Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02965

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02955 and PFLU_RS02960 are separated by 568 nucleotidesPFLU_RS02960 and PFLU_RS02965 are separated by 119 nucleotidesPFLU_RS02965 and PFLU_RS02970 overlap by 4 nucleotides PFLU_RS02955: PFLU_RS02955 - DUF2946 domain-containing protein, at 681,319 to 681,714 _RS02955 PFLU_RS02960: PFLU_RS02960 - hypothetical protein, at 682,283 to 682,531 _RS02960 PFLU_RS02965: PFLU_RS02965 - cobalt-precorrin-6A reductase, at 682,651 to 683,370 _RS02965 PFLU_RS02970: PFLU_RS02970 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 683,367 to 684,572 _RS02970 Position (kb) 682 683 684Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 681.729 kb on - strandat 681.729 kb on - strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.751 kb on - strandat 681.751 kb on - strandat 681.754 kb on + strandat 681.754 kb on + strandat 681.755 kb on - strandat 681.772 kb on + strandat 681.772 kb on + strandat 681.772 kb on + strandat 681.773 kb on - strandat 681.773 kb on - strandat 681.773 kb on - strandat 681.773 kb on - strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.777 kb on - strandat 681.777 kb on - strandat 681.777 kb on - strandat 681.777 kb on - strandat 681.823 kb on - strandat 681.982 kb on + strandat 681.983 kb on - strandat 682.013 kb on + strandat 682.014 kb on - strandat 682.014 kb on - strandat 682.025 kb on + strandat 682.026 kb on - strandat 682.041 kb on + strandat 682.041 kb on + strandat 682.042 kb on - strandat 682.042 kb on - strandat 682.050 kb on + strandat 682.050 kb on + strandat 682.050 kb on + strandat 682.051 kb on - strandat 682.051 kb on - strandat 682.136 kb on - strandat 682.136 kb on - strandat 682.149 kb on - strandat 682.168 kb on + strandat 682.217 kb on - strandat 682.217 kb on - strandat 682.217 kb on - strandat 682.264 kb on + strandat 682.264 kb on + strandat 682.264 kb on + strandat 682.264 kb on + strandat 682.265 kb on - strandat 682.265 kb on - strandat 682.270 kb on - strandat 682.270 kb on - strandat 682.270 kb on - strandat 682.270 kb on - strandat 682.270 kb on - strandat 682.543 kb on + strandat 682.543 kb on + strandat 682.544 kb on - strandat 682.572 kb on - strandat 682.586 kb on + strandat 682.586 kb on + strandat 682.586 kb on + strandat 682.586 kb on + strandat 682.586 kb on + strandat 682.586 kb on + strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.587 kb on - strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.588 kb on + strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.589 kb on - strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.605 kb on + strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.606 kb on - strandat 682.636 kb on + strandat 682.636 kb on + strandat 682.636 kb on + strandat 682.636 kb on + strandat 682.653 kb on - strandat 682.672 kb on + strandat 682.672 kb on + strandat 682.672 kb on + strandat 682.672 kb on + strandat 682.672 kb on + strandat 682.673 kb on - strandat 682.673 kb on - strandat 682.673 kb on - strandat 682.689 kb on + strandat 682.689 kb on + strandat 682.689 kb on + strandat 