Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3126

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
3,615,961	+		Pf6N2E2_3125	0.34	+0.6
3,615,961	+		Pf6N2E2_3125	0.34	-0.0
3,615,961	+		Pf6N2E2_3125	0.34	-0.5
3,615,962	-		Pf6N2E2_3125	0.35	+0.6
3,615,962	-		Pf6N2E2_3125	0.35	-0.5
3,615,962	-		Pf6N2E2_3125	0.35	-0.5
3,615,998	-		Pf6N2E2_3125	0.38	+0.1
3,616,579	-				+0.7
3,616,611	+				-0.7
3,616,611	+				+0.1
3,616,611	+				-1.0
3,616,612	-				-1.4
3,616,612	-				-0.9
3,616,612	-				-0.1
3,616,687	+				-0.3
3,616,687	+				+0.5
3,616,687	+				+0.9
3,616,687	+				+0.3
3,616,688	-				-0.1
3,616,713	+				-0.4
3,617,045	+		Pf6N2E2_3126	0.23	+0.1
3,617,045	+		Pf6N2E2_3126	0.23	-0.9
3,617,045	+		Pf6N2E2_3126	0.23	-1.0
3,617,046	-		Pf6N2E2_3126	0.23	+0.5
3,617,046	-		Pf6N2E2_3126	0.23	+0.1
3,617,046	-		Pf6N2E2_3126	0.23	-1.2
3,617,046	-		Pf6N2E2_3126	0.23	+1.0
3,617,173	+		Pf6N2E2_3126	0.32	-0.9
3,617,173	+		Pf6N2E2_3126	0.32	+0.2
3,617,226	+		Pf6N2E2_3126	0.36	+1.1
3,617,226	+		Pf6N2E2_3126	0.36	-0.1
3,617,226	+		Pf6N2E2_3126	0.36	-0.4
3,617,226	+		Pf6N2E2_3126	0.36	+0.3
3,617,226	+		Pf6N2E2_3126	0.36	-0.0
3,617,536	+		Pf6N2E2_3126	0.57	-1.2
3,617,536	+		Pf6N2E2_3126	0.57	-0.2
3,617,536	+		Pf6N2E2_3126	0.57	-0.2
3,617,536	+		Pf6N2E2_3126	0.57	-0.0
3,617,536	+		Pf6N2E2_3126	0.57	-1.1
3,617,537	-		Pf6N2E2_3126	0.57	+0.1
3,617,537	-		Pf6N2E2_3126	0.57	-0.6
3,617,537	-		Pf6N2E2_3126	0.57	-0.3
3,617,537	-		Pf6N2E2_3126	0.57	-0.4
3,617,537	-		Pf6N2E2_3126	0.57	+0.1
3,617,537	-		Pf6N2E2_3126	0.57	-0.1
3,617,537	-		Pf6N2E2_3126	0.57	-0.4
3,617,542	+		Pf6N2E2_3126	0.57	+0.5
3,617,543	-		Pf6N2E2_3126	0.57	-0.2
3,617,543	-		Pf6N2E2_3126	0.57	+0.6
3,617,545	+		Pf6N2E2_3126	0.58	-1.6
3,617,545	+		Pf6N2E2_3126	0.58	-2.4
3,617,545	+		Pf6N2E2_3126	0.58	-0.1
3,617,545	+		Pf6N2E2_3126	0.58	+0.2
3,617,545	+		Pf6N2E2_3126	0.58	-0.2
3,617,545	+		Pf6N2E2_3126	0.58	-0.4
3,617,546	-		Pf6N2E2_3126	0.58	+0.0
3,617,546	-		Pf6N2E2_3126	0.58	-1.7
3,617,546	-		Pf6N2E2_3126	0.58	-0.6
3,617,546	-		Pf6N2E2_3126	0.58	-0.5
3,617,584	+		Pf6N2E2_3126	0.60	-1.1
3,617,584	+		Pf6N2E2_3126	0.60	+1.5
3,617,584	+		Pf6N2E2_3126	0.60	-0.4
3,617,585	-		Pf6N2E2_3126	0.60	+0.1
3,617,800	+		Pf6N2E2_3126	0.75	+0.0
3,617,801	-		Pf6N2E2_3126	0.75	+0.9
3,617,801	-		Pf6N2E2_3126	0.75	+0.2
3,617,803	+		Pf6N2E2_3126	0.75	+1.0
3,617,803	+		Pf6N2E2_3126	0.75	-1.5
3,617,804	-		Pf6N2E2_3126	0.75	-0.1
3,618,004	+		Pf6N2E2_3126	0.89	-0.6
3,618,079	+				-0.5
3,618,115	+				+0.1
