Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08840

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
1,958,718	+		PFLU_RS08835	0.12	-2.0
1,958,718	+		PFLU_RS08835	0.12	-2.2
1,958,719	-		PFLU_RS08835	0.12	-2.1
1,958,730	-		PFLU_RS08835	0.14	-1.5
1,958,754	+		PFLU_RS08835	0.16	+2.3
1,958,754	+		PFLU_RS08835	0.16	-2.6
1,958,754	+		PFLU_RS08835	0.16	-1.5
1,958,754	+		PFLU_RS08835	0.16	-2.4
1,958,754	+		PFLU_RS08835	0.16	-1.7
1,958,754	+		PFLU_RS08835	0.16	+2.2
1,958,754	+		PFLU_RS08835	0.16	+1.8
1,958,755	-		PFLU_RS08835	0.16	+0.9
1,958,755	-		PFLU_RS08835	0.16	+1.8
1,958,755	-		PFLU_RS08835	0.16	+0.1
1,958,755	-		PFLU_RS08835	0.16	-1.7
1,958,755	-		PFLU_RS08835	0.16	-0.3
1,958,796	+		PFLU_RS08835	0.20	+0.5
1,958,796	+		PFLU_RS08835	0.20	+0.0
1,958,796	+		PFLU_RS08835	0.20	-2.7
1,958,796	+		PFLU_RS08835	0.20	+0.7
1,958,796	+		PFLU_RS08835	0.20	-1.6
1,958,797	-		PFLU_RS08835	0.20	-0.9
1,958,797	-		PFLU_RS08835	0.20	+1.7
1,958,797	-		PFLU_RS08835	0.20	+2.0
1,958,797	-		PFLU_RS08835	0.20	+1.9
1,958,797	-		PFLU_RS08835	0.20	+0.5
1,958,797	-		PFLU_RS08835	0.20	-0.5
1,958,805	+		PFLU_RS08835	0.21	+0.1
1,958,805	+		PFLU_RS08835	0.21	-2.0
1,958,805	+		PFLU_RS08835	0.21	+1.2
1,958,806	-		PFLU_RS08835	0.21	+1.5
1,958,806	-		PFLU_RS08835	0.21	-2.5
1,958,806	-		PFLU_RS08835	0.21	+0.2
1,958,895	+		PFLU_RS08835	0.30	-0.0
1,958,895	+		PFLU_RS08835	0.30	-1.4
1,958,896	-		PFLU_RS08835	0.30	-1.3
1,958,896	-		PFLU_RS08835	0.30	-0.4
1,958,896	-		PFLU_RS08835	0.30	+2.6
1,958,896	-		PFLU_RS08835	0.30	+1.3
1,959,099	+		PFLU_RS08835	0.50	-0.9
1,959,099	+		PFLU_RS08835	0.50	-0.9
1,959,099	+		PFLU_RS08835	0.50	+1.1
1,959,099	+		PFLU_RS08835	0.50	+2.3
1,959,100	-		PFLU_RS08835	0.50	-1.7
1,959,100	-		PFLU_RS08835	0.50	+0.1
1,959,100	-		PFLU_RS08835	0.50	-1.4
1,959,100	-		PFLU_RS08835	0.50	+1.1
1,959,100	-		PFLU_RS08835	0.50	-1.3
1,959,117	+		PFLU_RS08835	0.52	-0.9
1,959,117	+		PFLU_RS08835	0.52	-1.0
1,959,117	+		PFLU_RS08835	0.52	-1.5
1,959,117	+		PFLU_RS08835	0.52	-0.3
1,959,117	+		PFLU_RS08835	0.52	-3.2
1,959,117	+		PFLU_RS08835	0.52	+0.7
1,959,117	+		PFLU_RS08835	0.52	-1.0
1,959,117	+		PFLU_RS08835	0.52	-0.5
1,959,117	+		PFLU_RS08835	0.52	+2.2
