Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1781

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
2,105,323	-		Pf6N2E2_1780	0.63	-0.4
2,105,323	-		Pf6N2E2_1780	0.63	+0.3
2,105,366	+		Pf6N2E2_1780	0.65	-0.2
2,105,640	+		Pf6N2E2_1780	0.76	-0.2
2,105,641	-		Pf6N2E2_1780	0.76	+0.1
2,105,678	+		Pf6N2E2_1780	0.78	-1.7
2,105,679	-		Pf6N2E2_1780	0.78	+0.1
2,105,679	-		Pf6N2E2_1780	0.78	-0.1
2,105,679	-		Pf6N2E2_1780	0.78	+0.3
2,105,856	+		Pf6N2E2_1780	0.85	-0.2
2,105,868	-		Pf6N2E2_1780	0.86	+0.3
2,106,095	+				+1.5
2,106,096	-				+0.5
2,106,215	+				-0.1
2,106,215	+				-0.1
2,106,215	+				+2.2
2,106,230	+				-1.5
2,106,230	+				+1.1
2,106,230	+				-1.2
2,106,231	-				-0.3
2,106,258	+				+1.8
2,106,259	-				-0.9
2,106,293	-				+0.2
2,106,486	+		Pf6N2E2_1781	0.12	+0.4
2,106,623	+		Pf6N2E2_1781	0.18	-0.2
2,106,623	+		Pf6N2E2_1781	0.18	-0.6
2,106,623	+		Pf6N2E2_1781	0.18	-0.4
2,106,624	-		Pf6N2E2_1781	0.19	-0.9
2,106,624	-		Pf6N2E2_1781	0.19	-1.3
2,106,703	+		Pf6N2E2_1781	0.22	-0.5
2,106,975	-		Pf6N2E2_1781	0.35	-1.1
2,107,404	+		Pf6N2E2_1781	0.55	-0.1
2,107,891	-		Pf6N2E2_1781	0.78	-0.4
2,107,891	-		Pf6N2E2_1781	0.78	-0.8
2,107,891	-		Pf6N2E2_1781	0.78	-0.2
2,107,891	-		Pf6N2E2_1781	0.78	-0.4
2,108,221	-				-1.1
2,108,339	-				-0.1
2,108,631	+		Pf6N2E2_1782	0.81	-0.9
2,108,632	-		Pf6N2E2_1782	0.81	+0.8
2,108,632	-		Pf6N2E2_1782	0.81	-0.4
2,108,632	-		Pf6N2E2_1782	0.81	-1.5
2,108,727	-				-0.6
2,108,873	+		Pf6N2E2_1783	0.40	+0.1
2,108,942	-		Pf6N2E2_1783	0.59	+1.0
2,108,942	-		Pf6N2E2_1783	0.59	-0.4
2,109,107	-				+0.4
2,109,131	+				+0.5
2,109,131	+				-0.3
2,109,132	-				-0.7
2,109,132	-				-0.4
2,109,184	+				-0.1
2,109,184	+				-0.2
2,109,185	-				+0.1