Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3334

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,854,018	+		Pf6N2E2_3333	0.77	+0.6
3,854,019	-		Pf6N2E2_3333	0.77	+0.7
3,854,022	+		Pf6N2E2_3333	0.77	-0.2
3,854,022	+		Pf6N2E2_3333	0.77	-0.5
3,854,022	+		Pf6N2E2_3333	0.77	+0.1
3,854,022	+		Pf6N2E2_3333	0.77	-0.4
3,854,022	+		Pf6N2E2_3333	0.77	-0.2
3,854,022	+		Pf6N2E2_3333	0.77	+0.3
3,854,022	+		Pf6N2E2_3333	0.77	-0.2
3,854,023	-		Pf6N2E2_3333	0.77	-1.6
3,854,023	-		Pf6N2E2_3333	0.77	-1.6
3,854,023	-		Pf6N2E2_3333	0.77	+0.4
3,854,066	+		Pf6N2E2_3333	0.81	-0.6
3,854,132	+		Pf6N2E2_3333	0.87	-2.2
3,854,132	+		Pf6N2E2_3333	0.87	-0.7
3,854,133	-		Pf6N2E2_3333	0.87	-2.2
3,854,133	-		Pf6N2E2_3333	0.87	-0.1
3,854,254	+				+0.0
3,854,254	+				+0.8
3,854,254	+				-1.0
3,854,255	-				-0.5
3,854,290	-				-0.7
3,854,290	-				+0.6
3,854,295	+				-1.0
3,854,296	-				+0.5
3,854,296	-				-0.5
3,854,317	-				-1.3
3,854,317	-				+0.6
3,854,487	+				+0.3
3,854,487	+				-0.2
3,854,488	-				-0.7
3,854,488	-				-0.1
3,854,488	-				+0.1
3,854,488	-				-0.2
3,854,543	+				+0.6
3,854,618	+				+1.4
3,854,618	+				-0.4
3,854,618	+				-0.2
3,854,654	+				-2.2
3,854,655	-				+0.1
3,854,697	-				-0.1
3,854,697	-				-1.2
3,854,777	-				-1.6
3,854,789	+				+0.2
3,854,789	+				+1.4
3,854,790	-				-0.3
3,854,790	-				-0.2
3,854,790	-				+0.7
3,854,790	-				+0.3
3,854,790	-				-1.2
3,854,790	-				-0.1
3,854,790	-				+0.1
3,854,790	-				-1.7
3,854,790	-				-0.3
3,854,790	-				-0.4
3,854,790	-				-0.6
3,854,790	-				+0.2
3,854,790	-				-1.4
3,854,811	+				-0.8
3,854,908	-		Pf6N2E2_3334	0.10	+0.1
3,854,908	-		Pf6N2E2_3334	0.10	+1.4
3,854,946	+		Pf6N2E2_3334	0.13	+0.2
3,854,947	-		Pf6N2E2_3334	0.13	+0.3
3,854,947	-		Pf6N2E2_3334	0.13	-1.9
3,854,947	-		Pf6N2E2_3334	0.13	-0.2
3,854,947	-		Pf6N2E2_3334	0.13	+0.0
3,854,947	-		Pf6N2E2_3334	0.13	-0.7
3,854,949	+		Pf6N2E2_3334	0.14	-0.9
3,854,949	+		Pf6N2E2_3334	0.14	-0.1
3,854,950	-		Pf6N2E2_3334	0.14	+0.9
3,854,950	-		Pf6N2E2_3334	0.14	-2.4
3,855,000	-		Pf6N2E2_3334	0.18	-0.1
3,855,000	-		Pf6N2E2_3334	0.18	-0.4
3,855,030	+		Pf6N2E2_3334	0.21	-0.6
3,855,030	+		Pf6N2E2_3334	0.21	+0.0
3,855,031	-		Pf6N2E2_3334	0.21	+0.6
3,855,031	-		Pf6N2E2_3334	0.21	+0.4
3,855,031	-		Pf6N2E2_3334	0.21	+0.2
3,855,031	-		Pf6N2E2_3334	0.21	+0.5
3,855,031	-		Pf6N2E2_3334	0.21	+1.4
3,855,042	-		Pf6N2E2_3334	0.22	-1.0
3,855,042	-		Pf6N2E2_3334	0.22	-1.0
3,855,081	+		Pf6N2E2_3334	0.25	-0.6
3,855,118	-		Pf6N2E2_3334	0.28	+1.1
3,855,123	+		Pf6N2E2_3334	0.29	+0.4
3,855,124	-		Pf6N2E2_3334	0.29	-1.1
3,855,144	+		Pf6N2E2_3334	0.30	-0.2
3,855,144	+		Pf6N2E2_3334	0.30	-0.6
3,855,145	-		Pf6N2E2_3334	0.30	+1.4
3,855,145	-		Pf6N2E2_3334	0.30	+0.4
3,855,207	+		Pf6N2E2_3334	0.36	+0.3
3,855,207	+		Pf6N2E2_3334	0.36	+0.2
3,855,207	+		Pf6N2E2_3334	0.36	-2.6
3,855,207	+		Pf6N2E2_3334	0.36	-0.2
3,855,207	+		Pf6N2E2_3334	0.36	+1.4
3,855,208	-		Pf6N2E2_3334	0.36	-0.6
3,855,208	-		Pf6N2E2_3334	0.36	+0.2
3,855,208	-		Pf6N2E2_3334	0.36	-0.7
3,855,211	+		Pf6N2E2_3334	0.36	+1.4