1,959,117	+		PFLU_RS08835	0.52	+1.8
1,959,118	-		PFLU_RS08835	0.52	-2.7
1,959,118	-		PFLU_RS08835	0.52	+2.0
1,959,118	-		PFLU_RS08835	0.52	+1.2
1,959,118	-		PFLU_RS08835	0.52	-1.5
1,959,118	-		PFLU_RS08835	0.52	+1.3
1,959,118	-		PFLU_RS08835	0.52	-1.0
1,959,118	-		PFLU_RS08835	0.52	+2.1
1,959,118	-		PFLU_RS08835	0.52	-0.5
1,959,118	-		PFLU_RS08835	0.52	+1.1
1,959,118	-		PFLU_RS08835	0.52	+1.4
1,959,123	+		PFLU_RS08835	0.53	+0.1
1,959,124	-		PFLU_RS08835	0.53	+0.3
1,959,124	-		PFLU_RS08835	0.53	-1.9
1,959,230	-		PFLU_RS08835	0.63	+0.3
1,959,230	-		PFLU_RS08835	0.63	+1.9
1,959,230	-		PFLU_RS08835	0.63	-2.1
1,959,474	+		PFLU_RS08835	0.88	+2.1
1,959,474	+		PFLU_RS08835	0.88	-0.9
1,959,474	+		PFLU_RS08835	0.88	-0.5
1,959,475	-		PFLU_RS08835	0.88	+0.9
1,959,475	-		PFLU_RS08835	0.88	+1.8
1,959,483	+		PFLU_RS08835	0.88	+0.5
1,959,483	+		PFLU_RS08835	0.88	+2.0
1,959,483	+		PFLU_RS08835	0.88	-2.1
1,959,483	+		PFLU_RS08835	0.88	-1.0
1,959,483	+		PFLU_RS08835	0.88	-0.7
1,959,483	+		PFLU_RS08835	0.88	+3.1
1,959,483	+		PFLU_RS08835	0.88	-1.3
1,959,483	+		PFLU_RS08835	0.88	+0.7
1,959,483	+		PFLU_RS08835	0.88	+0.3
1,959,483	+		PFLU_RS08835	0.88	+0.9
1,959,483	+		PFLU_RS08835	0.88	-1.4
1,959,483	+		PFLU_RS08835	0.88	-1.5
1,959,483	+		PFLU_RS08835	0.88	-0.3
1,959,484	-		PFLU_RS08835	0.89	-2.3
1,959,484	-		PFLU_RS08835	0.89	-1.0
1,959,484	-		PFLU_RS08835	0.89	-1.2
1,959,484	-		PFLU_RS08835	0.89	-0.7
1,959,484	-		PFLU_RS08835	0.89	+0.1
1,959,484	-		PFLU_RS08835	0.89	+0.3
1,959,484	-		PFLU_RS08835	0.89	+1.2
1,959,484	-		PFLU_RS08835	0.89	-0.0
1,959,484	-		PFLU_RS08835	0.89	-0.4
1,959,484	-		PFLU_RS08835	0.89	+2.2
1,959,484	-		PFLU_RS08835	0.89	+1.3
1,959,497	+		PFLU_RS08835	0.90	+1.3
1,959,497	+		PFLU_RS08835	0.90	+0.1
1,959,497	+		PFLU_RS08835	0.90	-0.7
1,959,498	-				+0.5
1,959,498	-				+1.3
1,959,498	-				+0.3
1,959,504	+				-1.5
1,959,504	+				+1.5
1,959,504	+				+1.9
1,959,505	-				-2.0
1,959,505	-				+1.3
1,959,505	-				-1.0
1,959,505	-				+4.2
1,959,658	+				-2.0
1,959,659	-				-1.2
1,959,660	+				-0.3
1,959,660	+				-0.0
1,959,660	+				+2.6
1,959,660	+				+1.5
1,959,660	+				-0.6
1,959,660	+				+0.7
1,959,660	+				-0.7
