Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00855 and PFLU_RS00860 overlap by 4 nucleotides PFLU_RS00860 and PFLU_RS30215 are separated by 2 nucleotides
PFLU_RS00855: PFLU_RS00855 - SIR2 family protein, at 189,148 to 190,404
_RS00855
PFLU_RS00860: PFLU_RS00860 - ATP-binding protein, at 190,401 to 192,233
_RS00860
PFLU_RS30215: PFLU_RS30215 - KTSC domain-containing protein, at 192,236 to 192,445
_RS30215
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 189.406 kb on - strand, within PFLU_RS00855 at 189.408 kb on + strand, within PFLU_RS00855 at 189.468 kb on - strand, within PFLU_RS00855 at 189.533 kb on + strand, within PFLU_RS00855 at 189.534 kb on - strand, within PFLU_RS00855 at 189.568 kb on + strand, within PFLU_RS00855 at 189.627 kb on + strand, within PFLU_RS00855 at 189.631 kb on - strand, within PFLU_RS00855 at 189.749 kb on + strand, within PFLU_RS00855 at 189.750 kb on - strand, within PFLU_RS00855 at 189.750 kb on - strand, within PFLU_RS00855 at 189.750 kb on - strand, within PFLU_RS00855 at 189.869 kb on + strand, within PFLU_RS00855 at 189.898 kb on + strand, within PFLU_RS00855 at 189.899 kb on - strand, within PFLU_RS00855 at 189.922 kb on - strand, within PFLU_RS00855 at 189.953 kb on + strand, within PFLU_RS00855 at 189.987 kb on + strand, within PFLU_RS00855 at 190.018 kb on - strand, within PFLU_RS00855 at 190.065 kb on - strand, within PFLU_RS00855 at 190.099 kb on - strand, within PFLU_RS00855 at 190.105 kb on - strand, within PFLU_RS00855 at 190.109 kb on + strand, within PFLU_RS00855 at 190.110 kb on - strand, within PFLU_RS00855 at 190.110 kb on - strand, within PFLU_RS00855 at 190.140 kb on - strand, within PFLU_RS00855 at 190.140 kb on - strand, within PFLU_RS00855 at 190.194 kb on + strand, within PFLU_RS00855 at 190.196 kb on + strand, within PFLU_RS00855 at 190.196 kb on + strand, within PFLU_RS00855 at 190.197 kb on - strand, within PFLU_RS00855 at 190.197 kb on - strand, within PFLU_RS00855 at 190.304 kb on + strand at 190.356 kb on - strand at 190.356 kb on - strand at 190.422 kb on + strand at 190.426 kb on + strand at 190.427 kb on - strand at 190.427 kb on - strand at 190.427 kb on - strand at 190.460 kb on + strand at 190.465 kb on + strand at 190.483 kb on + strand at 190.514 kb on + strand at 190.514 kb on + strand at 190.514 kb on + strand at 190.514 kb on + strand at 190.515 kb on - strand at 190.515 kb on - strand at 190.515 kb on - strand at 190.625 kb on + strand, within PFLU_RS00860 at 190.719 kb on - strand, within PFLU_RS00860 at 190.719 kb on - strand, within PFLU_RS00860 at 190.722 kb on - strand, within PFLU_RS00860 at 190.759 kb on + strand, within PFLU_RS00860 at 190.759 kb on + strand, within PFLU_RS00860 at 190.759 kb on + strand, within PFLU_RS00860 at 190.760 kb on - strand, within PFLU_RS00860 at 190.770 kb on + strand, within PFLU_RS00860 at 190.771 kb on - strand, within PFLU_RS00860 at 190.826 kb on + strand, within PFLU_RS00860 at 190.840 kb on + strand, within PFLU_RS00860 at 190.841 kb on - strand, within PFLU_RS00860 at 190.846 kb on + strand, within PFLU_RS00860 at 190.899 kb on - strand, within PFLU_RS00860 at 190.988 kb on + strand, within PFLU_RS00860 at 191.001 kb on + strand, within PFLU_RS00860 at 191.001 kb on + strand, within PFLU_RS00860 at 191.002 kb on - strand, within PFLU_RS00860 at 191.002 kb on - strand, within PFLU_RS00860 at 191.048 kb on + strand, within PFLU_RS00860 at 191.048 kb on + strand, within PFLU_RS00860 at 191.174 kb on - strand, within PFLU_RS00860 at 191.186 kb on + strand, within PFLU_RS00860 at 191.234 kb on - strand, within PFLU_RS00860 at 191.237 kb on + strand, within PFLU_RS00860 at 191.333 kb on - strand, within PFLU_RS00860 at 191.374 kb on - strand, within PFLU_RS00860 at 191.374 kb on - strand, within PFLU_RS00860 at 191.429 kb on + strand, within PFLU_RS00860 at 191.431 kb on + strand, within PFLU_RS00860 at 191.432 kb on - strand, within PFLU_RS00860 at 191.436 kb on - strand, within PFLU_RS00860 at 191.478 kb on + strand, within PFLU_RS00860 at 191.479 kb on - strand, within PFLU_RS00860 at 191.492 kb on - strand, within PFLU_RS00860 at 191.591 kb on - strand, within PFLU_RS00860 at 191.591 kb on - strand, within PFLU_RS00860 at 191.651 kb on + strand, within PFLU_RS00860 at 191.717 kb on - strand, within PFLU_RS00860 at 191.783 kb on - strand, within PFLU_RS00860 at 191.789 kb on + strand, within PFLU_RS00860 at 191.789 kb on + strand, within PFLU_RS00860 at 191.790 kb on - strand, within PFLU_RS00860 at 191.812 kb on - strand, within PFLU_RS00860 at 192.001 kb on + strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.067 kb on + strand at 192.067 kb on + strand at 192.068 kb on - strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.129 kb on + strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.193 kb on + strand at 192.194 kb on - strand at 192.194 kb on - strand at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.333 kb on - strand, within PFLU_RS30215 at 192.339 kb on - strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.342 kb on - strand, within PFLU_RS30215 at 192.343 kb on + strand, within PFLU_RS30215 at 192.344 kb on - strand, within PFLU_RS30215 at 192.362 kb on + strand, within PFLU_RS30215 at 192.389 kb on - strand, within PFLU_RS30215 at 192.409 kb on - strand, within PFLU_RS30215 at 192.411 kb on - strand, within PFLU_RS30215 at 192.411 kb on - strand, within PFLU_RS30215 at 192.487 kb on + strand at 192.488 kb on - strand at 192.510 kb on - strand at 192.530 kb on + strand at 192.531 kb on - strand at 192.531 kb on - strand at 192.531 kb on - strand at 192.547 kb on - strand at 192.565 kb on - strand at 192.645 kb on + strand at 192.659 kb on + strand at 192.660 kb on - strand at 192.663 