Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3128

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,618,649	+		Pf6N2E2_3127	0.34	+0.7
3,618,649	+		Pf6N2E2_3127	0.34	-0.5
3,618,649	+		Pf6N2E2_3127	0.34	+0.3
3,618,650	-		Pf6N2E2_3127	0.34	-1.2
3,618,650	-		Pf6N2E2_3127	0.34	-0.6
3,618,650	-		Pf6N2E2_3127	0.34	-0.6
3,618,709	+		Pf6N2E2_3127	0.40	+0.3
3,618,709	+		Pf6N2E2_3127	0.40	-0.6
3,618,709	+		Pf6N2E2_3127	0.40	+0.7
3,618,709	+		Pf6N2E2_3127	0.40	+1.5
3,618,710	-		Pf6N2E2_3127	0.40	+0.4
3,618,812	-		Pf6N2E2_3127	0.49	+0.1
3,618,812	-		Pf6N2E2_3127	0.49	-0.1
3,618,826	+		Pf6N2E2_3127	0.50	-0.3
3,618,826	+		Pf6N2E2_3127	0.50	-0.5
3,618,827	-		Pf6N2E2_3127	0.50	+0.7
3,618,847	+		Pf6N2E2_3127	0.52	+0.5
3,618,847	+		Pf6N2E2_3127	0.52	+0.2
3,618,847	+		Pf6N2E2_3127	0.52	+0.6
3,618,890	-		Pf6N2E2_3127	0.55	-1.2
3,618,910	+		Pf6N2E2_3127	0.57	-1.1
3,618,910	+		Pf6N2E2_3127	0.57	+0.7
3,618,910	+		Pf6N2E2_3127	0.57	+0.1
3,618,910	+		Pf6N2E2_3127	0.57	-0.4
3,618,910	+		Pf6N2E2_3127	0.57	+0.1
3,618,910	+		Pf6N2E2_3127	0.57	+0.5
3,618,911	-		Pf6N2E2_3127	0.57	-0.5
3,619,034	-		Pf6N2E2_3127	0.68	+0.6
3,619,034	-		Pf6N2E2_3127	0.68	-0.8
3,619,156	+		Pf6N2E2_3127	0.78	+1.5
3,619,156	+		Pf6N2E2_3127	0.78	+0.3
3,619,378	+				+0.1
3,619,378	+				-0.3
3,619,378	+				-0.3
3,619,378	+				-1.8
3,619,378	+				+0.2
3,619,378	+				-1.4
3,619,378	+				-0.6
3,619,379	-				-0.6
3,619,379	-				+1.5
3,619,379	-				+0.0
3,619,379	-				+0.2
3,619,412	+				-0.2
3,619,436	+				-0.7
3,619,662	+				+0.6
3,619,662	+				+1.5
3,619,853	+		Pf6N2E2_3128	0.21	+0.8
3,619,871	-		Pf6N2E2_3128	0.23	+0.2
3,619,871	-		Pf6N2E2_3128	0.23	-0.8
3,619,904	-		Pf6N2E2_3128	0.26	+0.3
3,619,904	-		Pf6N2E2_3128	0.26	-0.2
3,620,300	+		Pf6N2E2_3128	0.64	-1.9
3,620,300	+		Pf6N2E2_3128	0.64	+0.1
3,620,301	-		Pf6N2E2_3128	0.64	-0.7
3,620,301	-		Pf6N2E2_3128	0.64	+0.5
3,620,301	-		Pf6N2E2_3128	0.64	-0.3
3,620,301	-		Pf6N2E2_3128	0.64	-1.1
3,620,489	+		Pf6N2E2_3128	0.82	+0.1
3,620,510	+		Pf6N2E2_3128	0.84	-1.3
3,620,760	+				+0.9
3,620,761	-				-0.5
3,620,761	-				-0.3
3,620,761	-				+0.5
