Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26965

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,015,974	+		PFLU_RS26960	0.84	+0.0
6,015,974	+		PFLU_RS26960	0.84	+0.1
6,015,974	+		PFLU_RS26960	0.84	-1.6
6,015,974	+		PFLU_RS26960	0.84	+1.6
6,015,974	+		PFLU_RS26960	0.84	+0.8
6,015,974	+		PFLU_RS26960	0.84	+3.4
6,015,974	+		PFLU_RS26960	0.84	+2.1
6,015,974	+		PFLU_RS26960	0.84	-0.2
6,015,975	-		PFLU_RS26960	0.84	-0.1
6,015,975	-		PFLU_RS26960	0.84	+2.6
6,016,535	-				-2.3
6,016,586	+				-3.0
6,016,586	+				-0.6
6,016,586	+				-0.7
6,016,586	+				+3.2
6,016,586	+				-1.1
6,016,586	+				+1.1
6,016,587	-				-0.8
6,016,587	-				-2.4
6,016,587	-				-0.5
6,016,587	-				-2.2
6,016,587	-				+0.5
6,016,587	-				+0.4
6,016,589	+				+1.2
6,016,589	+				-0.6
6,016,589	+				-1.1
6,016,589	+				-1.0
6,016,589	+				-0.2
6,016,589	+				+1.9
6,016,589	+				+0.0
6,016,589	+				+0.0
6,016,589	+				-3.4
6,016,589	+				-0.5
6,016,589	+				+1.8
6,016,590	-				+0.5
6,016,590	-				+1.4
6,016,770	+				-0.7
6,016,770	+				-0.6
6,016,770	+				+2.0
6,016,771	-				+1.0
6,016,771	-				+1.6
6,016,771	-				+1.7
6,016,771	-				+1.9
6,016,771	-				-0.2
6,016,771	-				+0.9
6,016,793	-				-1.1
6,016,849	+				-0.8
6,016,849	+				-1.1
6,016,850	-				+2.5
6,016,872	+				-0.3
6,016,872	+				+0.4
6,016,872	+				-1.9
6,016,872	+				-0.0
6,016,873	-				+0.5
6,016,873	-				+0.8
6,016,873	-				-0.5
6,016,903	+				-0.8
6,016,904	-				-2.3
6,016,950	+				+1.4
6,016,950	+				+1.8
6,016,951	-				+3.1
6,016,951	-				+2.2
6,016,985	-		PFLU_RS26965	0.10	-1.0
6,017,049	+		PFLU_RS26965	0.13	+0.1
6,017,049	+		PFLU_RS26965	0.13	-1.6
6,017,049	+		PFLU_RS26965	0.13	-1.0
6,017,049	+		PFLU_RS26965	0.13	-0.6
6,017,049	+		PFLU_RS26965	0.13	-2.6
6,017,049	+		PFLU_RS26965	0.13	+1.0
6,017,049	+		PFLU_RS26965	0.13	-0.5
6,017,050	-		PFLU_RS26965	0.13	-0.6
6,017,050	-		PFLU_RS26965	0.13	-2.2
6,017,050	-		PFLU_RS26965	0.13	-0.4
6,017,050	-		PFLU_RS26965	0.13	+1.2
6,017,050	-		PFLU_RS26965	0.13	+0.7
6,017,050	-		PFLU_RS26965	0.13	+0.9
6,017,050	-		PFLU_RS26965	0.13	+2.0
6,017,127	+		PFLU_RS26965	0.17	+0.2
6,017,127	+		PFLU_RS26965	0.17	+0.2
6,017,127	+		PFLU_RS26965	0.17	-1.0
6,017,127	+		PFLU_RS26965	0.17	-0.8
6,017,127	+		PFLU_RS26965	0.17	-1.6
6,017,128	-		PFLU_RS26965	0.17	-1.0
6,017,154	+		PFLU_RS26965	0.18	-1.7
6,017,154	+		PFLU_RS26965	0.18	-1.6
6,017,155	-		PFLU_RS26965	0.18	-1.5
