Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05105

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
1,138,864	+		PFLU_RS05100	0.30	-1.3
1,138,865	-		PFLU_RS05100	0.30	-1.0
1,138,865	-		PFLU_RS05100	0.30	-1.8
1,138,865	-		PFLU_RS05100	0.30	-1.0
1,138,890	-		PFLU_RS05100	0.32	+0.3
1,139,084	-		PFLU_RS05100	0.46	-3.0
1,139,084	-		PFLU_RS05100	0.46	+0.9
1,139,084	-		PFLU_RS05100	0.46	+1.5
1,139,266	+		PFLU_RS05100	0.60	+1.1
1,139,266	+		PFLU_RS05100	0.60	+1.1
1,139,266	+		PFLU_RS05100	0.60	-0.3
1,139,266	+		PFLU_RS05100	0.60	-1.5
1,139,266	+		PFLU_RS05100	0.60	+0.3
1,139,266	+		PFLU_RS05100	0.60	+0.7
1,139,266	+		PFLU_RS05100	0.60	+1.3
1,139,267	-		PFLU_RS05100	0.60	-0.5
1,139,267	-		PFLU_RS05100	0.60	+1.6
1,139,267	-		PFLU_RS05100	0.60	-1.4
1,139,267	-		PFLU_RS05100	0.60	+0.3
1,139,267	-		PFLU_RS05100	0.60	-1.3
1,139,267	-		PFLU_RS05100	0.60	+3.0
1,139,491	+		PFLU_RS05100	0.76	-1.3
1,139,492	-		PFLU_RS05100	0.76	-1.7
1,139,492	-		PFLU_RS05100	0.76	+0.3
1,139,572	+		PFLU_RS05100	0.82	+0.2
1,139,573	-		PFLU_RS05100	0.82	-2.8
1,139,585	+		PFLU_RS05100	0.83	+0.3
1,139,585	+		PFLU_RS05100	0.83	+2.3
1,139,585	+		PFLU_RS05100	0.83	+0.8
1,139,585	+		PFLU_RS05100	0.83	+2.9
1,139,586	-		PFLU_RS05100	0.83	-1.4
1,139,586	-		PFLU_RS05100	0.83	-1.1
1,139,660	+		PFLU_RS05100	0.88	+1.7
1,139,660	+		PFLU_RS05100	0.88	+1.7
1,139,660	+		PFLU_RS05100	0.88	-1.7
1,139,660	+		PFLU_RS05100	0.88	+2.0
1,139,660	+		PFLU_RS05100	0.88	+0.3
1,139,660	+		PFLU_RS05100	0.88	+1.7
1,139,660	+		PFLU_RS05100	0.88	-0.2
1,139,660	+		PFLU_RS05100	0.88	-0.0
1,139,660	+		PFLU_RS05100	0.88	-0.9
1,139,660	+		PFLU_RS05100	0.88	+2.8
1,139,660	+		PFLU_RS05100	0.88	+0.4
1,139,660	+		PFLU_RS05100	0.88	+3.5
1,139,660	+		PFLU_RS05100	0.88	-1.5
1,139,660	+		PFLU_RS05100	0.88	-2.5
1,139,660	+		PFLU_RS05100	0.88	-0.1
1,139,660	+		PFLU_RS05100	0.88	+0.1
1,139,661	-		PFLU_RS05100	0.88	+2.6
1,139,661	-		PFLU_RS05100	0.88	+2.3
1,139,661	-		PFLU_RS05100	0.88	-0.7
1,139,661	-		PFLU_RS05100	0.88	+0.8
1,139,661	-		PFLU_RS05100	0.88	-1.1
1,139,661	-		PFLU_RS05100	0.88	+2.1
1,139,661	-		PFLU_RS05100	0.88	+0.1
1,139,661	-		PFLU_RS05100	0.88	-0.1
1,139,677	-		PFLU_RS05100	0.89	-0.1
1,139,677	-		PFLU_RS05100	0.89	-3.1
1,139,740	-				-1.0
1,139,794	-				-1.7
1,139,995	-		PFLU_RS05105	0.17	-2.3
