Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3128

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3127 and Pf6N2E2_3128 are separated by 229 nucleotidesPf6N2E2_3128 and Pf6N2E2_3129 are separated by 1 nucleotidesPf6N2E2_3129 and Pf6N2E2_3130 are separated by 25 nucleotides Pf6N2E2_3127 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 3,618,253 to 3,619,404 _3127 Pf6N2E2_3128 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 3,619,634 to 3,620,671 _3128 Pf6N2E2_3129 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 3,620,673 to 3,621,620 _3129 Pf6N2E2_3130 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 3,621,646 to 3,622,428 _3130 Position (kb) 3619 3620 3621Strain fitness (log2 ratio) -2 -1 0 1 2at 3618.649 kb on + strand, within Pf6N2E2_3127at 3618.649 kb on + strand, within Pf6N2E2_3127at 3618.649 kb on + strand, within Pf6N2E2_3127at 3618.650 kb on - strand, within Pf6N2E2_3127at 3618.650 kb on - strand, within Pf6N2E2_3127at 3618.650 kb on - strand, within Pf6N2E2_3127at 3618.709 kb on + strand, within Pf6N2E2_3127at 3618.709 kb on + strand, within Pf6N2E2_3127at 3618.709 kb on + strand, within Pf6N2E2_3127at 3618.709 kb on + strand, within Pf6N2E2_3127at 3618.710 kb on - strand, within Pf6N2E2_3127at 3618.812 kb on - strand, within Pf6N2E2_3127at 3618.812 kb on - strand, within Pf6N2E2_3127at 3618.826 kb on + strand, within Pf6N2E2_3127at 3618.826 kb on + strand, within Pf6N2E2_3127at 3618.827 kb on - strand, within Pf6N2E2_3127at 3618.847 kb on + strand, within Pf6N2E2_3127at 3618.847 kb on + strand, within Pf6N2E2_3127at 3618.847 kb on + strand, within Pf6N2E2_3127at 3618.890 kb on - strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.910 kb on + strand, within Pf6N2E2_3127at 3618.911 kb on - strand, within Pf6N2E2_3127at 3619.034 kb on - strand, within Pf6N2E2_3127at 3619.034 kb on - strand, within Pf6N2E2_3127at 3619.156 kb on + strand, within Pf6N2E2_3127at 3619.156 kb on + strand, within Pf6N2E2_3127at 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.378 kb on + strandat 3619.379 kb on - strandat 3619.379 kb on - strandat 3619.379 kb on - strandat 3619.379 kb on - strandat 3619.412 kb on + strandat 3619.436 kb on + strandat 3619.662 kb on + strandat 3619.662 kb on + strandat 3619.853 kb on + strand, within Pf6N2E2_3128at 3619.871 kb on - strand, within Pf6N2E2_3128at 3619.871 kb on - strand, within Pf6N2E2_3128at 3619.904 kb on - strand, within Pf6N2E2_3128at 3619.904 kb on - strand, within Pf6N2E2_3128at 3620.300 kb on + strand, within Pf6N2E2_3128at 3620.300 kb on + strand, within Pf6N2E2_3128at 3620.301 kb on - strand, within Pf6N2E2_3128at 3620.301 kb on - strand, within Pf6N2E2_3128at 3620.301 kb on - strand, within Pf6N2E2_3128at 3620.301 kb on - strand, within