6,017,452	+		PFLU_RS26965	0.32	-2.0
6,017,671	+		PFLU_RS26965	0.43	-2.0
6,017,671	+		PFLU_RS26965	0.43	+1.9
6,017,671	+		PFLU_RS26965	0.43	+0.0
6,017,672	-		PFLU_RS26965	0.43	-1.6
6,017,672	-		PFLU_RS26965	0.43	-1.2
6,017,672	-		PFLU_RS26965	0.43	-0.6
6,017,787	+		PFLU_RS26965	0.48	-0.8
6,017,788	-		PFLU_RS26965	0.48	-1.5
6,017,788	-		PFLU_RS26965	0.48	-1.3
6,017,788	-		PFLU_RS26965	0.48	-1.1
6,017,863	+		PFLU_RS26965	0.52	-1.3
6,017,864	-		PFLU_RS26965	0.52	+0.7
6,017,864	-		PFLU_RS26965	0.52	-0.5
6,017,976	+		PFLU_RS26965	0.57	-0.6
6,017,976	+		PFLU_RS26965	0.57	+0.9
6,017,976	+		PFLU_RS26965	0.57	-1.0
6,018,148	+		PFLU_RS26965	0.65	-2.9
6,018,149	-		PFLU_RS26965	0.66	-0.8
6,018,240	+		PFLU_RS26965	0.70	-0.1
6,018,240	+		PFLU_RS26965	0.70	+0.5
6,018,240	+		PFLU_RS26965	0.70	-1.0
6,018,240	+		PFLU_RS26965	0.70	-1.9
6,018,240	+		PFLU_RS26965	0.70	+0.3
6,018,240	+		PFLU_RS26965	0.70	+0.7
6,018,240	+		PFLU_RS26965	0.70	+0.8
6,018,240	+		PFLU_RS26965	0.70	-0.2
6,018,240	+		PFLU_RS26965	0.70	-0.6
6,018,240	+		PFLU_RS26965	0.70	-2.2
6,018,240	+		PFLU_RS26965	0.70	-0.7
6,018,240	+		PFLU_RS26965	0.70	-2.0
6,018,240	+		PFLU_RS26965	0.70	-0.5
6,018,240	+		PFLU_RS26965	0.70	-2.2
6,018,240	+		PFLU_RS26965	0.70	-1.0
6,018,240	+		PFLU_RS26965	0.70	-2.5
6,018,240	+		PFLU_RS26965	0.70	+0.7
6,018,240	+		PFLU_RS26965	0.70	+0.5
6,018,241	-		PFLU_RS26965	0.70	-0.8
6,018,241	-		PFLU_RS26965	0.70	-1.6
6,018,241	-		PFLU_RS26965	0.70	-1.9
6,018,241	-		PFLU_RS26965	0.70	-2.3
6,018,241	-		PFLU_RS26965	0.70	-3.5
6,018,241	-		PFLU_RS26965	0.70	-3.0
6,018,241	-		PFLU_RS26965	0.70	-2.6
6,018,241	-		PFLU_RS26965	0.70	-1.2
6,018,241	-		PFLU_RS26965	0.70	+2.4
6,018,241	-		PFLU_RS26965	0.70	-2.0
6,018,241	-		PFLU_RS26965	0.70	-1.6
6,018,241	-		PFLU_RS26965	0.70	+1.4
6,018,241	-		PFLU_RS26965	0.70	-2.6
6,018,241	-		PFLU_RS26965	0.70	+0.4
6,018,342	+		PFLU_RS26965	0.75	+1.2
6,018,372	-		PFLU_RS26965	0.76	+1.2
6,018,383	+		PFLU_RS26965	0.77	+0.3
6,018,399	+		PFLU_RS26965	0.77	-1.6
6,018,399	+		PFLU_RS26965	0.77	-2.5
6,018,399	+		PFLU_RS26965	0.77	+1.8
6,018,399	+		PFLU_RS26965	0.77	-1.6
6,018,399	+		PFLU_RS26965	0.77	+0.4
6,018,399	+		PFLU_RS26965	0.77	+2.0
6,018,400	-		PFLU_RS26965	0.77	-2.1
6,018,400	-		PFLU_RS26965	0.77	+0.7
6,018,400	-		PFLU_RS26965	0.77	-2.9
6,018,439	-		PFLU_RS26965	0.79	-0.8
6,018,450	+		PFLU_RS26965	0.80	-2.3
6,018,450	+		PFLU_RS26965	0.80	-2.5
