Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2907

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,398,139	+		Pf6N2E2_2906	0.61	-0.1
3,398,227	+		Pf6N2E2_2906	0.67	+0.2
3,398,228	-		Pf6N2E2_2906	0.68	-1.2
3,398,228	-		Pf6N2E2_2906	0.68	-0.9
3,398,228	-		Pf6N2E2_2906	0.68	-0.0
3,398,349	-		Pf6N2E2_2906	0.76	-0.6
3,398,349	-		Pf6N2E2_2906	0.76	-0.0
3,398,358	+		Pf6N2E2_2906	0.77	-0.1
3,398,359	-		Pf6N2E2_2906	0.77	-0.2
3,398,359	-		Pf6N2E2_2906	0.77	-0.4
3,398,379	-		Pf6N2E2_2906	0.78	-1.4
3,398,436	+		Pf6N2E2_2906	0.82	+0.0
3,398,436	+		Pf6N2E2_2906	0.82	-0.4
3,398,437	-		Pf6N2E2_2906	0.82	-0.9
3,398,437	-		Pf6N2E2_2906	0.82	+1.9
3,398,438	+		Pf6N2E2_2906	0.82	-0.0
3,398,438	+		Pf6N2E2_2906	0.82	-0.4
3,398,438	+		Pf6N2E2_2906	0.82	-0.8
3,398,438	+		Pf6N2E2_2906	0.82	+1.5
3,398,438	+		Pf6N2E2_2906	0.82	-0.3
3,398,438	+		Pf6N2E2_2906	0.82	+0.2
3,398,438	+		Pf6N2E2_2906	0.82	-0.7
3,398,438	+		Pf6N2E2_2906	0.82	+0.4
3,398,438	+		Pf6N2E2_2906	0.82	-0.3
3,398,438	+		Pf6N2E2_2906	0.82	-1.3
3,398,438	+		Pf6N2E2_2906	0.82	+1.1
3,398,438	+		Pf6N2E2_2906	0.82	-1.4
3,398,438	+		Pf6N2E2_2906	0.82	+0.0
3,398,438	+		Pf6N2E2_2906	0.82	-1.1
3,398,438	+		Pf6N2E2_2906	0.82	-1.0
3,398,439	-		Pf6N2E2_2906	0.82	-0.1
3,398,439	-		Pf6N2E2_2906	0.82	-1.8
3,398,439	-		Pf6N2E2_2906	0.82	-0.4
3,398,439	-		Pf6N2E2_2906	0.82	+0.5
3,398,439	-		Pf6N2E2_2906	0.82	+0.1
3,398,439	-		Pf6N2E2_2906	0.82	-1.4
3,398,439	-		Pf6N2E2_2906	0.82	-1.8
3,398,439	-		Pf6N2E2_2906	0.82	-0.3
3,398,463	-		Pf6N2E2_2906	0.84	+1.5
3,398,463	-		Pf6N2E2_2906	0.84	-0.3
3,398,469	-		Pf6N2E2_2906	0.84	+0.8
3,398,469	-		Pf6N2E2_2906	0.84	-0.8
3,398,469	-		Pf6N2E2_2906	0.84	+0.0
3,398,705	+				-0.3
3,398,706	-				-1.1
3,398,710	+				-2.1
3,398,711	-				+0.5
3,398,714	+				-0.2
3,398,715	-				+2.0
3,398,715	-				-0.9
3,398,770	+				+0.0
3,398,770	+				-0.9
3,398,770	+				+0.1
3,398,771	-				+0.1
3,398,771	-				+1.3
3,398,771	-				+0.0
3,398,797	+				+0.0
3,398,802	-				+2.5
3,398,826	+				-0.3
3,398,852	+				+0.4
3,398,977	+				-0.8
3,398,978	-				-0.2
3,399,027	+				-0.7
3,399,049	-				-0.7
3,399,117	-				-0.0
3,399,117	-				-0.1
3,399,310	+		Pf6N2E2_2907	0.16	-0.0
3,399,310	+		Pf6N2E2_2907	0.16	+0.9
3,399,310	+		Pf6N2E2_2907	0.16	+0.3
3,399,310	+		Pf6N2E2_2907	0.16	+1.5
3,399,310	+		Pf6N2E2_2907	0.16	-0.4
3,399,311	-		Pf6N2E2_2907	0.16	-0.3
3,399,311	-		Pf6N2E2_2907	0.16	-2.1
3,399,311	-		Pf6N2E2_2907	0.16	-1.3
3,399,311	-		Pf6N2E2_2907	0.16	+1.5
3,399,311	-		Pf6N2E2_2907	0.16	-0.6
3,399,316	+		Pf6N2E2_2907	0.16	+0.5
3,399,340	+		Pf6N2E2_2907	0.18	-0.0
3,399,340	+		Pf6N2E2_2907	0.18	+0.2
3,399,340	+		Pf6N2E2_2907	0.18	+0.5
3,399,341	-		Pf6N2E2_2907	0.18	-0.5
3,399,341	-		Pf6N2E2_2907	0.18	+0.8
3,399,341	-		Pf6N2E2_2907	0.18	+0.2
3,399,341	-		Pf6N2E2_2907	0.18	-0.7
3,399,341	-		Pf6N2E2_2907	0.18	+0.1
3,399,368	-		Pf6N2E2_2907	0.20	+0.3
3,399,420	+		Pf6N2E2_2907	0.23	-0.7
3,399,430	+		Pf6N2E2_2907	0.24	+0.6
3,399,456	+		Pf6N2E2_2907	0.26	-0.1