1,139,995	-		PFLU_RS05105	0.17	+3.0
1,139,995	-		PFLU_RS05105	0.17	-1.5
1,140,015	+		PFLU_RS05105	0.19	-0.6
1,140,015	+		PFLU_RS05105	0.19	+0.2
1,140,016	-		PFLU_RS05105	0.19	-2.1
1,140,016	-		PFLU_RS05105	0.19	-1.8
1,140,281	+		PFLU_RS05105	0.52	-3.2
1,140,282	-		PFLU_RS05105	0.52	-2.4
1,140,282	-		PFLU_RS05105	0.52	+0.0
1,140,320	-		PFLU_RS05105	0.57	-2.3
1,140,691	+				+0.5
1,140,742	+				-1.3
1,140,742	+				+0.0
1,140,742	+				+3.1
1,140,742	+				-1.8
1,140,742	+				-0.5
1,140,742	+				+0.8
1,140,742	+				-2.4
1,140,742	+				-1.8
1,140,742	+				+0.6
1,140,742	+				-0.3
1,140,742	+				-1.0
1,140,742	+				+0.3
1,140,742	+				+2.1
1,140,742	+				-2.4
1,140,742	+				-1.6
1,140,742	+				-1.8
1,140,742	+				-1.5
1,140,742	+				-1.0
1,140,742	+				+0.9
1,140,742	+				+0.3
1,140,742	+				+0.7
1,140,743	-				-2.5
1,140,743	-				-3.2
1,140,743	-				+1.3
1,140,743	-				-0.3
1,140,743	-				+1.5
1,140,743	-				+0.6
1,140,743	-				+1.1
1,140,743	-				-1.0
1,140,743	-				+0.9
1,140,743	-				+1.0
1,140,743	-				-0.8
1,140,743	-				-1.1
1,140,743	-				+0.7
1,140,743	-				-1.1
1,140,743	-				-0.1
1,140,743	-				-1.0
1,140,743	-				+0.7
1,140,743	-				-1.1
1,140,743	-				+0.9
1,140,743	-				+0.0
1,140,743	-				-1.3
1,140,743	-				+0.9
1,140,743	-				+0.6
1,140,743	-				-3.4
1,140,773	+				+0.7
1,140,783	+				-1.9
1,140,783	+				+0.0
1,140,783	+				-0.2
1,140,810	+				+1.8
1,140,810	+				-0.7
1,140,810	+				+1.5
1,140,810	+				-1.8
1,140,810	+				-3.0
1,140,811	-				-1.9
1,140,811	-				-0.5
1,140,811	-				-2.4
1,140,811	-				-1.0
1,140,811	-				-2.5
1,140,811	-				-1.9
1,140,811	-				+1.8
1,140,811	-				+2.1
1,140,811	-				-0.4
1,140,812	+				-1.1
1,140,812	+				-0.7
1,140,812	+				-1.7
1,140,812	+				+0.7
1,140,812	+				-3.0
1,140,812	+				+0.6
1,140,812	+				-0.5
1,140,812	+				+1.9
1,140,812	+				-1.1
1,140,812	+				+1.0
1,140,812	+				+0.8
1,140,813	-				-2.3
1,140,813	-				-0.7
1,140,813	-				+0.8
1,140,813	-				+4.2
1,140,813	-				+0.0
1,140,940	+				-1.3
1,140,940	+				+3.2
1,140,940	+				-2.4
1,140,941	-				-1.2
1,140,941	-				-0.8
1,140,941	-				-2.9
1,140,941	-				+1.6
1,140,977	+		PFLU_RS05110	0.12	-0.3
1,140,978	-		PFLU_RS05110	0.12	-1.7
1,141,043	+		PFLU_RS05110	0.19	+0.1
1,141,043	+		PFLU_RS05110	0.19	-0.5
1,141,043	+		PFLU_RS05110	0.19	+0.5