1,959,660	+				-0.5
1,959,660	+				-1.5
1,959,660	+				-1.4
1,959,660	+				-0.5
1,959,660	+				+0.7
1,959,661	-				+2.0
1,959,661	-				-0.5
1,959,661	-				+1.3
1,959,661	-				+3.7
1,959,661	-				-1.3
1,959,661	-				+0.7
1,959,661	-				-1.8
1,959,661	-				+1.5
1,959,674	+				+1.5
1,959,674	+				+1.3
1,959,690	-				+1.1
1,959,757	+				+0.7
1,959,757	+				-1.3
1,959,757	+				-1.0
1,959,757	+				+1.6
1,959,758	-				-2.5
1,959,758	-				-0.0
1,959,844	+		PFLU_RS08840	0.17	+1.0
1,959,845	-		PFLU_RS08840	0.17	+0.7
1,959,969	+		PFLU_RS08840	0.32	+0.3
1,959,969	+		PFLU_RS08840	0.32	-2.3
1,959,969	+		PFLU_RS08840	0.32	-1.2
1,959,969	+		PFLU_RS08840	0.32	+2.3
1,959,969	+		PFLU_RS08840	0.32	+0.7
1,959,969	+		PFLU_RS08840	0.32	+0.3
1,959,970	-		PFLU_RS08840	0.32	+1.7
1,959,970	-		PFLU_RS08840	0.32	+2.3
1,959,970	-		PFLU_RS08840	0.32	+1.3
1,959,970	-		PFLU_RS08840	0.32	-2.6
1,959,970	-		PFLU_RS08840	0.32	-1.3
1,959,991	+		PFLU_RS08840	0.35	-1.2
1,959,992	-		PFLU_RS08840	0.35	-0.3
1,960,020	+		PFLU_RS08840	0.38	-1.4
1,960,020	+		PFLU_RS08840	0.38	-2.2
1,960,020	+		PFLU_RS08840	0.38	+0.7
1,960,020	+		PFLU_RS08840	0.38	-2.7
1,960,020	+		PFLU_RS08840	0.38	-0.3
1,960,020	+		PFLU_RS08840	0.38	-2.1
1,960,020	+		PFLU_RS08840	0.38	-1.6
1,960,020	+		PFLU_RS08840	0.38	-2.0
1,960,020	+		PFLU_RS08840	0.38	+1.8
1,960,021	-		PFLU_RS08840	0.38	-1.7
1,960,021	-		PFLU_RS08840	0.38	-0.5
1,960,021	-		PFLU_RS08840	0.38	-1.3
1,960,021	-		PFLU_RS08840	0.38	-0.5
1,960,021	-		PFLU_RS08840	0.38	-3.0
1,960,113	+		PFLU_RS08840	0.50	-2.1
1,960,114	-		PFLU_RS08840	0.50	-1.0
1,960,114	-		PFLU_RS08840	0.50	+2.6
1,960,114	-		PFLU_RS08840	0.50	-0.9
1,960,114	-		PFLU_RS08840	0.50	-1.6
1,960,114	-		PFLU_RS08840	0.50	-2.9
1,960,131	+		PFLU_RS08840	0.52	-0.5
1,960,131	+		PFLU_RS08840	0.52	-1.9
1,960,132	-		PFLU_RS08840	0.52	-1.8
1,960,194	+		PFLU_RS08840	0.59	-0.7
1,960,194	+		PFLU_RS08840	0.59	+1.4
1,960,195	-		PFLU_RS08840	0.60	-1.4
1,960,195	-		PFLU_RS08840	0.60	-0.7
1,960,195	-		PFLU_RS08840	0.60	+0.4
1,960,195	-		PFLU_RS08840	0.60	-1.4
1,960,209	+		PFLU_RS08840	0.61	+0.7
1,960,209	+		PFLU_RS08840	0.61	-1.7
1,960,209	+		PFLU_RS08840	0.61	+0.3
