Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4281

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
4,983,760	+		Pf6N2E2_4280	0.78	-0.5
4,983,760	+		Pf6N2E2_4280	0.78	-0.4
4,983,760	+		Pf6N2E2_4280	0.78	-1.0
4,983,761	-		Pf6N2E2_4280	0.78	-0.7
4,983,761	-		Pf6N2E2_4280	0.78	-0.1
4,983,861	+		Pf6N2E2_4280	0.84	-0.1
4,983,861	+		Pf6N2E2_4280	0.84	-1.9
4,983,861	+		Pf6N2E2_4280	0.84	-0.3
4,983,862	-		Pf6N2E2_4280	0.84	-0.1
4,983,897	+		Pf6N2E2_4280	0.85	+0.3
4,983,897	+		Pf6N2E2_4280	0.85	+1.3
4,983,897	+		Pf6N2E2_4280	0.85	-0.0
4,983,897	+		Pf6N2E2_4280	0.85	-1.0
4,983,898	-		Pf6N2E2_4280	0.85	-1.7
4,983,898	-		Pf6N2E2_4280	0.85	-0.1
4,983,898	-		Pf6N2E2_4280	0.85	-0.3
4,983,898	-		Pf6N2E2_4280	0.85	+0.1
4,984,447	+				+0.4
4,984,449	+				+0.3
4,984,449	+				+0.6
4,984,449	+				+0.5
4,984,449	+				-0.1
4,984,449	+				+0.7
4,984,449	+				-0.2
4,984,449	+				+1.8
4,984,449	+				-0.3
4,984,449	+				-0.3
4,984,449	+				-0.4
4,984,449	+				-1.2
4,984,449	+				-0.1
4,984,449	+				-0.7
4,984,449	+				+0.9
4,984,449	+				+0.3
4,984,449	+				+0.3
4,984,449	+				+0.4
4,984,449	+				-0.3
4,984,449	+				+2.6
4,984,449	+				-0.4
4,984,450	-				+0.5
4,984,450	-				-0.5
4,984,450	-				+1.7
4,984,450	-				-1.4
4,984,450	-				+1.3
4,984,450	-				-1.2
4,984,450	-				-0.1
4,984,450	-				+0.3
4,984,450	-				+1.8
4,984,450	-				-2.0
4,984,450	-				-0.2
4,984,450	-				-0.8
4,984,450	-				-0.1
4,984,450	-				-1.0
4,984,450	-				+0.4
4,984,460	+				+0.7
4,984,460	+				-0.2
4,984,460	+				+0.2
4,984,596	+				-0.3
4,984,596	+				-0.1
4,984,635	-				-1.0
4,984,635	-				-0.2
4,984,692	+				+1.3
4,984,692	+				+1.8
4,984,693	-				+0.9
4,984,693	-				-0.1
4,984,693	-				-0.0
4,984,693	-				+1.3
4,984,758	+		Pf6N2E2_4281	0.10	-0.0
4,984,758	+		Pf6N2E2_4281	0.10	-0.4
4,984,758	+		Pf6N2E2_4281	0.10	-1.3
4,984,758	+		Pf6N2E2_4281	0.10	-1.1
4,984,758	+		Pf6N2E2_4281	0.10	-1.7
4,984,758	+		Pf6N2E2_4281	0.10	-1.3
4,984,758	+		Pf6N2E2_4281	0.10	-0.4
4,984,758	+		Pf6N2E2_4281	0.10	-0.6
4,984,759	-		Pf6N2E2_4281	0.10	-0.1
4,984,759	-		Pf6N2E2_4281	0.10	+0.1
4,984,759	-		Pf6N2E2_4281	0.10	-0.9
4,984,759	-		Pf6N2E2_4281	0.10	-0.8
4,984,759	-		Pf6N2E2_4281	0.10	-0.5
4,984,762	+		Pf6N2E2_4281	0.11	-0.3
4,984,762	+		Pf6N2E2_4281	0.11	-1.3
4,984,763	-		Pf6N2E2_4281	0.11	-1.0
4,984,763	-		Pf6N2E2_4281	0.11	-0.3
4,984,763	-		Pf6N2E2_4281	0.11	-0.4
4,984,790	-		Pf6N2E2_4281	0.14	-0.6
4,984,791	+		Pf6N2E2_4281	0.14	-0.6
4,984,791	+		Pf6N2E2_4281	0.14	-0.3
4,984,791	+		Pf6N2E2_4281	0.14	+0.7
4,984,791	+		Pf6N2E2_4281	0.14	-0.3