Pf6N2E2_3128at 3620.489 kb on + strand, within Pf6N2E2_3128at 3620.510 kb on + strand, within Pf6N2E2_3128at 3620.760 kb on + strandat 3620.761 kb on - strandat 3620.761 kb on - strandat 3620.761 kb on - strandat 3620.808 kb on + strand, within Pf6N2E2_3129at 3620.809 kb on - strand, within Pf6N2E2_3129at 3620.847 kb on + strand, within Pf6N2E2_3129at 3620.848 kb on - strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.007 kb on - strand, within Pf6N2E2_3129at 3621.007 kb on - strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.022 kb on - strand, within Pf6N2E2_3129at 3621.051 kb on + strand, within Pf6N2E2_3129at 3621.051 kb on + strand, within Pf6N2E2_3129at 3621.052 kb on - strand, within Pf6N2E2_3129at 3621.084 kb on + strand, within Pf6N2E2_3129at 3621.084 kb on + strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.099 kb on + strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.255 kb on + strand, within Pf6N2E2_3129at 3621.256 kb on - strand, within Pf6N2E2_3129at 3621.256 kb on - strand, within Pf6N2E2_3129at 3621.477 kb on + strand, within Pf6N2E2_3129at 3621.477 kb on + strand, within Pf6N2E2_3129at 3621.478 kb on - strand, within Pf6N2E2_3129at 3621.478 kb on - strand, within Pf6N2E2_3129at 3621.499 kb on - strand, within Pf6N2E2_3129at 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.577 kb on - strandat 3621.577 kb on - strandat 3621.577 kb on - strandat 3621.580 kb on + strandat 3621.580 kb on + strandat 3621.580 kb on + strandat 3621.581 kb on - strandat 3621.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
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3,618,649 + Pf6N2E2_3127 0.34 +0.7
3,618,649 + Pf6N2E2_3127 0.34 -0.5
3,618,649 + Pf6N2E2_3127 0.34 +0.3
3,618,650 - Pf6N2E2_3127 0.34 -1.2
3,618,650 - Pf6N2E2_3127 0.34 -0.6
3,618,650 - Pf6N2E2_3127 0.34 -0.6
3,618,709 + Pf6N2E2_3127 0.40 +0.3
3,618,709 + Pf6N2E2_3127 0.40 -0.6
3,618,709 + Pf6N2E2_3127 0.40 +0.7
3,618,709 + Pf6N2E2_3127 0.40 +1.5
3,618,710 - Pf6N2E2_3127 0.40 +0.4
3,618,812 - Pf6N2E2_3127 0.49 +0.1
3,618,812 - Pf6N2E2_3127 0.49 -0.1
3,618,826 + Pf6N2E2_3127 0.50 -0.3
3,618,826 + Pf6N2E2_3127 0.50 -0.5
3,618,827 - Pf6N2E2_3127 0.50 +0.7
3,618,847 + Pf6N2E2_3127 0.52 +0.5
3,618,847 + Pf6N2E2_3127 0.52 +0.2
3,618,847 + Pf6N2E2_3127 0.52 +0.6
3,618,890 - Pf6N2E2_3127 0.55 -1.2
3,618,910 + Pf6N2E2_3127 0.57 -1.1
3,618,910 + Pf6N2E2_3127 0.57 +0.7
3,618,910 + Pf6N2E2_3127 0.57 +0.1
3,618,910 + Pf6N2E2_3127 0.57 -0.4
3,618,910 + Pf6N2E2_3127 0.57 +0.1
3,618,910 + Pf6N2E2_3127 0.57 +0.5
3,618,911 - Pf6N2E2_3127 0.57 -0.5
3,619,034 - Pf6N2E2_3127 0.68 +0.6
3,619,034 - Pf6N2E2_3127 0.68 -0.8
3,619,156 + Pf6N2E2_3127 0.78 +1.5
3,619,156 + Pf6N2E2_3127 0.78 +0.3
3,619,378 + +0.1
3,619,378 + -0.3
3,619,378 + -0.3