1,960,209	+		PFLU_RS08840	0.61	+0.3
1,960,209	+		PFLU_RS08840	0.61	+2.0
1,960,209	+		PFLU_RS08840	0.61	-1.3
1,960,209	+		PFLU_RS08840	0.61	-0.5
1,960,210	-		PFLU_RS08840	0.61	-1.3
1,960,210	-		PFLU_RS08840	0.61	-2.4
1,960,212	+		PFLU_RS08840	0.62	-1.5
1,960,212	+		PFLU_RS08840	0.62	-2.1
1,960,212	+		PFLU_RS08840	0.62	-1.0
1,960,213	-		PFLU_RS08840	0.62	-0.5
1,960,213	-		PFLU_RS08840	0.62	-1.4
1,960,213	-		PFLU_RS08840	0.62	-0.2
1,960,213	-		PFLU_RS08840	0.62	-2.1
1,960,213	-		PFLU_RS08840	0.62	+1.2
1,960,213	-		PFLU_RS08840	0.62	-0.7
1,960,213	-		PFLU_RS08840	0.62	-0.9
1,960,213	-		PFLU_RS08840	0.62	-0.3
1,960,261	-		PFLU_RS08840	0.68	-2.0
1,960,276	-		PFLU_RS08840	0.69	-0.0
1,960,276	-		PFLU_RS08840	0.69	-0.7
1,960,299	+		PFLU_RS08840	0.72	+0.7
1,960,299	+		PFLU_RS08840	0.72	+0.1
1,960,299	+		PFLU_RS08840	0.72	-0.3
1,960,299	+		PFLU_RS08840	0.72	-1.9
1,960,300	-		PFLU_RS08840	0.72	+0.6
1,960,300	-		PFLU_RS08840	0.72	-2.0
1,960,300	-		PFLU_RS08840	0.72	-2.2
1,960,353	+		PFLU_RS08840	0.79	-1.6
1,960,353	+		PFLU_RS08840	0.79	-1.5
1,960,353	+		PFLU_RS08840	0.79	-0.9
1,960,353	+		PFLU_RS08840	0.79	+0.7
1,960,371	+		PFLU_RS08840	0.81	-1.7
1,960,371	+		PFLU_RS08840	0.81	-2.3
1,960,371	+		PFLU_RS08840	0.81	+0.4
1,960,371	+		PFLU_RS08840	0.81	+2.9
1,960,371	+		PFLU_RS08840	0.81	-3.2
1,960,371	+		PFLU_RS08840	0.81	-0.7
1,960,371	+		PFLU_RS08840	0.81	-2.0
1,960,371	+		PFLU_RS08840	0.81	+0.7
1,960,371	+		PFLU_RS08840	0.81	-0.0
1,960,371	+		PFLU_RS08840	0.81	+0.4
1,960,371	+		PFLU_RS08840	0.81	-3.2
1,960,372	-		PFLU_RS08840	0.81	-2.5
1,960,372	-		PFLU_RS08840	0.81	-0.7
1,960,372	-		PFLU_RS08840	0.81	-0.5
1,960,372	-		PFLU_RS08840	0.81	-0.9
1,960,372	-		PFLU_RS08840	0.81	-1.2
1,960,372	-		PFLU_RS08840	0.81	-2.4
1,960,382	+		PFLU_RS08840	0.82	-1.2
1,960,382	+		PFLU_RS08840	0.82	+2.9
1,960,382	+		PFLU_RS08840	0.82	-1.2
1,960,382	+		PFLU_RS08840	0.82	-0.9
1,960,382	+		PFLU_RS08840	0.82	+2.3
1,960,382	+		PFLU_RS08840	0.82	-2.2
1,960,383	-		PFLU_RS08840	0.82	-1.3
1,960,383	-		PFLU_RS08840	0.82	-2.4
1,960,383	-		PFLU_RS08840	0.82	-1.7
1,960,383	-		PFLU_RS08840	0.82	-0.5
1,960,383	-		PFLU_RS08840	0.82	-2.0
1,960,383	-		PFLU_RS08840	0.82	-0.2
