Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3340

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,865,782	-		Pf6N2E2_3339	0.83	-0.3
3,865,998	+				+1.4
3,865,998	+				+0.2
3,866,107	+				+0.8
3,866,107	+				+1.4
3,866,107	+				+0.8
3,866,107	+				-0.2
3,866,108	-				+0.2
3,866,108	-				+1.0
3,866,108	-				-0.4
3,866,163	+				-0.2
3,866,164	-				+0.1
3,866,164	-				+0.3
3,866,253	-				+0.1
3,866,253	-				-0.0
3,866,261	+				-0.4
3,866,262	-				+0.8
3,866,262	-				+0.7
3,866,313	+				-0.2
3,866,313	+				+0.6
3,866,314	-				-0.3
3,866,403	-				-2.4
3,866,442	+				+2.4
3,866,480	+				-0.7
3,866,582	-				-1.0
3,866,621	+				-1.0
3,866,621	+				-0.5
3,866,621	+				-1.2
3,866,621	+				-1.0
3,866,621	+				-0.4
3,866,621	+				-0.5
3,866,621	+				-1.0
3,866,621	+				-2.9
3,866,621	+				-0.1
3,866,621	+				-0.2
3,866,622	-				-0.9
3,866,622	-				+0.4
3,866,622	-				-1.1
3,866,622	-				+1.4
3,866,622	-				-1.4
3,866,622	-				+1.4
3,866,622	-				-0.9
3,866,622	-				+1.4
3,866,622	-				-1.7
3,866,622	-				+0.4
3,866,622	-				-2.6
3,866,653	+				-0.5
3,866,653	+				-1.0
3,866,653	+				+1.4
3,866,653	+				-0.6
3,866,654	-				-1.6
3,866,654	-				-1.1
3,866,654	-				-1.1
3,866,792	+		Pf6N2E2_3340	0.23	-1.8
3,866,792	+		Pf6N2E2_3340	0.23	-0.2
3,866,793	-		Pf6N2E2_3340	0.23	-2.7
3,866,841	-		Pf6N2E2_3340	0.28	-3.0
3,866,967	-		Pf6N2E2_3340	0.40	-2.0
3,866,967	-		Pf6N2E2_3340	0.40	-1.6
3,866,967	-		Pf6N2E2_3340	0.40	-1.2
3,867,301	+		Pf6N2E2_3340	0.74	+1.4
3,867,301	+		Pf6N2E2_3340	0.74	-1.6
3,867,301	+		Pf6N2E2_3340	0.74	-1.3
3,867,302	-		Pf6N2E2_3340	0.74	-1.5
3,867,302	-		Pf6N2E2_3340	0.74	-0.2
3,867,302	-		Pf6N2E2_3340	0.74	-0.7
3,867,308	+		Pf6N2E2_3340	0.74	-0.7
3,867,308	+		Pf6N2E2_3340	0.74	-1.5
3,867,308	+		Pf6N2E2_3340	0.74	-1.6
3,867,308	+		Pf6N2E2_3340	0.74	-1.3
3,867,308	+		Pf6N2E2_3340	0.74	-2.4
3,867,308	+		Pf6N2E2_3340	0.74	+1.2
3,867,308	+		Pf6N2E2_3340	0.74	-0.5
3,867,308	+		Pf6N2E2_3340	0.74	-0.6
3,867,308	+		Pf6N2E2_3340	0.74	-0.4
3,867,308	+		Pf6N2E2_3340	0.74	-1.7
3,867,308	+		Pf6N2E2_3340	0.74	-1.7
3,867,308	+		Pf6N2E2_3340	0.74	-0.6
3,867,309	-		Pf6N2E2_3340	0.74	-0.6
3,867,309	-		Pf6N2E2_3340	0.74	-2.2
3,867,309	-		Pf6N2E2_3340	0.74	-2.0
3,867,309	-		Pf6N2E2_3340	0.74	-0.6
3,867,309	-		Pf6N2E2_3340	0.74	-2.3
3,867,309	-		Pf6N2E2_3340	0.74	-1.5
3,867,309	-		Pf6N2E2_3340	0.74	+0.7
3,867,309	-		Pf6N2E2_3340	0.74	-1.2