3,619,378 + -1.8
3,619,378 + +0.2
3,619,378 + -1.4
3,619,378 + -0.6
3,619,379 - -0.6
3,619,379 - +1.5
3,619,379 - +0.0
3,619,379 - +0.2
3,619,412 + -0.2
3,619,436 + -0.7
3,619,662 + +0.6
3,619,662 + +1.5
3,619,853 + Pf6N2E2_3128 0.21 +0.8
3,619,871 - Pf6N2E2_3128 0.23 +0.2
3,619,871 - Pf6N2E2_3128 0.23 -0.8
3,619,904 - Pf6N2E2_3128 0.26 +0.3
3,619,904 - Pf6N2E2_3128 0.26 -0.2
3,620,300 + Pf6N2E2_3128 0.64 -1.9
3,620,300 + Pf6N2E2_3128 0.64 +0.1
3,620,301 - Pf6N2E2_3128 0.64 -0.7
3,620,301 - Pf6N2E2_3128 0.64 +0.5
3,620,301 - Pf6N2E2_3128 0.64 -0.3
3,620,301 - Pf6N2E2_3128 0.64 -1.1
3,620,489 + Pf6N2E2_3128 0.82 +0.1
3,620,510 + Pf6N2E2_3128 0.84 -1.3
3,620,760 + +0.9
3,620,761 - -0.5
3,620,761 - -0.3
3,620,761 - +0.5
3,620,808 + Pf6N2E2_3129 0.14 -0.3
3,620,809 - Pf6N2E2_3129 0.14 +0.3
3,620,847 + Pf6N2E2_3129 0.18 -0.4
3,620,848 - Pf6N2E2_3129 0.18 -1.1
3,621,006 + Pf6N2E2_3129 0.35 -0.3
3,621,006 + Pf6N2E2_3129 0.35 -1.5
3,621,006 + Pf6N2E2_3129 0.35 +0.5
3,621,007 - Pf6N2E2_3129 0.35 -0.2
3,621,007 - Pf6N2E2_3129 0.35 +1.2
3,621,009 + Pf6N2E2_3129 0.35 -0.2
3,621,009 + Pf6N2E2_3129 0.35 +0.2
3,621,009 + Pf6N2E2_3129 0.35 -0.6
3,621,009 + Pf6N2E2_3129 0.35 +1.0
3,621,009 + Pf6N2E2_3129 0.35 +1.5
3,621,009 + Pf6N2E2_3129 0.35 -0.5
3,621,009 + Pf6N2E2_3129 0.35 -0.4
3,621,009 + Pf6N2E2_3129 0.35 +0.2
3,621,009 + Pf6N2E2_3129 0.35 -1.5
3,621,010 - Pf6N2E2_3129 0.36 +0.5
3,621,010 - Pf6N2E2_3129 0.36 +0.3
3,621,010 - Pf6N2E2_3129 0.36 -0.9
3,621,010 - Pf6N2E2_3129 0.36 -0.0
3,621,010 - Pf6N2E2_3129 0.36 +0.4
3,621,010 - Pf6N2E2_3129 0.36 -0.7
3,621,010 - Pf6N2E2_3129 0.36 -0.1
3,621,010 - Pf6N2E2_3129 0.36 +0.9
3,621,010 - Pf6N2E2_3129 0.36 -0.2
3,621,010 - Pf6N2E2_3129 0.36 +0.9
3,621,022 - Pf6N2E2_3129 0.37 -1.4
3,621,051 + Pf6N2E2_3129 0.40 +0.2
3,621,051 + Pf6N2E2_3129 0.40 +0.1
3,621,052 - Pf6N2E2_3129 0.40 -0.5
3,621,084 + Pf6N2E2_3129 0.43 +0.3
3,621,084 + Pf6N2E2_3129 0.43 -0.1
3,621,085 - Pf6N2E2_3129 0.43 +0.5
3,621,085 - Pf6N2E2_3129 0.43 +0.7
3,621,085 - Pf6N2E2_3129 0.43 -0.4
3,621,085 - Pf6N2E2_3129 0.43 -0.1
3,621,099 + Pf6N2E2_3129 0.45 -0.7
3,621,100 - Pf6N2E2_3129 0.45 -0.2
3,621,100 - Pf6N2E2_3129 0.45 -0.6
3,621,100 - Pf6N2E2_3129 0.45 +2.1
3,621,100 - Pf6N2E2_3129 0.45 -0.3
3,621,255 + Pf6N2E2_3129 0.61 +0.7
3,621,256 - Pf6N2E2_3129 0.61 -0.8
3,621,256 - Pf6N2E2_3129 0.61 -0.0
3,621,477 + Pf6N2E2_3129 0.85 -0.1
3,621,477 + Pf6N2E2_3129 0.85 +0.1
3,621,478 - Pf6N2E2_3129 0.85 +1.5
3,621,478 - Pf6N2E2_3129 0.85 -0.1
3,621,499 - Pf6N2E2_3129 0.87 +0.3
3,621,576 + +0.3
3,621,576 + -0.1
3,621,576 + -0.9
3,621,576 + -1.0
3,621,576 + -0.2
3,621,577 - -1.2
3,621,577 - -0.1
3,621,577 - -0.4
3,621,580 + +0.0
3,621,580 + +0.1
3,621,580 + -0.5
3,621,581 - -0.6
3,621,581 - +0.4

Or see this region's nucleotide sequence