4,984,791	+		Pf6N2E2_4281	0.14	-0.8
4,984,792	-		Pf6N2E2_4281	0.15	-0.6
4,984,792	-		Pf6N2E2_4281	0.15	+0.4
4,984,792	-		Pf6N2E2_4281	0.15	+0.6
4,984,792	-		Pf6N2E2_4281	0.15	+0.3
4,984,792	-		Pf6N2E2_4281	0.15	+1.3
4,984,792	-		Pf6N2E2_4281	0.15	+0.7
4,984,792	-		Pf6N2E2_4281	0.15	-0.4
4,984,792	-		Pf6N2E2_4281	0.15	+0.3
4,984,792	-		Pf6N2E2_4281	0.15	-0.6
4,984,792	-		Pf6N2E2_4281	0.15	-1.6
4,984,792	-		Pf6N2E2_4281	0.15	-1.4
4,984,792	-		Pf6N2E2_4281	0.15	-0.7
4,984,798	-		Pf6N2E2_4281	0.15	-0.5
4,984,812	+		Pf6N2E2_4281	0.17	-0.6
4,984,813	-		Pf6N2E2_4281	0.17	-1.3
4,984,813	-		Pf6N2E2_4281	0.17	-1.6
4,985,040	+		Pf6N2E2_4281	0.46	-0.2
4,985,049	+		Pf6N2E2_4281	0.47	-0.3
4,985,049	+		Pf6N2E2_4281	0.47	+0.8
4,985,049	+		Pf6N2E2_4281	0.47	-0.2
4,985,049	+		Pf6N2E2_4281	0.47	-1.0
4,985,050	-		Pf6N2E2_4281	0.47	-0.7
4,985,050	-		Pf6N2E2_4281	0.47	-0.3
4,985,121	+		Pf6N2E2_4281	0.56	+0.1
4,985,121	+		Pf6N2E2_4281	0.56	-0.5
4,985,122	-		Pf6N2E2_4281	0.56	-0.3
4,985,122	-		Pf6N2E2_4281	0.56	-0.2
4,985,327	+		Pf6N2E2_4281	0.82	-0.4
4,985,327	+		Pf6N2E2_4281	0.82	+0.6
4,985,327	+		Pf6N2E2_4281	0.82	-1.5
4,985,328	-		Pf6N2E2_4281	0.82	+0.6
4,985,328	-		Pf6N2E2_4281	0.82	-0.3
4,985,328	-		Pf6N2E2_4281	0.82	+0.6
4,985,328	-		Pf6N2E2_4281	0.82	+0.4
4,985,328	-		Pf6N2E2_4281	0.82	-0.6
4,985,328	-		Pf6N2E2_4281	0.82	-0.4
4,985,648	+		Pf6N2E2_4282	0.17	-0.2
4,985,786	+		Pf6N2E2_4282	0.34	-0.5
4,985,816	+		Pf6N2E2_4282	0.38	+0.1
4,985,816	+		Pf6N2E2_4282	0.38	+0.2
4,985,817	-		Pf6N2E2_4282	0.38	+0.2
4,985,817	-		Pf6N2E2_4282	0.38	-0.0
4,985,868	-		Pf6N2E2_4282	0.44	+1.9
4,985,876	+		Pf6N2E2_4282	0.45	-1.7
4,985,876	+		Pf6N2E2_4282	0.45	-0.4
4,985,978	+		Pf6N2E2_4282	0.57	-0.1
4,985,978	+		Pf6N2E2_4282	0.57	-0.4
4,985,978	+		Pf6N2E2_4282	0.57	+0.6
4,985,979	-		Pf6N2E2_4282	0.58	+1.9
4,985,979	-		Pf6N2E2_4282	0.58	-0.1
4,985,979	-		Pf6N2E2_4282	0.58	+0.2
4,985,979	-		Pf6N2E2_4282	0.58	+0.4
4,985,979	-		Pf6N2E2_4282	0.58	+0.4
4,985,981	+		Pf6N2E2_4282	0.58	-0.9
4,985,981	+		Pf6N2E2_4282	0.58	-1.0
4,985,981	+		Pf6N2E2_4282	0.58	+0.4
4,985,982	-		Pf6N2E2_4282	0.58	-0.1
4,985,982	-		Pf6N2E2_4282	0.58	-0.2
4,986,079	+		Pf6N2E2_4282	0.70	-1.3
4,986,079	+		Pf6N2E2_4282	0.70	-1.1
4,986,080	-		Pf6N2E2_4282	0.70	-0.3
4,986,080	-		Pf6N2E2_4282	0.70	+0.5
4,986,200	+		Pf6N2E2_4282	0.84	+0.0
4,986,319	+				-0.5
4,986,319	+				-1.0
4,986,320	-				+0.1
4,986,320	-				+0.4
4,986,320	-				+0.4
4,986,320	-				+1.5
4,986,351	+				+0.3
4,986,352	-				-1.1
4,986,359	-				+0.8
4,986,359	-				-0.2
4,986,380	+				+0.2
4,986,427	+				-2.0
4,986,443	-				+1.2