3,620,808	+		Pf6N2E2_3129	0.14	-0.3
3,620,809	-		Pf6N2E2_3129	0.14	+0.3
3,620,847	+		Pf6N2E2_3129	0.18	-0.4
3,620,848	-		Pf6N2E2_3129	0.18	-1.1
3,621,006	+		Pf6N2E2_3129	0.35	-0.3
3,621,006	+		Pf6N2E2_3129	0.35	-1.5
3,621,006	+		Pf6N2E2_3129	0.35	+0.5
3,621,007	-		Pf6N2E2_3129	0.35	-0.2
3,621,007	-		Pf6N2E2_3129	0.35	+1.2
3,621,009	+		Pf6N2E2_3129	0.35	-0.2
3,621,009	+		Pf6N2E2_3129	0.35	+0.2
3,621,009	+		Pf6N2E2_3129	0.35	-0.6
3,621,009	+		Pf6N2E2_3129	0.35	+1.0
3,621,009	+		Pf6N2E2_3129	0.35	+1.5
3,621,009	+		Pf6N2E2_3129	0.35	-0.5
3,621,009	+		Pf6N2E2_3129	0.35	-0.4
3,621,009	+		Pf6N2E2_3129	0.35	+0.2
3,621,009	+		Pf6N2E2_3129	0.35	-1.5
3,621,010	-		Pf6N2E2_3129	0.36	+0.5
3,621,010	-		Pf6N2E2_3129	0.36	+0.3
3,621,010	-		Pf6N2E2_3129	0.36	-0.9
3,621,010	-		Pf6N2E2_3129	0.36	-0.0
3,621,010	-		Pf6N2E2_3129	0.36	+0.4
3,621,010	-		Pf6N2E2_3129	0.36	-0.7
3,621,010	-		Pf6N2E2_3129	0.36	-0.1
3,621,010	-		Pf6N2E2_3129	0.36	+0.9
3,621,010	-		Pf6N2E2_3129	0.36	-0.2
3,621,010	-		Pf6N2E2_3129	0.36	+0.9
3,621,022	-		Pf6N2E2_3129	0.37	-1.4
3,621,051	+		Pf6N2E2_3129	0.40	+0.2
3,621,051	+		Pf6N2E2_3129	0.40	+0.1
3,621,052	-		Pf6N2E2_3129	0.40	-0.5
3,621,084	+		Pf6N2E2_3129	0.43	+0.3
3,621,084	+		Pf6N2E2_3129	0.43	-0.1
3,621,085	-		Pf6N2E2_3129	0.43	+0.5
3,621,085	-		Pf6N2E2_3129	0.43	+0.7
3,621,085	-		Pf6N2E2_3129	0.43	-0.4
3,621,085	-		Pf6N2E2_3129	0.43	-0.1
3,621,099	+		Pf6N2E2_3129	0.45	-0.7
3,621,100	-		Pf6N2E2_3129	0.45	-0.2
3,621,100	-		Pf6N2E2_3129	0.45	-0.6
3,621,100	-		Pf6N2E2_3129	0.45	+2.1
3,621,100	-		Pf6N2E2_3129	0.45	-0.3
3,621,255	+		Pf6N2E2_3129	0.61	+0.7
3,621,256	-		Pf6N2E2_3129	0.61	-0.8
3,621,256	-		Pf6N2E2_3129	0.61	-0.0
3,621,477	+		Pf6N2E2_3129	0.85	-0.1
3,621,477	+		Pf6N2E2_3129	0.85	+0.1
3,621,478	-		Pf6N2E2_3129	0.85	+1.5
3,621,478	-		Pf6N2E2_3129	0.85	-0.1
3,621,499	-		Pf6N2E2_3129	0.87	+0.3
3,621,576	+				+0.3
3,621,576	+				-0.1
3,621,576	+				-0.9
3,621,576	+				-1.0
3,621,576	+				-0.2
3,621,577	-				-1.2
3,621,577	-				-0.1
3,621,577	-				-0.4
3,621,580	+				+0.0
3,621,580	+				+0.1
3,621,580	+				-0.5
3,621,581	-				-0.6
3,621,581	-				+0.4