kb on + strand at 192.663 kb on + strand at 192.742 kb on + strand at 192.908 kb on - strand at 192.911 kb on + strand at 192.917 kb on + strand at 192.918 kb on - strand at 192.985 kb on + strand at 193.032 kb on - strand at 193.033 kb on + strand at 193.033 kb on + strand at 193.033 kb on + strand at 193.058 kb on + strand at 193.209 kb on - strand at 193.216 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride remove 189,406 - PFLU_RS00855 0.21 +1.4 189,408 + PFLU_RS00855 0.21 -3.2 189,468 - PFLU_RS00855 0.25 -1.1 189,533 + PFLU_RS00855 0.31 +0.5 189,534 - PFLU_RS00855 0.31 -2.5 189,568 + PFLU_RS00855 0.33 -0.2 189,627 + PFLU_RS00855 0.38 -1.4 189,631 - PFLU_RS00855 0.38 +2.0 189,749 + PFLU_RS00855 0.48 -0.2 189,750 - PFLU_RS00855 0.48 -1.4 189,750 - PFLU_RS00855 0.48 +0.3 189,750 - PFLU_RS00855 0.48 -1.8 189,869 + PFLU_RS00855 0.57 -2.7 189,898 + PFLU_RS00855 0.60 -1.3 189,899 - PFLU_RS00855 0.60 +0.5 189,922 - PFLU_RS00855 0.62 +1.0 189,953 + PFLU_RS00855 0.64 -2.1 189,987 + PFLU_RS00855 0.67 -0.9 190,018 - PFLU_RS00855 0.69 +0.9 190,065 - PFLU_RS00855 0.73 -0.4 190,099 - PFLU_RS00855 0.76 +2.1 190,105 - PFLU_RS00855 0.76 -1.6 190,109 + PFLU_RS00855 0.76 +0.4 190,110 - PFLU_RS00855 0.77 -0.8 190,110 - PFLU_RS00855 0.77 -1.1 190,140 - PFLU_RS00855 0.79 -1.9 190,140 - PFLU_RS00855 0.79 -0.9 190,194 + PFLU_RS00855 0.83 +0.8 190,196 + PFLU_RS00855 0.83 -0.6 190,196 + PFLU_RS00855 0.83 +0.8 190,197 - PFLU_RS00855 0.83 +1.8 190,197 - PFLU_RS00855 0.83 -1.1 190,304 + -1.4 190,356 - +0.8 190,356 - +1.5 190,422 + -0.6 190,426 + -2.7 190,427 - +0.1 190,427 - -1.3 190,427 - -0.3 190,460 + -0.0 190,465 + -0.2 190,483 + -2.7 190,514 + +0.3 190,514 + +0.6 190,514 + +0.1 190,514 + -1.2 190,515 - +1.8 190,515 - +2.4 190,515 - -0.8 190,625 + PFLU_RS00860 0.12 -2.1 190,719 - PFLU_RS00860 0.17 -1.8 190,719 - PFLU_RS00860 0.17 -2.9 190,722 - PFLU_RS00860 0.18 -1.4 190,759 + PFLU_RS00860 0.20 +1.3 190,759 + PFLU_RS00860 0.20 +1.3 190,759 + PFLU_RS00860 0.20 -1.9 190,760 - PFLU_RS00860 0.20 +1.0 190,770 + PFLU_RS00860 0.20 +1.5 190,771 - PFLU_RS00860 0.20 +0.8 190,826 + PFLU_RS00860 0.23 -0.4 190,840 + PFLU_RS00860 0.24 +2.0 190,841 - PFLU_RS00860 0.24 +2.6 190,846 + PFLU_RS00860 0.24 -1.2 190,899 - PFLU_RS00860 0.27 -1.5 190,988 + PFLU_RS00860 0.32 -0.6 191,001 + PFLU_RS00860 0.33 +1.4 191,001 + PFLU_RS00860 0.33 -1.8 191,002 - PFLU_RS00860 0.33 +0.9 191,002 - PFLU_RS00860 0.33 -3.3 191,048 + PFLU_RS00860 0.35 +0.0 191,048 + PFLU_RS00860 0.35 +0.1 191,174 - PFLU_RS00860 0.42 -1.5 191,186 + PFLU_RS00860 0.43 +0.8 191,234 - PFLU_RS00860 0.45 -2.1 191,237 + PFLU_RS00860 0.46 +1.1 191,333 - PFLU_RS00860 0.51 -0.9 191,374 - PFLU_RS00860 0.53 -2.2 191,374 - PFLU_RS00860 0.53 +0.4 191,429 + PFLU_RS00860 0.56 +0.1 191,431 + PFLU_RS00860 0.56 -2.6 191,432 - PFLU_RS00860 0.56 -0.8 191,436 - PFLU_RS00860 0.56 -0.2 191,478 + PFLU_RS00860 0.59 +0.8 