Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_714

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_713 and Pf6N2E2_714 are separated by 566 nucleotidesPf6N2E2_714 and Pf6N2E2_715 are separated by 25 nucleotidesPf6N2E2_715 and Pf6N2E2_716 are separated by 73 nucleotides Pf6N2E2_713 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 816,906 to 817,589 _713 Pf6N2E2_714 - NnrS protein involved in response to NO, at 818,156 to 819,346 _714 Pf6N2E2_715 - putative membrane protein, at 819,372 to 819,809 _715 Pf6N2E2_716 - Nitric oxide-dependent regulator DnrN or NorA, at 819,883 to 820,557 _716 Position (kb) 818 819 820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.243 kb on + strand, within Pf6N2E2_713at 817.244 kb on - strand, within Pf6N2E2_713at 817.244 kb on - strand, within Pf6N2E2_713at 817.244 kb on - strand, within Pf6N2E2_713at 817.244 kb on - strandat 817.244 kb on - strand, within Pf6N2E2_713at 817.244 kb on - strand, within Pf6N2E2_713at 817.247 kb on + strand, within Pf6N2E2_713at 817.264 kb on + strand, within Pf6N2E2_713at 817.266 kb on + strand, within Pf6N2E2_713at 817.266 kb on + strand, within Pf6N2E2_713at 817.267 kb on - strand, within Pf6N2E2_713at 817.267 kb on - strand, within Pf6N2E2_713at 817.303 kb on + strand, within Pf6N2E2_713at 817.304 kb on - strand, within Pf6N2E2_713at 817.429 kb on + strand, within Pf6N2E2_713at 817.605 kb on + strandat 817.606 kb on - strandat 817.606 kb on - strandat 817.606 kb on - strandat 817.606 kb on - strandat 817.606 kb on - strandat 817.798 kb on + strandat 817.799 kb on - strandat 817.799 kb on - strandat 817.861 kb on + strandat 817.878 kb on + strandat 817.989 kb on + strandat 817.990 kb on - strandat 817.990 kb on - strandat 817.993 kb on + strandat 818.117 kb on + strandat 818.117 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.155 kb on + strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.156 kb on - strandat 818.177 kb on - strandat 818.588 kb on + strand, within Pf6N2E2_714at 818.604 kb on + strand, within Pf6N2E2_714at 818.604 kb on + strand, within Pf6N2E2_714at 818.605 kb on - strand, within Pf6N2E2_714at 818.640 kb on + strand, within Pf6N2E2_714at 818.846 kb on + strand, within Pf6N2E2_714at 818.846 kb on + strand, within Pf6N2E2_714at 818.846 kb on + strand, within Pf6N2E2_714at 818.846 kb on + strand, within Pf6N2E2_714at 818.847 kb on - strand, within Pf6N2E2_714at 818.990 kb on + strand, within Pf6N2E2_714at 819.285 kb on + strandat 819.286 kb on - strandat 819.287 kb on + strandat 819.287 kb on + strandat 819.287 kb on + strandat 819.288 kb on - strandat 819.376 kb on - strandat 819.676 kb on - strand, within Pf6N2E2_715at 819.676 kb on - strand, within Pf6N2E2_715at 819.676 kb on - strand, within Pf6N2E2_715at 819.676 kb on - strand, within Pf6N2E2_715at 819.690 kb on + strand, within Pf6N2E2_715at 819.690 kb on + strand, within Pf6N2E2_715at 819.690 kb on + strand, within Pf6N2E2_715at 819.691 kb on - strand, within Pf6N2E2_715at 819.795 kb on + strandat 819.795 kb on + strandat 819.795 kb on + strandat 819.796 kb on - strandat 819.864 kb on - strandat 819.978 kb on - strand, within Pf6N2E2_716at 820.181 kb on + strand, within Pf6N2E2_716at 820.181 kb on + strand, within Pf6N2E2_716at 820.181 kb on + strand, within Pf6N2E2_716at 820.181 kb on + strand, within Pf6N2E2_716at 820.182 kb on - strand, within Pf6N2E2_716at 820.182 kb on - strand, within Pf6N2E2_716at 820.182 kb on - strand, within Pf6N2E2_716at 820.182 kb on - strand, within Pf6N2E2_716