682.690 kb on - strandat 682.791 kb on + strand, within PFLU_RS02965at 682.792 kb on - strand, within PFLU_RS02965at 682.990 kb on + strand, within PFLU_RS02965at 682.990 kb on + strand, within PFLU_RS02965at 682.991 kb on - strand, within PFLU_RS02965at 682.991 kb on - strand, within PFLU_RS02965at 683.157 kb on - strand, within PFLU_RS02965at 683.157 kb on - strand, within PFLU_RS02965at 683.184 kb on + strand, within PFLU_RS02965at 683.184 kb on + strand, within PFLU_RS02965at 683.185 kb on - strand, within PFLU_RS02965at 683.185 kb on - strand, within PFLU_RS02965at 683.185 kb on - strand, within PFLU_RS02965at 683.185 kb on - strand, within PFLU_RS02965at 683.232 kb on - strand, within PFLU_RS02965at 683.292 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.294 kb on + strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.295 kb on - strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.298 kb on + strand, within PFLU_RS02965at 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.299 kb on - strandat 683.316 kb on + strandat 683.317 kb on - strandat 683.317 kb on - strandat 683.317 kb on - strandat 683.317 kb on - strandat 683.396 kb on + strandat 683.396 kb on + strandat 683.397 kb on - strandat 683.397 kb on - strandat 683.420 kb on + strandat 683.420 kb on + strandat 683.420 kb on + strandat 683.421 kb on - strandat 683.421 kb on - strandat 683.421 kb on - strandat 683.421 kb on - strandat 683.556 kb on + strand, within PFLU_RS02970at 683.556 kb on + strand, within PFLU_RS02970at 683.556 kb on + strand, within PFLU_RS02970at 683.556 kb on + strand, within PFLU_RS02970at 683.556 kb on + strand, within PFLU_RS02970at 683.556 kb on + strand, within PFLU_RS02970at 683.557 kb on - strand, within PFLU_RS02970at 683.573 kb on + strand, within PFLU_RS02970at 683.573 kb on + strand, within PFLU_RS02970at 683.573 kb on + strand, within PFLU_RS02970at 683.573 kb on + strand, within PFLU_RS02970at 683.574 kb on - strand, within PFLU_RS02970at 683.574 kb on - strand, within PFLU_RS02970at 683.897 kb on + strand, within PFLU_RS02970at 683.897 kb on + strand, within PFLU_RS02970at 683.897 kb on + strand, within PFLU_RS02970at 683.898 kb on - strand, within PFLU_RS02970at 683.898 kb on - strand, within PFLU_RS02970at 683.942 kb on + strand, within PFLU_RS02970at 684.096 kb on + strand, within PFLU_RS02970at 684.096 kb on + strand, within PFLU_RS02970at 684.097 kb on - strand, within PFLU_RS02970at 684.331 kb on + strand, within PFLU_RS02970at 684.331 kb on + strand, within PFLU_RS02970at 684.332 kb on - strand, within PFLU_RS02970at 684.332 kb on - strand, within PFLU_RS02970at 684.332 kb on - strand, within PFLU_RS02970at 684.332 kb on - strand, within PFLU_RS02970

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
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681,729 - +2.6
681,729 - +1.3
681,750 + +2.4
681,750 + +0.2
681,750 + -0.4
681,750 + -0.5
681,750 + +1.1
681,750 + -2.3
681,751 - -1.1
681,751 - +0.4
681,754 + +0.2
681,754 + -0.6
681,755 - -0.8
681,772 + -1.0
681,772 + -0.1
681,772 + -2.7
681,773 - -2.6
681,773 - +1.0
681,773 - +0.8
681,773 - -0.1
681,776 + +2.7
681,776 + +0.0
