Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2907

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2906 and Pf6N2E2_2907 are separated by 396 nucleotidesPf6N2E2_2907 and Pf6N2E2_2908 are separated by 31 nucleotides Pf6N2E2_2906 - Arginine/ornithine antiporter ArcD, at 3,397,264 to 3,398,691 _2906 Pf6N2E2_2907 - Arginine/ornithine antiporter ArcD, at 3,399,088 to 3,400,515 _2907 Pf6N2E2_2908 - Arginine deiminase (EC 3.5.3.6), at 3,400,547 to 3,401,803 _2908 Position (kb) 3399 3400 3401Strain fitness (log2 ratio) -2 -1 0 1 2at 3398.139 kb on + strand, within Pf6N2E2_2906at 3398.227 kb on + strand, within Pf6N2E2_2906at 3398.228 kb on - strand, within Pf6N2E2_2906at 3398.228 kb on - strand, within Pf6N2E2_2906at 3398.228 kb on - strand, within Pf6N2E2_2906at 3398.349 kb on - strand, within Pf6N2E2_2906at 3398.349 kb on - strand, within Pf6N2E2_2906at 3398.358 kb on + strand, within Pf6N2E2_2906at 3398.359 kb on - strand, within Pf6N2E2_2906at 3398.359 kb on - strand, within Pf6N2E2_2906at 3398.379 kb on - strand, within Pf6N2E2_2906at 3398.436 kb on + strand, within Pf6N2E2_2906at 3398.436 kb on + strand, within Pf6N2E2_2906at 3398.437 kb on - strand, within Pf6N2E2_2906at 3398.437 kb on - strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.438 kb on + strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.439 kb on - strand, within Pf6N2E2_2906at 3398.463 kb on - strand, within Pf6N2E2_2906at 3398.463 kb on - strand, within Pf6N2E2_2906at 3398.469 kb on - strand, within Pf6N2E2_2906at 3398.469 kb on - strand, within Pf6N2E2_2906at 3398.469 kb on - strand, within Pf6N2E2_2906at 3398.705 kb on + strandat 3398.706 kb on - strandat 3398.710 kb on + strandat 3398.711 kb on - strandat 3398.714 kb on + strandat 3398.715 kb on - strandat 3398.715 kb on - strandat 3398.770 kb on + strandat 3398.770 kb on + strandat 3398.770 kb on + strandat 3398.771 kb on - strandat 3398.771 kb on - strandat 3398.771 kb on - strandat 3398.797 kb on + strandat 3398.802 kb on - strandat 3398.826 kb on + strandat 3398.852 kb on + strandat 3398.977 kb on + strandat 3398.978 kb on - strandat 3399.027 kb on + strandat 3399.049 kb on - strandat 3399.117 kb on - strandat 3399.117 kb on - strandat 3399.310 kb on + strand, within Pf6N2E2_2907at 3399.310 kb on + strand, within Pf6N2E2_2907at 3399.310 kb on + strand, within Pf6N2E2_2907at 3399.310 kb on + strand, within Pf6N2E2_2907at 3399.310 kb on + strand, within Pf6N2E2_2907at 3399.311 kb on - strand, within Pf6N2E2_2907at 3399.311 kb on - strand, within Pf6N2E2_2907at 3399.311 kb on - strand, within Pf6N2E2_2907at 3399.311 kb on - strand, within Pf6N2E2_2907at 3399.311 kb on - strand, within Pf6N2E2_2907at 3399.316 kb on + strand, within Pf6N2E2_2907at 3399.340 kb on + strand, within Pf6N2E2_2907at 3399.340 kb on + strand, within Pf6N2E2_2907at 3399.340 kb on + strand, within Pf6N2E2_2907at 3399.341 kb on - strand, within Pf6N2E2_2907at 3399.341 kb on - strand, within Pf6N2E2_2907at 3399.341 kb on - strand, within