 0.55 -1.9 1,894,696 - PFLU_RS08500 0.55 +0.5 1,894,696 - PFLU_RS08500 0.55 +1.7 1,894,696 - PFLU_RS08500 0.55 +0.5 1,894,696 - PFLU_RS08500 0.55 -2.3 1,894,696 - PFLU_RS08500 0.55 +0.8 1,894,696 - PFLU_RS08500 0.55 -0.3 1,894,696 - PFLU_RS08500 0.55 +1.4 1,894,696 - PFLU_RS08500 0.55 +1.7 1,894,806 + PFLU_RS08500 0.72 -2.1 1,894,806 + PFLU_RS08500 0.72 +1.7 1,894,806 + PFLU_RS08500 0.72 +1.4 1,894,806 + PFLU_RS08500 0.72 +1.0 1,894,806 + PFLU_RS08500 0.72 -1.6 1,894,806 + PFLU_RS08500 0.72 +0.3 1,894,807 - PFLU_RS08500 0.72 -0.1 1,894,807 - PFLU_RS08500 0.72 -1.4 1,894,807 - PFLU_RS08500 0.72 -1.9 1,894,807 - PFLU_RS08500 0.72 +0.4 1,894,858 + PFLU_RS08500 0.80 -0.5 1,894,858 + PFLU_RS08500 0.80 +0.8 1,894,858 + PFLU_RS08500 0.80 +0.9 1,894,858 + PFLU_RS08500 0.80 -1.0 1,894,858 + PFLU_RS08500 0.80 -3.1 1,894,859 - PFLU_RS08500 0.80 +2.3 1,894,859 - PFLU_RS08500 0.80 -2.0 1,894,859 - PFLU_RS08500 0.80 -1.5 1,894,859 - PFLU_RS08500 0.80 -1.2 1,894,859 - PFLU_RS08500 0.80 -2.7 1,894,859 - PFLU_RS08500 0.80 -0.8 1,894,859 - PFLU_RS08500 0.80 -0.2 1,894,859 - PFLU_RS08500 0.80 -0.0 1,894,982 + +1.3 1,895,071 + -2.8 1,895,071 + -1.5 1,895,071 + -1.2 1,895,071 + -1.0 1,895,078 + +1.4 1,895,078 + +0.7 1,895,177 + -0.7 1,895,177 + -1.6 1,895,177 + +3.9 1,895,177 + -1.5 1,895,177 + -1.2
Or see this region's nucleotide sequence