1,960,383	-		PFLU_RS08840	0.82	-1.5
1,960,383	-		PFLU_RS08840	0.82	-2.4
1,960,383	-		PFLU_RS08840	0.82	-2.0
1,960,494	+				+1.3
1,960,494	+				+1.8
1,960,495	-				+0.1
1,960,495	-				-2.5
1,960,495	-				+0.7
1,960,528	+				+2.1
1,960,529	-				-0.0
1,960,561	+				-0.3
1,960,561	+				-3.1
1,960,561	+				+1.3
1,960,688	+		PFLU_RS08845	0.15	-0.7
1,960,775	+		PFLU_RS08845	0.25	+0.9
1,960,775	+		PFLU_RS08845	0.25	+1.6
1,960,776	-		PFLU_RS08845	0.25	+2.3
1,960,776	-		PFLU_RS08845	0.25	-0.3
1,960,777	+		PFLU_RS08845	0.25	-1.3
1,960,777	+		PFLU_RS08845	0.25	-0.9
1,960,778	-		PFLU_RS08845	0.25	+4.0
1,960,778	-		PFLU_RS08845	0.25	-0.9
1,960,778	-		PFLU_RS08845	0.25	-2.3
1,960,778	-		PFLU_RS08845	0.25	+0.8
1,960,778	-		PFLU_RS08845	0.25	-0.7
1,960,863	+		PFLU_RS08845	0.35	-0.8
1,960,863	+		PFLU_RS08845	0.35	+0.3
1,961,032	-		PFLU_RS08845	0.54	-0.7
1,961,060	+		PFLU_RS08845	0.57	-2.2
1,961,061	-		PFLU_RS08845	0.57	-0.5
1,961,062	+		PFLU_RS08845	0.57	-0.5
1,961,062	+		PFLU_RS08845	0.57	-0.9
1,961,062	+		PFLU_RS08845	0.57	-1.6
1,961,062	+		PFLU_RS08845	0.57	-0.4
1,961,062	+		PFLU_RS08845	0.57	-0.7
1,961,063	-		PFLU_RS08845	0.57	-1.9
1,961,063	-		PFLU_RS08845	0.57	-1.7
1,961,063	-		PFLU_RS08845	0.57	-0.5
1,961,063	-		PFLU_RS08845	0.57	+1.7
1,961,063	-		PFLU_RS08845	0.57	-2.5
1,961,063	-		PFLU_RS08845	0.57	+1.1
1,961,063	-		PFLU_RS08845	0.57	-1.2
1,961,211	-		PFLU_RS08845	0.74	+1.9
1,961,212	+		PFLU_RS08845	0.74	-1.2
1,961,212	+		PFLU_RS08845	0.74	-0.3
1,961,212	+		PFLU_RS08845	0.74	+1.7
1,961,212	+		PFLU_RS08845	0.74	+0.7
1,961,212	+		PFLU_RS08845	0.74	+0.6
1,961,212	+		PFLU_RS08845	0.74	+0.5
1,961,212	+		PFLU_RS08845	0.74	+1.0
1,961,212	+		PFLU_RS08845	0.74	-2.0
1,961,212	+		PFLU_RS08845	0.74	-1.7
1,961,212	+		PFLU_RS08845	0.74	-0.3
1,961,212	+		PFLU_RS08845	0.74	-0.5
1,961,212	+		PFLU_RS08845	0.74	+0.1
1,961,212	+		PFLU_RS08845	0.74	-0.5
1,961,212	+		PFLU_RS08845	0.74	+1.0
1,961,212	+		PFLU_RS08845	0.74	-0.2
1,961,212	+		PFLU_RS08845	0.74	-1.0
1,961,212	+		PFLU_RS08845	0.74	-1.0
1,961,212	+		PFLU_RS08845	0.74	+1.8
1,961,212	+		PFLU_RS08845	0.74	+2.7
1,961,212	+		PFLU_RS08845	0.74	-1.3
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