3,867,309	-		Pf6N2E2_3340	0.74	-1.2
3,867,309	-		Pf6N2E2_3340	0.74	-2.0
3,867,309	-		Pf6N2E2_3340	0.74	-4.0
3,867,309	-		Pf6N2E2_3340	0.74	-0.9
3,867,309	-		Pf6N2E2_3340	0.74	+1.4
3,867,309	-		Pf6N2E2_3340	0.74	-0.7
3,867,309	-		Pf6N2E2_3340	0.74	-1.2
3,867,309	-		Pf6N2E2_3340	0.74	-1.9
3,867,309	-		Pf6N2E2_3340	0.74	-0.5
3,867,309	-		Pf6N2E2_3340	0.74	-1.4
3,867,312	+		Pf6N2E2_3340	0.75	+1.4
3,867,312	+		Pf6N2E2_3340	0.75	-0.2
3,867,312	+		Pf6N2E2_3340	0.75	-1.0
3,867,312	+		Pf6N2E2_3340	0.75	-1.0
3,867,313	-		Pf6N2E2_3340	0.75	-1.6
3,867,313	-		Pf6N2E2_3340	0.75	-2.8
3,867,313	-		Pf6N2E2_3340	0.75	-0.7
3,867,313	-		Pf6N2E2_3340	0.75	-1.5
3,867,313	-		Pf6N2E2_3340	0.75	-2.7
3,867,313	-		Pf6N2E2_3340	0.75	-0.4
3,867,313	-		Pf6N2E2_3340	0.75	-3.2
3,867,313	-		Pf6N2E2_3340	0.75	-1.6
3,867,340	-		Pf6N2E2_3340	0.78	+2.4
3,867,503	+				+0.9
3,867,503	+				-1.0
3,867,504	-				-1.9
3,867,548	-				-0.6
3,867,548	-				-0.8
3,867,782	-		Pf6N2E2_3341	0.26	+0.2
3,867,782	-		Pf6N2E2_3341	0.26	-2.2
3,867,782	-		Pf6N2E2_3341	0.26	+0.2
3,867,816	-		Pf6N2E2_3341	0.30	-0.4
3,867,886	+		Pf6N2E2_3341	0.39	-1.0
3,867,886	+		Pf6N2E2_3341	0.39	-0.1
3,867,886	+		Pf6N2E2_3341	0.39	+0.2
3,867,887	-		Pf6N2E2_3341	0.39	+0.2
3,867,887	-		Pf6N2E2_3341	0.39	+0.3
3,867,887	-		Pf6N2E2_3341	0.39	+0.3
3,867,887	-		Pf6N2E2_3341	0.39	-0.8
3,867,887	-		Pf6N2E2_3341	0.39	+0.4
3,867,889	+		Pf6N2E2_3341	0.39	-1.2
3,867,890	-		Pf6N2E2_3341	0.40	-0.2
3,867,890	-		Pf6N2E2_3341	0.40	-1.0
3,867,890	-		Pf6N2E2_3341	0.40	+0.4
3,867,890	-		Pf6N2E2_3341	0.40	-0.0
3,867,890	-		Pf6N2E2_3341	0.40	+0.2
3,867,890	-		Pf6N2E2_3341	0.40	+1.4
3,867,890	-		Pf6N2E2_3341	0.40	+1.4
3,867,941	+		Pf6N2E2_3341	0.46	-0.2
3,867,941	+		Pf6N2E2_3341	0.46	+1.1
3,867,941	+		Pf6N2E2_3341	0.46	-0.6
3,867,941	+		Pf6N2E2_3341	0.46	+0.3
3,867,941	+		Pf6N2E2_3341	0.46	-0.1
3,867,941	+		Pf6N2E2_3341	0.46	+0.7
3,867,942	-		Pf6N2E2_3341	0.46	-1.7
3,867,942	-		Pf6N2E2_3341	0.46	-1.4
3,867,942	-		Pf6N2E2_3341	0.46	-0.0
3,867,942	-		Pf6N2E2_3341	0.46	+1.2
3,868,087	+		Pf6N2E2_3341	0.65	+0.8
3,868,087	+		Pf6N2E2_3341	0.65	-0.0
3,868,087	+		Pf6N2E2_3341	0.65	+0.4
3,868,088	-		Pf6N2E2_3341	0.65	+0.4
3,868,357	+				-0.6
3,868,357	+				-0.3
3,868,357	+				-0.2
3,868,485	+				+0.5
3,868,485	+				+0.9
3,868,485	+				+0.5
3,868,485	+				-0.1
3,868,486	-				-0.8
3,868,486	-				+0.1
3,868,486	-				-0.5