Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_722

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_721 and Pf6N2E2_722 are separated by 11 nucleotidesPf6N2E2_722 and Pf6N2E2_723 overlap by 7 nucleotidesPf6N2E2_723 and Pf6N2E2_724 are separated by 464 nucleotides Pf6N2E2_721 - FIG139552: Putative protease, at 825,010 to 826,005 _721 Pf6N2E2_722 - FIG139928: Putative protease, at 826,017 to 826,907 _722 Pf6N2E2_723 - FIG138517: Putative lipid carrier protein, at 826,901 to 827,371 _723 Pf6N2E2_724 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 827,836 to 828,513 _724 Position (kb) 826 827Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.083 kb on - strandat 825.083 kb on - strandat 825.193 kb on + strand, within Pf6N2E2_721at 825.193 kb on + strand, within Pf6N2E2_721at 825.193 kb on + strand, within Pf6N2E2_721at 825.207 kb on + strand, within Pf6N2E2_721at 825.208 kb on - strand, within Pf6N2E2_721at 825.208 kb on - strand, within Pf6N2E2_721at 825.357 kb on - strand, within Pf6N2E2_721at 825.550 kb on + strand, within Pf6N2E2_721at 825.550 kb on + strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.668 kb on - strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.848 kb on - strand, within Pf6N2E2_721at 825.848 kb on - strand, within Pf6N2E2_721at 825.986 kb on - strandat 825.986 kb on - strandat 826.288 kb on + strand, within Pf6N2E2_722at 826.289 kb on - strand, within Pf6N2E2_722at 826.375 kb on - strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.400 kb on - strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.466 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.886 kb on - strandat 826.886 kb on - strandat 827.102 kb on + strand, within Pf6N2E2_723at 827.103 kb on - strand, within Pf6N2E2_723at 827.310 kb on + strand, within Pf6N2E2_723at 827.311 kb on - strand, within Pf6N2E2_723at 827.401 kb on + strandat 827.401 kb on + strandat 827.402 kb on - strandat 827.402 kb on - strandat 827.604 kb on + strandat 827.604 kb on + strandat 827.613 kb on + strandat 827.613 kb on + strandat 827.613 kb on + strandat 827.614 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
remove
825,082 + -2.1
825,082 + -3.0
825,082 + -5.0
825,082 + -2.2
825,082 + -2.4
825,082 + -1.8
825,082 + -2.9
825,083 - -3.1
825,083 - +0.0
825,193 + Pf6N2E2_721 0.18 -1.6
825,193 + Pf6N2E2_721 0.18 -4.0
825,193 + Pf6N2E2_721 0.18 -2.0
825,207 + Pf6N2E2_721 0.20 -2.6
825,208 - Pf6N2E2_721 0.20 -3.5
825,208 - Pf6N2E2_721 0.20 -1.6
825,357 - Pf6N2E2_721 0.35 -1.6
825,550 + Pf6N2E2_721 0.54 -3.9
825,550 + Pf6N2E2_721 0.54 -3.1
825,551 - Pf6N2E2_721 0.54 -2.5
825,551 - Pf6N2E2_721 0.54 -3.9
825,551 - Pf6N2E2_721 0.54 -2.6
825,551 - Pf6N2E2_721 0.54 -2.8
825,668 - Pf6N2E2_721 0.66 -2.8
825,847 + Pf6N2E2_721 0.84 -3.3
825,847 + Pf6N2E2_721 0.84 -1.4
825,847 + Pf6N2E2_721 0.84 -1.6
825,848 - Pf6N2E2_721 0.84 -1.9
825,848 - Pf6N2E2_721 0.84 +1.6
825,986 - -2.3
825,986 - -2.6
826,288 + Pf6N2E2_722 0.30 -2.4
826,289 - Pf6N2E2_722 0.31 -1.9
826,375 - Pf6N2E2_722 0.40 -1.3
826,399 + Pf6N2E2_722 0.43 -1.5
826,399 + Pf6N2E2_722 0.43 -2.1
826,399 + Pf6N2E2_722 0.43 -2.6
826,400 - Pf6N2E2_722 0.43 +1.6
826,465 + Pf6N2E2_722 0.50 -2.6
826,465 + Pf6N2E2_722 0.50 -2.0
826,465 + Pf6N2E2_722 0.50 -2.3
826,466 - Pf6N2E2_722 0.50 +0.6
826,717 - Pf6N2E2_722 0.79 -3.4
826,717 - Pf6N2E2_722 0.79 -2.4
826,717 - Pf6N2E2_722 0.79 -4.0
826,717 - Pf6N2E2_722 0.79 -1.0
826,717 - Pf6N2E2_722 0.79 -1.8
826,886 - -2.4
826,886 - +0.0
827,102 + Pf6N2E2_723 0.43 -1.6
827,103 - Pf6N2E2_723 0.43 -1.7
827,310 + Pf6N2E2_723 0.87 -1.3
827,311 - Pf6N2E2_723 0.87 -3.2
827,401 + +0.8
827,401 + -0.1
827,402 - -0.1
827,402 - -0.5
827,604 + -0.1
827,604 + +0.7
827,613 + +1.6
827,613 + +0.9
827,613 + -0.6
827,614 - +0.9

Or see this region's nucleotide sequence