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
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817,243 + Pf6N2E2_713 0.49 -3.0
817,243 + Pf6N2E2_713 0.49 -0.1
817,243 + Pf6N2E2_713 0.49 -0.6
817,243 + Pf6N2E2_713 0.49 -0.5
817,243 + Pf6N2E2_713 0.49 -0.1
817,243 + Pf6N2E2_713 0.49 -0.4
817,243 + Pf6N2E2_713 0.49 +0.0
817,244 - Pf6N2E2_713 0.49 +1.0
817,244 - Pf6N2E2_713 0.49 +2.6
817,244 - Pf6N2E2_713 0.49 -0.2
817,244 - -0.7
817,244 - Pf6N2E2_713 0.49 -1.4
817,244 - Pf6N2E2_713 0.49 -0.1
817,247 + Pf6N2E2_713 0.50 -0.6
817,264 + Pf6N2E2_713 0.52 -1.1
817,266 + Pf6N2E2_713 0.53 +0.4
817,266 + Pf6N2E2_713 0.53 +0.0
817,267 - Pf6N2E2_713 0.53 +0.5
817,267 - Pf6N2E2_713 0.53 +0.1
817,303 + Pf6N2E2_713 0.58 -0.2
817,304 - Pf6N2E2_713 0.58 +1.6
817,429 + Pf6N2E2_713 0.76 +1.3
817,605 + +0.4
817,606 - +0.4
817,606 - -1.4
817,606 - -0.4
817,606 - +1.6
817,606 - +1.0
817,798 + -0.1
817,799 - +0.3
817,799 - +0.4
817,861 + +0.2
817,878 + +0.3
817,989 + +0.5
817,990 - -0.7
817,990 - +0.3
817,993 + +0.2
818,117 + +0.0
818,117 + +0.9
818,155 + -1.5
818,155 + +1.9
818,155 + -1.0
818,155 + +0.6
818,155 + -1.3
818,155 + -2.0
818,155 + -1.2
818,155 + +0.0
818,155 + -0.9
818,155 + -0.0
818,155 + +0.1
818,155 + -1.0
818,155 + -1.2
818,155 + +0.6
818,155 + -1.4
818,155 + -0.4
818,155 + -0.3
818,155 + -1.1
818,155 + +0.6
818,155 + -1.4
818,156 - -0.8
818,156 - -1.3
818,156 - +0.0
818,156 - +0.0
818,156 - -0.7
818,156 - -0.5
818,156 - +1.6
818,156 - -1.4
818,156 - -2.5
818,156 - -1.8
818,156 - -0.5
818,156 - -2.5
818,156 - -2.4
818,156 - +1.6
818,177 - -1.7
818,588 + Pf6N2E2_714 0.36 -0.6
818,604 + Pf6N2E2_714 0.38 -0.2
818,604 + Pf6N2E2_714 0.38 -0.5
818,605 - Pf6N2E2_714 0.38 -0.3
818,640 + Pf6N2E2_714 0.41 -0.7
818,846 + Pf6N2E2_714 0.58 -0.2
818,846 + Pf6N2E2_714 0.58 -0.7
818,846 + Pf6N2E2_714 0.58 -1.0
818,846 + Pf6N2E2_714 0.58 +0.8
818,847 - Pf6N2E2_714 0.58 +0.6
818,990 + Pf6N2E2_714 0.70 -0.5
819,285 + -2.7
819,286 - -2.3
819,287 + -1.6
819,287 + -0.6
819,287 + -1.9
819,288 - -1.0
819,376 - -0.1
819,676 - Pf6N2E2_715 0.69 -0.6
819,676 - Pf6N2E2_715 0.69 +0.5
819,676 - Pf6N2E2_715 0.69 +0.5
819,676 - Pf6N2E2_715 0.69 -0.3
819,690 + Pf6N2E2_715 0.73 -0.4
819,690 + Pf6N2E2_715 0.73 +0.2
819,690 + Pf6N2E2_715 0.73 -1.6
819,691 - Pf6N2E2_715 0.73 +1.0
819,795 + +0.1
819,795 + +0.1
819,795 + +1.0
819,796 - +1.6
819,864 - -0.2
819,978 - Pf6N2E2_716 0.14 -1.8
820,181 + Pf6N2E2_716 0.44 -1.1
820,181 + Pf6N2E2_716 0.44 -0.4
820,181 + Pf6N2E2_716 0.44 -0.3
820,181 + Pf6N2E2_716 0.44 +0.0
820,182 - Pf6N2E2_716 0.44 -0.1
820,182 - Pf6N2E2_716 0.44 -0.5
820,182 - Pf6N2E2_716 0.44 +0.5
820,182 - Pf6N2E2_716 0.44 +1.6

Or see this region's nucleotide sequence