191,479 - PFLU_RS00860 0.59 -1.5 191,492 - PFLU_RS00860 0.60 -0.7 191,591 - PFLU_RS00860 0.65 -1.2 191,591 - PFLU_RS00860 0.65 -1.4 191,651 + PFLU_RS00860 0.68 -0.2 191,717 - PFLU_RS00860 0.72 -0.9 191,783 - PFLU_RS00860 0.75 -0.9 191,789 + PFLU_RS00860 0.76 -0.6 191,789 + PFLU_RS00860 0.76 -1.7 191,790 - PFLU_RS00860 0.76 -2.1 191,812 - PFLU_RS00860 0.77 -1.2 192,001 + PFLU_RS00860 0.87 -0.9 192,002 - PFLU_RS00860 0.87 +0.9 192,002 - PFLU_RS00860 0.87 +2.6 192,002 - PFLU_RS00860 0.87 -1.6 192,002 - PFLU_RS00860 0.87 +1.1 192,002 - PFLU_RS00860 0.87 +3.4 192,067 + +0.1 192,067 + -1.5 192,068 - +2.4 192,086 + +0.8 192,086 + -0.4 192,086 + -2.5 192,086 + +1.3 192,086 + -0.3 192,086 + +5.4 192,086 + -1.4 192,087 - +3.3 192,087 - -0.3 192,087 - +2.6 192,087 - +1.2 192,087 - -0.6 192,087 - +0.9 192,087 - -2.3 192,129 + +0.8 192,130 - -1.5 192,130 - +1.9 192,130 - +0.4 192,130 - +0.5 192,167 + +1.2 192,167 + +1.5 192,167 + -0.4 192,167 + -1.8 192,167 + -2.7 192,167 + +0.7 192,167 + -2.5 192,167 + +1.4 192,167 + +1.0 192,167 + -2.5 192,167 + +1.8 192,167 + +3.7 192,167 + +1.5 192,167 + -0.2 192,168 - -0.2 192,168 - -0.5 192,168 - -1.7 192,168 - +2.0 192,168 - +1.6 192,168 - -0.6 192,168 - -0.6 192,168 - -3.1 192,168 - -2.9 192,193 + -2.6 192,194 - -1.9 192,194 - +1.1 192,265 + PFLU_RS30215 0.14 -1.2 192,265 + PFLU_RS30215 0.14 -1.6 192,265 + PFLU_RS30215 0.14 -0.7 192,265 + PFLU_RS30215 0.14 +0.4 192,266 - PFLU_RS30215 0.14 +0.1 192,266 - PFLU_RS30215 0.14 -1.5 192,266 - PFLU_RS30215 0.14 -1.6 192,266 - PFLU_RS30215 0.14 -1.7 192,266 - PFLU_RS30215 0.14 -1.2 192,266 - PFLU_RS30215 0.14 -1.2 192,266 - PFLU_RS30215 0.14 +0.7 192,270 + PFLU_RS30215 0.16 -2.6 192,270 + PFLU_RS30215 0.16 -1.6 192,270 + PFLU_RS30215 0.16 -0.6 192,270 + PFLU_RS30215 0.16 -2.9 192,270 + PFLU_RS30215 0.16 -2.4 192,270 + PFLU_RS30215 0.16 -1.4 192,271 - PFLU_RS30215 0.17 -0.2 192,271 - PFLU_RS30215 0.17 -1.9 192,271 - PFLU_RS30215 0.17 -0.2 192,271 - PFLU_RS30215 0.17 -2.8 192,333 - PFLU_RS30215 0.46 -0.9 192,339 - PFLU_RS30215 0.49 +1.1 192,341 + PFLU_RS30215 0.50 -1.4 192,341 + PFLU_RS30215 0.50 -2.7 192,341 + PFLU_RS30215 0.50 -0.6 192,341 + PFLU_RS30215 0.50 -0.7 192,342 - PFLU_RS30215 0.50 +1.0 192,343 + PFLU_RS30215 0.51 -3.2 192,344 - PFLU_RS30215 0.51 +0.3 192,362 + PFLU_RS30215 0.60 -0.3 192,389 - PFLU_RS30215 0.73 +1.5 192,409 - PFLU_RS30215 0.82 +0.9 192,411 - PFLU_RS30215 0.83 -1.5 192,411 - PFLU_RS30215 0.83 -3.4 192,487 + -0.9 192,488 - -1.7 192,510 - -1.3 192,530 + +0.1 192,531 - -1.2 192,531 - -2.8 192,531 - -1.4 192,547 - -0.8 192,565 - -1.6 192,645 + -1.4 192,659 + -0.1 192,660 - +0.6 192,663 + -1.4 192,663 + -1.4 192,742 + -0.4 192,908 - -1.0 192,911 + -0.2 192,917 + +0.1 192,918 - +1.1 192,985 + +0.5 193,032 - -1.3 193,033 + -2.1 193,033 + -2.2 193,033 + +1.7 193,058 + -1.6 193,209 - -0.4 193,216 + -1.4
Or see this region's nucleotide sequence