Pf6N2E2_2907at 3399.341 kb on - strand, within Pf6N2E2_2907at 3399.341 kb on - strand, within Pf6N2E2_2907at 3399.368 kb on - strand, within Pf6N2E2_2907at 3399.420 kb on + strand, within Pf6N2E2_2907at 3399.430 kb on + strand, within Pf6N2E2_2907at 3399.456 kb on + strand, within Pf6N2E2_2907at 3399.456 kb on + strand, within Pf6N2E2_2907at 3399.456 kb on + strand, within Pf6N2E2_2907at 3399.456 kb on + strand, within Pf6N2E2_2907at 3399.456 kb on + strand, within Pf6N2E2_2907at 3399.457 kb on - strand, within Pf6N2E2_2907at 3399.457 kb on - strand, within Pf6N2E2_2907at 3399.457 kb on - strand, within Pf6N2E2_2907at 3399.457 kb on - strand, within Pf6N2E2_2907at 3399.459 kb on + strand, within Pf6N2E2_2907at 3399.460 kb on - strand, within Pf6N2E2_2907at 3399.584 kb on + strand, within Pf6N2E2_2907at 3399.584 kb on + strand, within Pf6N2E2_2907at 3399.585 kb on - strand, within Pf6N2E2_2907at 3399.585 kb on - strand, within Pf6N2E2_2907at 3399.585 kb on - strand, within Pf6N2E2_2907at 3399.606 kb on - strand, within Pf6N2E2_2907at 3399.625 kb on - strand, within Pf6N2E2_2907at 3399.639 kb on + strand, within Pf6N2E2_2907at 3399.768 kb on + strand, within Pf6N2E2_2907at 3399.768 kb on + strand, within Pf6N2E2_2907at 3399.769 kb on - strand, within Pf6N2E2_2907at 3399.809 kb on + strand, within Pf6N2E2_2907at 3399.809 kb on + strand, within Pf6N2E2_2907at 3399.810 kb on - strand, within Pf6N2E2_2907at 3399.810 kb on - strand, within Pf6N2E2_2907at 3399.810 kb on - strand, within Pf6N2E2_2907at 3399.810 kb on - strand, within Pf6N2E2_2907at 3399.824 kb on + strand, within Pf6N2E2_2907at 3400.073 kb on + strand, within Pf6N2E2_2907at 3400.150 kb on + strand, within Pf6N2E2_2907at 3400.150 kb on + strand, within Pf6N2E2_2907at 3400.150 kb on + strand, within Pf6N2E2_2907at 3400.150 kb on + strand, within Pf6N2E2_2907at 3400.151 kb on - strand, within Pf6N2E2_2907at 3400.151 kb on - strand, within Pf6N2E2_2907at 3400.165 kb on + strand, within Pf6N2E2_2907at 3400.166 kb on - strand, within Pf6N2E2_2907at 3400.195 kb on + strand, within Pf6N2E2_2907at 3400.213 kb on + strand, within Pf6N2E2_2907at 3400.214 kb on - strand, within Pf6N2E2_2907at 3400.246 kb on + strand, within Pf6N2E2_2907at 3400.246 kb on + strand, within Pf6N2E2_2907at 3400.246 kb on + strand, within Pf6N2E2_2907at 3400.247 kb on - strand, within Pf6N2E2_2907at 3400.247 kb on - strand, within Pf6N2E2_2907at 3400.247 kb on - strand, within Pf6N2E2_2907at 3400.306 kb on + strand, within Pf6N2E2_2907at 3400.306 kb on + strand, within Pf6N2E2_2907at 3400.306 kb on + strand, within Pf6N2E2_2907at 3400.324 kb on + strand, within Pf6N2E2_2907at 3400.324 kb on + strand, within Pf6N2E2_2907at 3400.324 kb on + strand, within Pf6N2E2_2907at 3400.325 kb on - strand, within Pf6N2E2_2907at 3400.342 kb on + strand, within Pf6N2E2_2907at 3400.342 kb on + strand, within Pf6N2E2_2907at 3400.343 kb on - strand, within Pf6N2E2_2907at 3400.343 kb on - strand, within Pf6N2E2_2907at 3400.343 kb