1,141,043	+		PFLU_RS05110	0.19	-0.2
1,141,043	+		PFLU_RS05110	0.19	-2.0
1,141,043	+		PFLU_RS05110	0.19	-2.5
1,141,043	+		PFLU_RS05110	0.19	-1.8
1,141,043	+		PFLU_RS05110	0.19	+1.0
1,141,043	+		PFLU_RS05110	0.19	+1.7
1,141,043	+		PFLU_RS05110	0.19	-0.8
1,141,043	+		PFLU_RS05110	0.19	+2.7
1,141,043	+		PFLU_RS05110	0.19	-0.9
1,141,043	+		PFLU_RS05110	0.19	-1.2
1,141,043	+		PFLU_RS05110	0.19	-0.5
1,141,043	+		PFLU_RS05110	0.19	-1.5
1,141,043	+		PFLU_RS05110	0.19	-2.5
1,141,044	-		PFLU_RS05110	0.19	-2.6
1,141,044	-		PFLU_RS05110	0.19	-0.9
1,141,044	-		PFLU_RS05110	0.19	-1.1
1,141,044	-		PFLU_RS05110	0.19	+2.3
1,141,044	-		PFLU_RS05110	0.19	+2.2
1,141,044	-		PFLU_RS05110	0.19	-2.5
1,141,044	-		PFLU_RS05110	0.19	-2.5
1,141,044	-		PFLU_RS05110	0.19	+1.1
1,141,044	-		PFLU_RS05110	0.19	-2.2
1,141,044	-		PFLU_RS05110	0.19	+1.5
1,141,044	-		PFLU_RS05110	0.19	-0.3
1,141,044	-		PFLU_RS05110	0.19	+0.3
1,141,150	+		PFLU_RS05110	0.29	+1.6
1,141,151	-		PFLU_RS05110	0.29	+1.1
1,141,172	+		PFLU_RS05110	0.31	-2.4
1,141,172	+		PFLU_RS05110	0.31	+1.7
1,141,172	+		PFLU_RS05110	0.31	-0.3
1,141,172	+		PFLU_RS05110	0.31	+0.5
1,141,172	+		PFLU_RS05110	0.31	-1.6
1,141,172	+		PFLU_RS05110	0.31	-1.5
1,141,172	+		PFLU_RS05110	0.31	+2.2
1,141,172	+		PFLU_RS05110	0.31	-1.8
1,141,172	+		PFLU_RS05110	0.31	-0.4
1,141,172	+		PFLU_RS05110	0.31	-1.7
1,141,173	-		PFLU_RS05110	0.32	+1.0
1,141,173	-		PFLU_RS05110	0.32	+2.9
1,141,173	-		PFLU_RS05110	0.32	-0.3
1,141,173	-		PFLU_RS05110	0.32	+1.2
1,141,344	+		PFLU_RS05110	0.48	-0.2
1,141,344	+		PFLU_RS05110	0.48	-1.4
1,141,344	+		PFLU_RS05110	0.48	-0.3
1,141,344	+		PFLU_RS05110	0.48	+2.0
1,141,344	+		PFLU_RS05110	0.48	+1.7
1,141,344	+		PFLU_RS05110	0.48	-2.4
1,141,344	+		PFLU_RS05110	0.48	-0.0
1,141,344	+		PFLU_RS05110	0.48	-1.1
1,141,344	+		PFLU_RS05110	0.48	+1.5
1,141,344	+		PFLU_RS05110	0.48	+2.3
1,141,344	+		PFLU_RS05110	0.48	+0.2
1,141,344	+		PFLU_RS05110	0.48	+1.3
1,141,344	+		PFLU_RS05110	0.48	-1.7
1,141,344	+		PFLU_RS05110	0.48	-1.8
1,141,345	-		PFLU_RS05110	0.48	+0.2
1,141,345	-		PFLU_RS05110	0.48	-1.6
1,141,345	-		PFLU_RS05110	0.48	-0.2
1,141,345	-		PFLU_RS05110	0.48	-0.7
1,141,345	-		PFLU_RS05110	0.48	+0.1
1,141,345	-		PFLU_RS05110	0.48	-0.6
1,141,345	-		PFLU_RS05110	0.48	+1.9
1,141,345	-		PFLU_RS05110	0.48	+1.9