3,399,456	+		Pf6N2E2_2907	0.26	+0.5
3,399,456	+		Pf6N2E2_2907	0.26	+0.9
3,399,456	+		Pf6N2E2_2907	0.26	-1.2
3,399,456	+		Pf6N2E2_2907	0.26	+0.7
3,399,457	-		Pf6N2E2_2907	0.26	+0.7
3,399,457	-		Pf6N2E2_2907	0.26	+0.4
3,399,457	-		Pf6N2E2_2907	0.26	+1.5
3,399,457	-		Pf6N2E2_2907	0.26	+0.2
3,399,459	+		Pf6N2E2_2907	0.26	-0.4
3,399,460	-		Pf6N2E2_2907	0.26	-0.2
3,399,584	+		Pf6N2E2_2907	0.35	+0.8
3,399,584	+		Pf6N2E2_2907	0.35	+0.7
3,399,585	-		Pf6N2E2_2907	0.35	+0.8
3,399,585	-		Pf6N2E2_2907	0.35	+0.0
3,399,585	-		Pf6N2E2_2907	0.35	+1.5
3,399,606	-		Pf6N2E2_2907	0.36	+1.5
3,399,625	-		Pf6N2E2_2907	0.38	+0.1
3,399,639	+		Pf6N2E2_2907	0.39	-0.6
3,399,768	+		Pf6N2E2_2907	0.48	-0.1
3,399,768	+		Pf6N2E2_2907	0.48	+0.2
3,399,769	-		Pf6N2E2_2907	0.48	-0.2
3,399,809	+		Pf6N2E2_2907	0.50	+0.7
3,399,809	+		Pf6N2E2_2907	0.50	+0.5
3,399,810	-		Pf6N2E2_2907	0.51	+0.2
3,399,810	-		Pf6N2E2_2907	0.51	+0.5
3,399,810	-		Pf6N2E2_2907	0.51	-0.1
3,399,810	-		Pf6N2E2_2907	0.51	+0.7
3,399,824	+		Pf6N2E2_2907	0.52	+0.3
3,400,073	+		Pf6N2E2_2907	0.69	-0.3
3,400,150	+		Pf6N2E2_2907	0.74	+0.2
3,400,150	+		Pf6N2E2_2907	0.74	+1.9
3,400,150	+		Pf6N2E2_2907	0.74	+0.3
3,400,150	+		Pf6N2E2_2907	0.74	+1.5
3,400,151	-		Pf6N2E2_2907	0.74	-0.7
3,400,151	-		Pf6N2E2_2907	0.74	-0.8
3,400,165	+		Pf6N2E2_2907	0.75	+0.5
3,400,166	-		Pf6N2E2_2907	0.75	+0.1
3,400,195	+		Pf6N2E2_2907	0.78	+0.3
3,400,213	+		Pf6N2E2_2907	0.79	-0.1
3,400,214	-		Pf6N2E2_2907	0.79	+0.4
3,400,246	+		Pf6N2E2_2907	0.81	-0.1
3,400,246	+		Pf6N2E2_2907	0.81	-0.2
3,400,246	+		Pf6N2E2_2907	0.81	-0.2
3,400,247	-		Pf6N2E2_2907	0.81	-1.0
3,400,247	-		Pf6N2E2_2907	0.81	-0.8
3,400,247	-		Pf6N2E2_2907	0.81	+0.5
3,400,306	+		Pf6N2E2_2907	0.85	-0.8
3,400,306	+		Pf6N2E2_2907	0.85	-0.6
3,400,306	+		Pf6N2E2_2907	0.85	+0.5
3,400,324	+		Pf6N2E2_2907	0.87	+0.0
3,400,324	+		Pf6N2E2_2907	0.87	+0.5
3,400,324	+		Pf6N2E2_2907	0.87	+0.2
3,400,325	-		Pf6N2E2_2907	0.87	-0.4
3,400,342	+		Pf6N2E2_2907	0.88	+0.2
3,400,342	+		Pf6N2E2_2907	0.88	-1.0
3,400,343	-		Pf6N2E2_2907	0.88	+0.5
3,400,343	-		Pf6N2E2_2907	0.88	-0.2
3,400,343	-		Pf6N2E2_2907	0.88	+0.4
3,400,343	-		Pf6N2E2_2907	0.88	+0.6
3,400,366	+		Pf6N2E2_2907	0.89	+0.4
3,400,366	+		Pf6N2E2_2907	0.89	-0.4
3,400,513	+				-0.8
3,400,513	+				+0.9
3,400,513	+				+0.0
3,400,513	+				+0.6
3,400,513	+				-0.1
3,400,513	+				-0.9
3,400,514	-				-0.3
3,400,514	-				+0.4
3,400,514	-				+0.1
3,400,514	-				+0.8
3,400,530	+				-0.3
3,400,531	-				-1.2
3,400,531	-				-0.1
3,400,531	-				+0.4
3,400,531	-				-0.4
3,400,545	+				+0.4
3,400,545	+				+0.5
3,400,546	-				-0.5
3,400,601	-				+2.5
3,401,060	+		Pf6N2E2_2908	0.41	-1.2
3,401,087	+		Pf6N2E2_2908	0.43	+0.5
3,401,087	+		Pf6N2E2_2908	0.43	-0.5
3,401,087	+		Pf6N2E2_2908	0.43	+0.5
3,401,087	+		Pf6N2E2_2908	0.43	-0.7
3,401,087	+		Pf6N2E2_2908	0.43	+0.5
3,401,088	-		Pf6N2E2_2908	0.43	-1.3
3,401,088	-		Pf6N2E2_2908	0.43	+0.1
3,401,132	+		Pf6N2E2_2908	0.47	+0.9
3,401,133	-		Pf6N2E2_2908	0.47	-0.7