Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4814 and Pf6N2E2_4815 are separated by 348 nucleotides Pf6N2E2_4815 and Pf6N2E2_4816 are separated by 49 nucleotides
Pf6N2E2_4814 - DNA-binding response regulator, LuxR family, near polyamine transporter, at 5,566,851 to 5,567,480
_4814
Pf6N2E2_4815 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 5,567,829 to 5,568,953
_4815
Pf6N2E2_4816 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 5,569,003 to 5,570,046
_4816
Position (kb)
5567
5568
5569 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5566.861 kb on + strand at 5566.861 kb on + strand at 5566.861 kb on + strand at 5566.861 kb on + strand at 5566.939 kb on + strand, within Pf6N2E2_4814 at 5567.220 kb on + strand, within Pf6N2E2_4814 at 5567.220 kb on + strand, within Pf6N2E2_4814 at 5567.220 kb on + strand, within Pf6N2E2_4814 at 5567.220 kb on + strand, within Pf6N2E2_4814 at 5567.220 kb on + strand, within Pf6N2E2_4814 at 5567.221 kb on - strand, within Pf6N2E2_4814 at 5567.221 kb on - strand, within Pf6N2E2_4814 at 5567.221 kb on - strand, within Pf6N2E2_4814 at 5567.221 kb on - strand, within Pf6N2E2_4814 at 5567.221 kb on - strand, within Pf6N2E2_4814 at 5567.399 kb on + strand, within Pf6N2E2_4814 at 5567.399 kb on + strand, within Pf6N2E2_4814 at 5567.400 kb on - strand, within Pf6N2E2_4814 at 5567.454 kb on + strand at 5567.454 kb on + strand at 5567.455 kb on - strand at 5567.455 kb on - strand at 5567.455 kb on - strand at 5567.455 kb on - strand at 5567.455 kb on - strand at 5567.455 kb on - strand at 5567.478 kb on + strand at 5567.479 kb on - strand at 5567.491 kb on + strand at 5567.492 kb on - strand at 5567.541 kb on + strand at 5567.541 kb on + strand at 5567.558 kb on - strand at 5567.606 kb on + strand at 5567.682 kb on + strand at 5567.682 kb on + strand at 5567.683 kb on - strand at 5567.704 kb on - strand at 5567.786 kb on + strand at 5567.786 kb on + strand at 5567.787 kb on - strand at 5567.813 kb on + strand at 5567.813 kb on + strand at 5567.813 kb on + strand at 5567.829 kb on - strand at 5567.898 kb on + strand at 5567.899 kb on - strand at 5567.899 kb on - strand at 5567.899 kb on - strand at 5568.114 kb on + strand, within Pf6N2E2_4815 at 5568.114 kb on + strand, within Pf6N2E2_4815 at 5568.114 kb on + strand, within Pf6N2E2_4815 at 5568.115 kb on - strand, within Pf6N2E2_4815 at 5568.296 kb on - strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.429 kb on + strand, within Pf6N2E2_4815 at 5568.430 kb on - strand, within Pf6N2E2_4815 at 5568.430 kb on - strand, within Pf6N2E2_4815 at 5568.430 kb on - strand, within Pf6N2E2_4815 at 5568.481 kb on + strand, within Pf6N2E2_4815 at 5568.528 kb on + strand, within Pf6N2E2_4815 at 5568.529 kb on - strand, within Pf6N2E2_4815 at 5568.529 kb on - strand, within Pf6N2E2_4815 at 5568.529 kb on - strand, within Pf6N2E2_4815 at 5568.529 kb on - strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.783 kb on + strand, within Pf6N2E2_4815 at 5568.784 kb on - strand, within Pf6N2E2_4815 at 5568.784 kb on - strand, within Pf6N2E2_4815 at 5568.784 kb on - strand, within Pf6N2E2_4815 at 5568.784 kb on - strand, within