3,855,211	+		Pf6N2E2_3334	0.36	+0.1
3,855,211	+		Pf6N2E2_3334	0.36	-0.5
3,855,211	+		Pf6N2E2_3334	0.36	-0.6
3,855,211	+		Pf6N2E2_3334	0.36	-0.6
3,855,212	-		Pf6N2E2_3334	0.36	+0.2
3,855,212	-		Pf6N2E2_3334	0.36	-0.4
3,855,212	-		Pf6N2E2_3334	0.36	+1.4
3,855,483	+		Pf6N2E2_3334	0.60	-2.2
3,855,483	+		Pf6N2E2_3334	0.60	-0.6
3,855,483	+		Pf6N2E2_3334	0.60	+1.1
3,855,484	-		Pf6N2E2_3334	0.60	-0.2
3,855,484	-		Pf6N2E2_3334	0.60	-1.2
3,855,484	-		Pf6N2E2_3334	0.60	-0.7
3,855,484	-		Pf6N2E2_3334	0.60	-0.2
3,855,484	-		Pf6N2E2_3334	0.60	-0.7
3,855,484	-		Pf6N2E2_3334	0.60	-0.2
3,855,484	-		Pf6N2E2_3334	0.60	+0.8
3,855,513	+		Pf6N2E2_3334	0.62	+1.4
3,855,513	+		Pf6N2E2_3334	0.62	-0.1
3,855,645	-		Pf6N2E2_3334	0.73	-0.7
3,855,675	+		Pf6N2E2_3334	0.76	+1.4
3,855,675	+		Pf6N2E2_3334	0.76	-1.4
3,855,676	-		Pf6N2E2_3334	0.76	+1.4
3,855,813	+		Pf6N2E2_3334	0.88	+0.1
3,855,813	+		Pf6N2E2_3334	0.88	+0.2
3,855,814	-		Pf6N2E2_3334	0.88	+0.3
3,855,814	-		Pf6N2E2_3334	0.88	-1.4
3,855,814	-		Pf6N2E2_3334	0.88	+1.4
3,855,814	-		Pf6N2E2_3334	0.88	-0.2
3,855,822	+		Pf6N2E2_3334	0.89	+1.4
3,855,822	+		Pf6N2E2_3334	0.89	-1.0
3,855,822	+		Pf6N2E2_3334	0.89	-1.0
3,855,823	-		Pf6N2E2_3334	0.89	+0.0
3,855,828	+		Pf6N2E2_3334	0.89	-0.8
3,855,828	+		Pf6N2E2_3334	0.89	+1.1
3,855,828	+		Pf6N2E2_3334	0.89	+0.4
3,855,828	+		Pf6N2E2_3334	0.89	-0.1
3,855,828	+		Pf6N2E2_3334	0.89	-0.0
3,855,828	+		Pf6N2E2_3334	0.89	-2.9
3,855,828	+		Pf6N2E2_3334	0.89	-0.1
3,855,828	+		Pf6N2E2_3334	0.89	-1.2
3,855,828	+		Pf6N2E2_3334	0.89	-0.8
3,855,829	-		Pf6N2E2_3334	0.89	+0.6
3,855,867	+				-0.6
3,855,888	+				-0.4
3,855,889	-				+0.6
3,855,889	-				+0.4
3,855,889	-				+1.4
3,855,890	+				+0.0
3,855,890	+				-1.4
3,855,890	+				-1.2
3,855,890	+				+0.6
3,855,891	-				-0.6
3,855,900	+				-0.1
3,855,900	+				-0.0
3,855,945	+				-0.0
3,855,945	+				-2.0
3,855,945	+				+0.1
3,856,056	+				+0.4
3,856,057	-				-0.2
3,856,057	-				+1.4
3,856,057	-				-0.7
3,856,057	-				+0.4
3,856,153	+				-0.4
3,856,153	+				+0.5
3,856,153	+				+0.2
3,856,153	+				+0.5
3,856,175	+				+0.5
3,856,175	+				+1.0
3,856,175	+				-1.8
3,856,175	+				+0.6
3,856,176	-				-0.0
3,856,502	+		Pf6N2E2_3335	0.13	+0.3
3,856,503	-		Pf6N2E2_3335	0.13	+0.0
3,856,515	-		Pf6N2E2_3335	0.13	+0.6
3,856,515	-		Pf6N2E2_3335	0.13	-0.2
3,856,515	-		Pf6N2E2_3335	0.13	+0.1
3,856,664	+		Pf6N2E2_3335	0.19	+0.4
3,856,664	+		Pf6N2E2_3335	0.19	+0.1
3,856,664	+		Pf6N2E2_3335	0.19	+0.3
3,856,665	-		Pf6N2E2_3335	0.19	+0.3
3,856,665	-		Pf6N2E2_3335	0.19	-0.7
3,856,665	-		Pf6N2E2_3335	0.19	+0.2
3,856,665	-		Pf6N2E2_3335	0.19	-0.1
3,856,787	+		Pf6N2E2_3335	0.24	-0.1
3,856,787	+		Pf6N2E2_3335	0.24	-0.2
3,856,788	-		Pf6N2E2_3335	0.24	+0.4
3,856,788	-		Pf6N2E2_3335	0.24	+1.2
3,856,791	+		Pf6N2E2_3335	0.24	+1.4
3,856,792	-		Pf6N2E2_3335	0.24	+1.1
3,856,792	-		Pf6N2E2_3335	0.24	+1.4
3,856,823	+		Pf6N2E2_3335	0.25	-0.2
3,856,824	-		Pf6N2E2_3335	0.25	+0.2
3,856,824	-		Pf6N2E2_3335	0.25	+0.9
3,856,832	+		Pf6N2E2_3335	0.26	+0.3
3,856,833	-		Pf6N2E2_3335	0.26	+0.3