681,776 + +0.1
681,776 + +0.3
681,776 + -1.3
681,776 + -0.3
681,777 - -2.2
681,777 - -0.1
681,777 - +2.5
681,777 - -1.4
681,823 - +2.4
681,982 + +1.6
681,983 - +0.6
682,013 + -0.6
682,014 - +1.2
682,014 - +4.3
682,025 + -2.3
682,026 - +0.6
682,041 + +1.4
682,041 + +1.8
682,042 - -0.2
682,042 - +0.5
682,050 + +0.5
682,050 + +0.3
682,050 + -0.4
682,051 - +0.3
682,051 - +1.4
682,136 - +0.6
682,136 - -0.4
682,149 - +0.0
682,168 + -1.1
682,217 - -1.6
682,217 - -2.0
682,217 - -0.1
682,264 + -1.4
682,264 + -1.9
682,264 + +2.9
682,264 + -2.0
682,265 - +0.1
682,265 - +2.4
682,270 - +1.4
682,270 - +1.2
682,270 - +0.2
682,270 - +2.5
682,270 - -1.8
682,543 + -0.4
682,543 + -1.2
682,544 - +0.6
682,572 - +2.4
682,586 + -1.3
682,586 + -0.4
682,586 + -1.3
682,586 + +3.2
682,586 + -1.6
682,586 + -2.2
682,587 - -2.5
682,587 - -0.7
682,587 - -1.0
682,587 - +0.4
682,587 - -1.5
682,587 - +1.2
682,587 - -1.4
682,588 + +0.5
682,588 + +1.0
682,588 + -1.5
682,588 + -1.2
682,588 + -2.6
682,588 + +2.5
682,588 + -2.1
682,588 + -0.2
682,588 + -2.8
682,588 + +2.4
682,588 + -0.2
682,588 + -2.8
682,588 + -0.4
682,588 + +0.8
682,588 + -0.6
682,588 + -3.3
682,588 + +1.2
682,588 + -0.2
682,588 + -2.0
682,588 + -0.8
682,588 + -1.5
682,588 + +0.8
682,588 + -1.9
682,589 - +0.6
682,589 - -0.6
682,589 - -2.5
682,589 - -0.8
682,589 - +1.4
682,589 - -0.4
682,589 - +1.6
682,589 - -2.4
682,589 - -1.0
682,589 - +4.2
682,589 - -0.6
682,589 - -2.5
682,589 - +0.4
682,589 - -0.8
682,589 - -0.3
682,589 - -0.6
682,589 - +1.8
682,589 - +0.4
682,589 - +2.0
682,589 - +0.4
682,589 - +1.5
682,589 - +1.8
682,589 - +0.7
682,589 - -1.0
682,589 - +1.2
682,589 - +0.9
682,605 + -1.4
682,605 + +0.9
682,605 + +0.8
682,605 + -2.3
682,605 + +2.4
682,605 + +1.8
682,605 + -0.2
682,605 + +5.7
682,606 - +0.8
682,606 - -1.2
682,606 - -1.1
682,606 - +0.8
682,606 - -2.1
682,606 - -2.3
682,606 - -3.1
682,606 - +0.9
682,636 + -0.3
682,636 + +0.0
682,636 + +2.9
682,636 + +0.4
682,653 - +1.0
682,672 + -1.0
682,672 + +1.1
682,672 + -0.8
682,672 + -0.2
682,672 + -1.9
682,673 - -1.1
682,673 - -1.0
682,673 - -2.1
682,689 + +0.0
682,689 + +0.4
682,689 + -1.9
682,690 - -0.6
682,791 + PFLU_RS02965 0.19 -0.8
682,792 - PFLU_RS02965 0.20 -2.0
682,990 + PFLU_RS02965 0.47 +0.0
682,990 + PFLU_RS02965 0.47 -1.6
682,991 - PFLU_RS02965 0.47 -1.5
682,991 - PFLU_RS02965 0.47 -1.5
683,157 - PFLU_RS02965 0.70 -0.8
683,157 - PFLU_RS02965 0.70 -0.4
683,184 + PFLU_RS02965 0.74 -1.8
683,184 + PFLU_RS02965 0.74 -2.9
683,185 - PFLU_RS02965 0.74 -2.0
683,185 - PFLU_RS02965 0.74 +2.4
683,185 - PFLU_RS02965 0.74 +0.8
683,185 - PFLU_RS02965 0.74 -1.4
683,232 - PFLU_RS02965 0.81 +0.0
683,292 + PFLU_RS02965 0.89 -0.2
683,294 + PFLU_RS02965 0.89 -1.4
683,294 + PFLU_RS02965 0.89 -0.8
683,294 + PFLU_RS02965 0.89 -0.6
683,294 + PFLU_RS02965 0.89 -2.5
683,294 + PFLU_RS02965 0.89 -0.6
683,294 + PFLU_RS02965 0.89 -0.5
683,294 + PFLU_RS02965 0.89 -0.8
683,294 + PFLU_RS02965 0.89 +0.8
683,294 + PFLU_RS02965 0.89 -1.2
683,294 + PFLU_RS02965 0.89 +0.4
683,294 + PFLU_RS02965 0.89 +0.0
683,294 + PFLU_RS02965 0.89 -1.0
683,294 + PFLU_RS02965 0.89 -0.2
683,294 + PFLU_RS02965 0.89 -1.7
683,294 + PFLU_RS02965 0.89 -0.6