6,018,451	-		PFLU_RS26965	0.80	-2.3
6,018,451	-		PFLU_RS26965	0.80	-1.3
6,018,451	-		PFLU_RS26965	0.80	-0.2
6,018,451	-		PFLU_RS26965	0.80	+0.5
6,018,451	-		PFLU_RS26965	0.80	+2.7
6,018,518	-		PFLU_RS26965	0.83	+0.6
6,018,545	-		PFLU_RS26965	0.84	-1.6
6,018,851	+				+0.2
6,018,851	+				+1.5
6,018,851	+				+1.7
6,018,851	+				+0.2
6,018,851	+				-3.2
6,018,852	-				-1.6
6,018,852	-				-1.9
6,018,852	-				+1.9
6,018,863	+				-1.3
6,018,864	-				-0.8
6,018,864	-				-2.0
6,018,967	+				-1.2
6,018,967	+				-0.8
6,018,967	+				-1.3
6,018,967	+				+2.1
6,018,967	+				-2.3
6,018,967	+				-2.2
6,018,967	+				+1.6
6,018,967	+				+0.8
6,018,968	-				-2.2
6,018,968	-				+0.8
6,018,968	-				+0.0
6,018,968	-				-1.5
6,018,968	-				+2.8
6,018,968	-				-1.2
6,018,968	-				-1.6
6,019,065	+				+2.4
6,019,116	+		PFLU_RS31820	0.43	-0.7
6,019,117	-		PFLU_RS31820	0.44	-1.5
6,019,117	-		PFLU_RS31820	0.44	+1.4
6,019,117	-		PFLU_RS31820	0.44	+0.8
6,019,158	+		PFLU_RS31820	0.75	+1.8
6,019,158	+		PFLU_RS31820	0.75	+0.8
6,019,158	+		PFLU_RS31820	0.75	-1.0
6,019,158	+		PFLU_RS31820	0.75	-0.3
6,019,158	+		PFLU_RS31820	0.75	+0.7
6,019,159	-		PFLU_RS31820	0.76	-0.5
6,019,159	-		PFLU_RS31820	0.76	+1.6
6,019,207	+				-1.5
6,019,207	+				-1.3
6,019,207	+				-1.3
6,019,207	+				-0.1
6,019,207	+				-0.4
6,019,207	+				+1.0
6,019,207	+				-0.6
6,019,208	-				+2.1
6,019,208	-				-0.5
6,019,208	-				-1.3
6,019,208	-				+0.1
6,019,208	-				-1.0
6,019,208	-				+0.8
6,019,208	-				+2.8
6,019,208	-				+1.4
6,019,208	-				-0.6
6,019,315	+				-1.0
6,019,315	+				+0.0
6,019,315	+				-0.8
6,019,315	+				-0.2
6,019,315	+				+1.8
6,019,315	+				+0.9
6,019,315	+				+1.2
6,019,315	+				-1.0
6,019,315	+				-2.1
6,019,326	+				-0.5
6,019,326	+				-1.5
6,019,326	+				+0.4
6,019,327	-				-1.1
6,019,327	-				+0.0
6,019,357	+				+1.5
6,019,357	+				+0.5
6,019,358	-				+1.1
6,019,406	+				-0.3
6,019,406	+				+1.5
6,019,406	+				-1.2
6,019,406	+				-2.3
6,019,407	-				+0.9
6,019,482	-				+2.4
6,019,641	+		PFLU_RS26970	0.30	-0.3
6,019,641	+		PFLU_RS26970	0.30	-1.6
6,019,642	-		PFLU_RS26970	0.30	+1.7
6,019,642	-		PFLU_RS26970	0.30	-1.3
6,019,698	+		PFLU_RS26970	0.37	+0.4
6,019,752	+		PFLU_RS26970	0.44	+2.1
6,019,752	+		PFLU_RS26970	0.44	+1.5
6,019,753	-		PFLU_RS26970	0.44	+1.4
6,019,753	-		PFLU_RS26970	0.44	+0.2
6,019,766	+		PFLU_RS26970	0.46	-1.5
6,019,766	+		PFLU_RS26970	0.46	-1.0