Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3131

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,621,576	+				+0.3
3,621,576	+				-0.1
3,621,576	+				-0.9
3,621,576	+				-1.0
3,621,576	+				-0.2
3,621,577	-				-1.2
3,621,577	-				-0.1
3,621,577	-				-0.4
3,621,580	+				+0.0
3,621,580	+				+0.1
3,621,580	+				-0.5
3,621,581	-				-0.6
3,621,581	-				+0.4
3,621,709	+				+0.3
3,621,919	-		Pf6N2E2_3130	0.35	+1.9
3,622,063	+		Pf6N2E2_3130	0.53	-0.6
3,622,157	-		Pf6N2E2_3130	0.65	-2.6
3,622,349	+		Pf6N2E2_3130	0.90	-0.1
3,622,349	+		Pf6N2E2_3130	0.90	-0.0
3,622,350	-				+0.4
3,622,378	+				-0.6
3,622,378	+				-0.4
3,622,379	-				-0.1
3,622,379	-				+0.5
3,622,381	+				+1.5
3,622,381	+				+0.1
3,622,381	+				+1.5
3,622,426	+				-0.2
3,622,426	+				-0.1
3,622,426	+				-1.2
3,622,427	-				-0.7
3,622,427	-				-0.1
3,622,876	+		Pf6N2E2_3131	0.26	-2.0
3,622,948	+		Pf6N2E2_3131	0.31	+1.9
3,622,948	+		Pf6N2E2_3131	0.31	-0.9
3,622,949	-		Pf6N2E2_3131	0.31	-0.6
3,623,001	+		Pf6N2E2_3131	0.35	+0.5
3,623,087	+		Pf6N2E2_3131	0.41	-2.9
3,623,088	-		Pf6N2E2_3131	0.41	+0.3
3,623,088	-		Pf6N2E2_3131	0.41	+0.4
3,623,320	+		Pf6N2E2_3131	0.57	+0.0
3,623,321	-		Pf6N2E2_3131	0.58	+0.5
3,623,359	+		Pf6N2E2_3131	0.60	-0.2
3,623,360	-		Pf6N2E2_3131	0.60	-1.9
3,623,360	-		Pf6N2E2_3131	0.60	-0.2
3,623,360	-		Pf6N2E2_3131	0.60	+0.5
3,623,377	+		Pf6N2E2_3131	0.61	+1.3
3,623,377	+		Pf6N2E2_3131	0.61	-0.1
3,623,378	-		Pf6N2E2_3131	0.62	+0.1
3,623,378	-		Pf6N2E2_3131	0.62	-0.1
3,623,425	+		Pf6N2E2_3131	0.65	+0.6
3,623,425	+		Pf6N2E2_3131	0.65	-1.5
3,623,425	+		Pf6N2E2_3131	0.65	-0.4
3,623,426	-		Pf6N2E2_3131	0.65	-0.7
3,623,529	+		Pf6N2E2_3131	0.72	-2.0
3,623,529	+		Pf6N2E2_3131	0.72	+0.2
3,623,530	-		Pf6N2E2_3131	0.72	+2.5
3,623,530	-		Pf6N2E2_3131	0.72	-0.1
3,623,530	-		Pf6N2E2_3131	0.72	+0.2
3,623,530	-		Pf6N2E2_3131	0.72	+0.1
3,623,684	+		Pf6N2E2_3131	0.83	-0.1
3,623,684	+		Pf6N2E2_3131	0.83	-0.4
3,623,684	+		Pf6N2E2_3131	0.83	-0.6
3,623,685	-		Pf6N2E2_3131	0.83	-0.8
3,623,685	-		Pf6N2E2_3131	0.83	+0.6
3,623,685	-		Pf6N2E2_3131	0.83	+1.5
3,623,779	+		Pf6N2E2_3131	0.90	+0.4
3,623,779	+		Pf6N2E2_3131	0.90	+2.1
3,623,780	-		Pf6N2E2_3131	0.90	+1.2
3,623,780	-		Pf6N2E2_3131	0.90	-0.0
3,623,875	+				-1.9
3,623,875	+				-0.1
3,623,875	+				-1.2
3,623,875	+				-0.6
3,623,875	+				+0.8
3,623,876	-				+0.3
3,623,876	-				-0.5
3,623,876	-				-0.5
3,623,876	-				+0.6
3,623,891	-				-0.3
3,623,980	-				+0.2
3,623,980	-				+3.1
3,623,980	-				-0.1
3,624,044	+				-0.2
3,624,051	+				+0.1
3,624,052	-				+0.1
3,624,052	-				-2.8
3,624,052	-				-0.0
3,624,052	-				+0.5
3,624,052	-				-1.3
3,624,053	+				+0.8
3,624,053	+				-2.4
3,624,054	-				+0.3
3,624,054	-				-0.4
3,624,163	-		Pf6N2E2_3132	0.34	-2.8
3,624,163	-		Pf6N2E2_3132	0.34	-1.4
3,624,190	-		Pf6N2E2_3132	0.45	-0.5
3,624,190	-		Pf6N2E2_3132	0.45	-0.5
3,624,190	-		Pf6N2E2_3132	0.45	+0.5
3,624,284	+		Pf6N2E2_3132	0.80	-0.9
3,624,284	+		Pf6N2E2_3132	0.80	-0.1
3,624,284	+		Pf6N2E2_3132	0.80	-1.3
3,624,311	+				+0.4
3,624,311	+				-0.7
3,624,312	-				+0.1
3,624,680	-		Pf6N2E2_3134	0.20	-0.1
3,624,816	+				-0.1
3,624,842	+				+0.0
3,624,842	+				+1.5
3,624,842	+				-0.5
3,624,907	-				-0.4