Pf6N2E2_4815 at 5568.940 kb on + strand at 5568.941 kb on - strand at 5568.941 kb on - strand at 5568.967 kb on + strand at 5568.967 kb on + strand at 5568.968 kb on - strand at 5568.968 kb on - strand at 5568.968 kb on - strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.000 kb on + strand at 5569.001 kb on - strand at 5569.001 kb on - strand at 5569.001 kb on - strand at 5569.001 kb on - strand at 5569.001 kb on - strand at 5569.001 kb on - strand at 5569.135 kb on + strand, within Pf6N2E2_4816 at 5569.135 kb on + strand, within Pf6N2E2_4816 at 5569.136 kb on - strand, within Pf6N2E2_4816 at 5569.136 kb on - strand, within Pf6N2E2_4816 at 5569.136 kb on - strand, within Pf6N2E2_4816 at 5569.183 kb on + strand, within Pf6N2E2_4816 at 5569.184 kb on - strand, within Pf6N2E2_4816 at 5569.184 kb on - strand, within Pf6N2E2_4816 at 5569.336 kb on + strand, within Pf6N2E2_4816 at 5569.337 kb on - strand, within Pf6N2E2_4816 at 5569.337 kb on - strand, within Pf6N2E2_4816 at 5569.399 kb on + strand, within Pf6N2E2_4816 at 5569.400 kb on - strand, within Pf6N2E2_4816 at 5569.498 kb on + strand, within Pf6N2E2_4816 at 5569.498 kb on + strand, within Pf6N2E2_4816 at 5569.498 kb on + strand, within Pf6N2E2_4816 at 5569.498 kb on + strand, within Pf6N2E2_4816 at 5569.498 kb on + strand, within Pf6N2E2_4816 at 5569.499 kb on - strand, within Pf6N2E2_4816 at 5569.549 kb on + strand, within Pf6N2E2_4816 at 5569.549 kb on + strand, within Pf6N2E2_4816 at 5569.549 kb on + strand, within Pf6N2E2_4816 at 5569.549 kb on + strand, within Pf6N2E2_4816 at 5569.550 kb on - strand, within Pf6N2E2_4816 at 5569.556 kb on + strand, within Pf6N2E2_4816 at 5569.752 kb on + strand, within Pf6N2E2_4816 at 5569.753 kb on - strand, within Pf6N2E2_4816 at 5569.756 kb on + strand, within Pf6N2E2_4816 at 5569.756 kb on + strand, within Pf6N2E2_4816 at 5569.757 kb on - strand, within Pf6N2E2_4816 at 5569.861 kb on + strand, within Pf6N2E2_4816 at 5569.861 kb on + strand, within Pf6N2E2_4816 at 5569.861 kb on + strand, within Pf6N2E2_4816 at 5569.861 kb on + strand, within Pf6N2E2_4816 at 5569.862 kb on - strand, within Pf6N2E2_4816 at 5569.862 kb on - strand, within Pf6N2E2_4816 at 5569.862 kb on - strand, within Pf6N2E2_4816 at 5569.879 kb on + strand, within Pf6N2E2_4816
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A remove 5,566,861 + +1.4 5,566,861 + -0.6 5,566,861 + +0.2 5,566,861 + -1.0 5,566,939 + Pf6N2E2_4814 0.14 +0.5 5,567,220 + Pf6N2E2_4814 0.59 -0.9 5,567,220 + Pf6N2E2_4814 0.59 -0.0 5,567,220 + Pf6N2E2_4814 0.59 -0.6 5,567,220 + Pf6N2E2_4814 0.59 +2.7 5,567,220 + Pf6N2E2_4814 0.59 +0.6 5,567,221 - Pf6N2E2_4814 0.59 -0.5 5,567,221 - Pf6N2E2_4814 0.59 -0.2 5,567,221 - Pf6N2E2_4814 0.59 +1.4 5,567,221 - Pf6N2E2_4814 0.59 +0.1 5,567,221 - Pf6N2E2_4814 0.59 -0.2 5,567,399 + Pf6N2E2_4814 0.87 +0.1 5,567,399 + Pf6N2E2_4814 0.87 -0.5 5,567,400 - Pf6N2E2_4814 0.87 +0.6 5,567,454 + +0.1 5,567,454 + -0.3 5,567,455 - -0.3 5,567,455 - +0.1 5,567,455 - -0.5 5,567,455 - +1.4 5,567,455 - -1.2 5,567,455 - -0.9 5,567,478 + -0.4 5,567,479 - -0.5 5,567,491 + -0.1 5,567,492 - +0.6 5,567,541 + -0.0 5,567,541 + -0.6 5,567,558 - +0.5 5,567,606 + +0.4 5,567,682 + -0.5 5,567,682 + -0.6 5,567,683 - -0.4 5,567,704 - -0.4 5,567,786 + +1.4 5,567,786 + +0.8 5,567,787 - +0.5 5,567,813 + +0.1 5,567,813 + -0.5 5,567,813 + +0.2 5,567,829 - +0.4 5,567,898 + +1.4 5,567,899 - -0.6 5,567,899 - -0.7 5,567,899 - +0.6 5,568,114 + Pf6N2E2_4815 0.25 -1.1 5,568,114 + Pf6N2E2_4815 0.25 +0.1 5,568,114 + Pf6N2E2_4815 0.25 +0.0 5,568,115 - Pf6N2E2_4815 0.25 -1.0 5,568,296 - Pf6N2E2_4815 0.42 -2.2 5,568,429 + Pf6N2E2_4815 0.53 -0.4 5,568,429 + Pf6N2E2_4815 0.53 +0.6 5,568,429 + Pf6N2E2_4815 0.53 -1.3 5,568,429 + Pf6N2E2_4815 0.53 +0.1 5,568,429 + Pf6N2E2_4815 0.53 -0.9 5,568,429 + Pf6N2E2_4815 0.53 -0.4 5,568,429 + Pf6N2E2_4815 0.53 -0.4 5,568,429 + Pf6N2E2_4815 0.53 -0.0 5,568,430 - Pf6N2E2_4815 0.53 -1.8 5,568,430 - Pf6N2E2_4815 0.53 +0.4 5,568,430 - Pf6N2E2_4815 0.53 +1.4 5,568,481 + Pf6N2E2_4815 0.58 -1.1 5,568,528 + Pf6N2E2_4815 0.62 -1.0 5,568,529 - Pf6N2E2_4815 0.62 -0.6 5,568,529 - Pf6N2E2_4815 0.62 +0.1 5,568,529 - Pf6N2E2_4815 0.62 -1.4 5,568,529 - Pf6N2E2_4815 0.62 +0.4 5,568,783 + Pf6N2E2_4815 0.85 +1.1 5,568,783 + Pf6N2E2_4815 0.85 -0.5 5,568,783 + Pf6N2E2_4815 0.85 -0.8 5,568,783 + Pf6N2E2_4815 0.85 -0.6 5,568,783 + Pf6N2E2_4815 0.85 -1.8 5,568,783 + Pf6N2E2_4815 0.85 -1.1 5,568,783 + Pf6N2E2_4815 0.85 -0.8 5,568,784 - Pf6N2E2_4815 0.85 -0.1 5,568,784 - Pf6N2E2_4815 0.85 -1.4 5,568,784 - Pf6N2E2_4815 0.85 +0.3 5,568,784 - Pf6N2E2_4815 0.85 -0.2 5,568,940 + -0.1 5,568,941 - -0.0 5,568,941 - +1.8 5,568,967 + +1.7 5,568,967 + +1.1 5,568,968 - -0.4 5,568,968 - -1.6 5,568,968 - -0.5 5,569,000 + -0.6 5,569,000 + +2.4 5,569,000 + -0.6 5,569,000 + +0.0 5,569,000 + -0.3 5,569,000 + +0.2 5,569,000 + -2.4 5,569,001 - -0.1 5,569,001 - -2.1 5,569,001 - +0.0 5,569,001 - -0.0 5,569,001 - -0.4 5,569,001 - +0.2 5,569,135 + Pf6N2E2_4816 0.13 +0.2 5,569,135 + Pf6N2E2_4816 0.13 +0.5 5,569,136 - Pf6N2E2_4816 0.13 -1.3 5,569,136 - Pf6N2E2_4816 0.13 -0.9 5,569,136 - Pf6N2E2_4816 0.13 +0.4 5,569,183 + Pf6N2E2_4816 0.17 +1.4 5,569,184 - Pf6N2E2_4816 0.17 +0.4 5,569,184 - Pf6N2E2_4816 0.17 -0.9 5,569,336 + Pf6N2E2_4816 0.32 -0.3 5,569,337 - Pf6N2E2_4816 0.32 -0.7 5,569,337 - Pf6N2E2_4816 0.32 -2.4 5,569,399 + Pf6N2E2_4816 0.38 +1.4 5,569,400 - Pf6N2E2_4816 0.38 +0.4 5,569,498 + Pf6N2E2_4816 0.47 -0.1 5,569,498 + Pf6N2E2_4816 0.47 -0.3 5,569,498 + Pf6N2E2_4816 0.47 -0.8 5,569,498 + Pf6N2E2_4816 0.47 -1.8 5,569,498 + Pf6N2E2_4816 0.47 -0.5 5,569,499 - Pf6N2E2_4816 0.48 -1.2 5,569,549 + Pf6N2E2_4816 0.52 -0.7 5,569,549 + Pf6N2E2_4816 0.52 -0.4 5,569,549 + Pf6N2E2_4816 0.52 -0.4 5,569,549 + Pf6N2E2_4816 0.52 +0.7 5,569,550 - Pf6N2E2_4816 0.52 -0.0 5,569,556 + Pf6N2E2_4816 0.53 -1.4 5,569,752 + Pf6N2E2_4816 0.72 +0.1 5,569,753 - Pf6N2E2_4816 0.72 -0.6 5,569,756 + Pf6N2E2_4816 0.72 +0.4 5,569,756 + Pf6N2E2_4816 0.72 -0.4 5,569,757 - Pf6N2E2_4816 0.72 -0.5 5,569,861 + Pf6N2E2_4816 0.82 -0.5 5,569,861 + Pf6N2E2_4816 0.82 -0.2 5,569,861 + Pf6N2E2_4816 0.82 +0.4 5,569,861 + Pf6N2E2_4816 0.82 +0.7 5,569,862 - Pf6N2E2_4816 0.82 -0.2 5,569,862 - Pf6N2E2_4816 0.82 -1.0 5,569,862 - Pf6N2E2_4816 0.82 -0.4 5,569,879 + Pf6N2E2_4816 0.84 -0.5
Or see this region's nucleotide sequence