683,294 + PFLU_RS02965 0.89 -1.2
683,294 + PFLU_RS02965 0.89 -0.8
683,294 + PFLU_RS02965 0.89 -2.0
683,295 - PFLU_RS02965 0.89 -1.4
683,295 - PFLU_RS02965 0.89 -2.2
683,295 - PFLU_RS02965 0.89 -1.2
683,295 - PFLU_RS02965 0.89 -1.3
683,295 - PFLU_RS02965 0.89 -1.0
683,295 - PFLU_RS02965 0.89 -0.6
683,295 - PFLU_RS02965 0.89 +1.8
683,295 - PFLU_RS02965 0.89 +0.0
683,295 - PFLU_RS02965 0.89 -2.4
683,295 - PFLU_RS02965 0.89 -1.9
683,295 - PFLU_RS02965 0.89 -1.7
683,295 - PFLU_RS02965 0.89 -1.9
683,295 - PFLU_RS02965 0.89 -1.3
683,295 - PFLU_RS02965 0.89 +0.9
683,295 - PFLU_RS02965 0.89 -1.8
683,295 - PFLU_RS02965 0.89 -0.8
683,295 - PFLU_RS02965 0.89 -3.0
683,295 - PFLU_RS02965 0.89 -0.6
683,295 - PFLU_RS02965 0.89 +0.0
683,295 - PFLU_RS02965 0.89 -2.0
683,295 - PFLU_RS02965 0.89 -0.8
683,295 - PFLU_RS02965 0.89 -2.6
683,295 - PFLU_RS02965 0.89 +0.4
683,295 - PFLU_RS02965 0.89 -2.2
683,298 + PFLU_RS02965 0.90 -0.4
683,298 + PFLU_RS02965 0.90 -1.6
683,298 + PFLU_RS02965 0.90 -0.8
683,298 + PFLU_RS02965 0.90 -2.0
683,298 + PFLU_RS02965 0.90 -2.1
683,298 + PFLU_RS02965 0.90 -0.4
683,298 + PFLU_RS02965 0.90 +0.9
683,298 + PFLU_RS02965 0.90 -3.2
683,298 + PFLU_RS02965 0.90 -1.5
683,298 + PFLU_RS02965 0.90 +0.0
683,298 + PFLU_RS02965 0.90 -1.4
683,298 + PFLU_RS02965 0.90 +2.8
683,298 + PFLU_RS02965 0.90 -1.1
683,298 + PFLU_RS02965 0.90 -1.4
683,298 + PFLU_RS02965 0.90 -1.0
683,298 + PFLU_RS02965 0.90 +0.0
683,298 + PFLU_RS02965 0.90 -0.4
683,298 + PFLU_RS02965 0.90 -0.4
683,298 + PFLU_RS02965 0.90 +2.4
683,298 + PFLU_RS02965 0.90 +0.1
683,298 + PFLU_RS02965 0.90 -0.8
683,298 + PFLU_RS02965 0.90 +0.0
683,299 - -1.1
683,299 - -1.1
683,299 - -0.4
683,299 - +0.1
683,299 - +0.6
683,299 - +0.4
683,299 - -1.5
683,299 - +1.4
683,299 - +2.4
683,299 - -1.0
683,299 - -1.3
683,299 - -2.0
683,299 - +0.6
683,299 - -2.3
683,299 - -0.3
683,299 - -1.1
683,299 - -0.4
683,299 - +0.5
683,299 - -0.8
683,299 - +1.4
683,299 - +0.0
683,299 - +0.0
683,316 + -1.6
683,317 - -0.8
683,317 - -1.9
683,317 - -2.0
683,317 - -1.7
683,396 + -1.0
683,396 + -2.6
683,397 - -1.0
683,397 - -1.4
683,420 + -1.4
683,420 + -1.0
683,420 + -1.0
683,421 - -1.4
683,421 - +1.9
683,421 - -2.5
683,421 - -1.6
683,556 + PFLU_RS02970 0.16 -0.6
683,556 + PFLU_RS02970 0.16 -1.6
683,556 + PFLU_RS02970 0.16 -2.2
683,556 + PFLU_RS02970 0.16 -1.3
683,556 + PFLU_RS02970 0.16 +0.4
683,556 + PFLU_RS02970 0.16 +2.4
683,557 - PFLU_RS02970 0.16 -1.1
683,573 + PFLU_RS02970 0.17 -2.0
683,573 + PFLU_RS02970 0.17 -0.8
683,573 + PFLU_RS02970 0.17 +0.0
683,573 + PFLU_RS02970 0.17 +1.9
683,574 - PFLU_RS02970 0.17 -1.5
683,574 - PFLU_RS02970 0.17 -1.0
683,897 + PFLU_RS02970 0.44 -0.6
683,897 + PFLU_RS02970 0.44 -0.6
683,897 + PFLU_RS02970 0.44 -1.5
683,898 - PFLU_RS02970 0.44 -2.3
683,898 - PFLU_RS02970 0.44 -1.5
683,942 + PFLU_RS02970 0.48 -0.2
684,096 + PFLU_RS02970 0.60 +0.0
684,096 + PFLU_RS02970 0.60 -1.7
684,097 - PFLU_RS02970 0.61 -2.0
684,331 + PFLU_RS02970 0.80 -1.5
684,331 + PFLU_RS02970 0.80 +0.9
684,332 - PFLU_RS02970 0.80 -1.8
684,332 - PFLU_RS02970 0.80 +0.4
684,332 - PFLU_RS02970 0.80 -1.5
684,332 - PFLU_RS02970 0.80 -1.6

Or see this region's nucleotide sequence