3,618,116	-				+0.9
3,618,116	-				+0.5
3,618,160	+				-1.5
3,618,160	+				-0.7
3,618,160	+				-0.4
3,618,160	+				+0.1
3,618,160	+				-0.5
3,618,160	+				+0.5
3,618,161	-				+0.1
3,618,161	-				-1.0
3,618,161	-				+0.9
3,618,161	-				-0.2
3,618,164	+				+1.0
3,618,164	+				-0.5
3,618,165	-				-0.4
3,618,165	-				+0.6
3,618,165	-				+0.1
3,618,165	-				-0.9
3,618,173	+				-0.9
3,618,173	+				-0.1
3,618,174	-				+1.5
3,618,174	-				-0.7
3,618,174	-				-0.3
3,618,178	+				-0.7
3,618,178	+				-1.9
3,618,178	+				-0.7
3,618,178	+				-0.5
3,618,179	-				+0.5
3,618,179	-				+0.2
3,618,181	+				-0.5
3,618,181	+				+1.5
3,618,181	+				-0.5
3,618,182	-				-0.5
3,618,182	-				-0.4
3,618,182	-				+0.2
3,618,182	-				+0.5
3,618,230	+				-0.7
3,618,231	-				-0.0
3,618,231	-				+0.2
3,618,234	+				-1.1
3,618,234	+				-1.1
3,618,234	+				-0.4
3,618,234	+				-1.4
3,618,234	+				+1.5
3,618,235	-				-0.4
3,618,235	-				-0.0
3,618,235	-				+0.2
3,618,235	-				-0.3
3,618,235	-				+0.1
3,618,257	-				+0.1
3,618,257	-				-1.2
3,618,272	+				+0.5
3,618,273	-				-0.2
3,618,389	-		Pf6N2E2_3127	0.12	-0.3
3,618,389	-		Pf6N2E2_3127	0.12	-0.1
3,618,418	+		Pf6N2E2_3127	0.14	+1.5
3,618,419	-		Pf6N2E2_3127	0.14	-0.4
3,618,419	-		Pf6N2E2_3127	0.14	-1.6
3,618,419	-		Pf6N2E2_3127	0.14	+0.3
3,618,419	-		Pf6N2E2_3127	0.14	+0.7
3,618,419	-		Pf6N2E2_3127	0.14	+0.5
3,618,649	+		Pf6N2E2_3127	0.34	+0.5
3,618,649	+		Pf6N2E2_3127	0.34	-2.4
3,618,649	+		Pf6N2E2_3127	0.34	-0.0
3,618,650	-		Pf6N2E2_3127	0.34	-0.2
3,618,650	-		Pf6N2E2_3127	0.34	-0.3
3,618,650	-		Pf6N2E2_3127	0.34	-0.1
3,618,709	+		Pf6N2E2_3127	0.40	+0.1
3,618,709	+		Pf6N2E2_3127	0.40	-0.4
3,618,709	+		Pf6N2E2_3127	0.40	+0.1
3,618,709	+		Pf6N2E2_3127	0.40	-0.1
3,618,710	-		Pf6N2E2_3127	0.40	+0.4
3,618,812	-		Pf6N2E2_3127	0.49	+0.5
3,618,812	-		Pf6N2E2_3127	0.49	-0.1
3,618,826	+		Pf6N2E2_3127	0.50	-0.0
3,618,826	+		Pf6N2E2_3127	0.50	-0.8
3,618,827	-		Pf6N2E2_3127	0.50	-1.6
3,618,847	+		Pf6N2E2_3127	0.52	+1.2
3,618,847	+		Pf6N2E2_3127	0.52	-1.7
3,618,847	+		Pf6N2E2_3127	0.52	-0.9
3,618,890	-		Pf6N2E2_3127	0.55	-0.9
3,618,910	+		Pf6N2E2_3127	0.57	-0.4
3,618,910	+		Pf6N2E2_3127	0.57	-0.9
3,618,910	+		Pf6N2E2_3127	0.57	-0.2
3,618,910	+		Pf6N2E2_3127	0.57	-0.3
3,618,910	+		Pf6N2E2_3127	0.57	+0.7
3,618,910	+		Pf6N2E2_3127	0.57	+0.5
3,618,911	-		Pf6N2E2_3127	0.57	+0.8
3,619,034	-		Pf6N2E2_3127	0.68	+0.5
3,619,034	-		Pf6N2E2_3127	0.68	-0.2
3,619,156	+		Pf6N2E2_3127	0.78	+1.5
3,619,156	+		Pf6N2E2_3127	0.78	-0.4