on - strand, within Pf6N2E2_2907at 3400.343 kb on - strand, within Pf6N2E2_2907at 3400.366 kb on + strand, within Pf6N2E2_2907at 3400.366 kb on + strand, within Pf6N2E2_2907at 3400.513 kb on + strandat 3400.513 kb on + strandat 3400.513 kb on + strandat 3400.513 kb on + strandat 3400.513 kb on + strandat 3400.513 kb on + strandat 3400.514 kb on - strandat 3400.514 kb on - strandat 3400.514 kb on - strandat 3400.514 kb on - strandat 3400.530 kb on + strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.545 kb on + strandat 3400.545 kb on + strandat 3400.546 kb on - strandat 3400.601 kb on - strandat 3401.060 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.088 kb on - strand, within Pf6N2E2_2908at 3401.088 kb on - strand, within Pf6N2E2_2908at 3401.132 kb on + strand, within Pf6N2E2_2908at 3401.133 kb on - strand, within Pf6N2E2_2908

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
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3,398,139 + Pf6N2E2_2906 0.61 -0.1
3,398,227 + Pf6N2E2_2906 0.67 +0.2
3,398,228 - Pf6N2E2_2906 0.68 -1.2
3,398,228 - Pf6N2E2_2906 0.68 -0.9
3,398,228 - Pf6N2E2_2906 0.68 -0.0
3,398,349 - Pf6N2E2_2906 0.76 -0.6
3,398,349 - Pf6N2E2_2906 0.76 -0.0
3,398,358 + Pf6N2E2_2906 0.77 -0.1
3,398,359 - Pf6N2E2_2906 0.77 -0.2
3,398,359 - Pf6N2E2_2906 0.77 -0.4
3,398,379 - Pf6N2E2_2906 0.78 -1.4
3,398,436 + Pf6N2E2_2906 0.82 +0.0
3,398,436 + Pf6N2E2_2906 0.82 -0.4
3,398,437 - Pf6N2E2_2906 0.82 -0.9
3,398,437 - Pf6N2E2_2906 0.82 +1.9
3,398,438 + Pf6N2E2_2906 0.82 -0.0
3,398,438 + Pf6N2E2_2906 0.82 -0.4
3,398,438 + Pf6N2E2_2906 0.82 -0.8
3,398,438 + Pf6N2E2_2906 0.82 +1.5
3,398,438 + Pf6N2E2_2906 0.82 -0.3
3,398,438 + Pf6N2E2_2906 0.82 +0.2
3,398,438 + Pf6N2E2_2906 0.82 -0.7
3,398,438 + Pf6N2E2_2906 0.82 +0.4
3,398,438 + Pf6N2E2_2906 0.82 -0.3
3,398,438 + Pf6N2E2_2906 0.82 -1.3
3,398,438 + Pf6N2E2_2906 0.82 +1.1
3,398,438 + Pf6N2E2_2906 0.82 -1.4
3,398,438 + Pf6N2E2_2906 0.82 +0.0
3,398,438 + Pf6N2E2_2906 0.82 -1.1
3,398,438 + Pf6N2E2_2906 0.82 -1.0
3,398,439 - Pf6N2E2_2906 0.82 -0.1
3,398,439 - Pf6N2E2_2906 0.82 -1.8
3,398,439 - Pf6N2E2_2906 0.82 -0.4
3,398,439 - Pf6N2E2_2906 0.82 +0.5
3,398,439 - Pf6N2E2_2906 0.82 +0.1
3,398,439 - Pf6N2E2_2906 0.82 -1.4
3,398,439 - Pf6N2E2_2906 0.82 -1.8
3,398,439 - Pf6N2E2_2906 0.82 -0.3
3,398,463 - Pf6N2E2_2906 0.84 +1.5
3,398,463 - Pf6N2E2_2906 0.84 -0.3
3,398,469 - Pf6N2E2_2906 0.84 +0.8
3,398,469 - Pf6N2E2_2906 0.84 -0.8
3,398,469 - Pf6N2E2_2906 0.84 +0.0
3,398,705 + -0.3
3,398,706 - -1.1
3,398,710 + -2.1
3,398,711 - +0.5
3,398,714 + -0.2
3,398,715 - +2.0
3,398,715 - -0.9
3,398,770 + +0.0
3,398,770 + -0.9
3,398,770 + +0.1
3,398,771 - +0.1
3,398,771 - +1.3
3,398,771 - +0.0
3,398,797 + +0.0
3,398,802 - +2.5
3,398,826 + -0.3
3,398,852 + +0.4
3,398,977 + -0.8
3,398,978 - -0.2
3,399,027 + -0.7
3,399,049 - -0.7
3,399,117 - -0.0
3,399,117 - -0.1
3,399,310 + Pf6N2E2_2907 0.16 -0.0
3,399,310 + Pf6N2E2_2907 0.16 +0.9
3,399,310 + Pf6N2E2_2907 0.16 +0.3
3,399,310 + Pf6N2E2_2907 0.16 +1.5
3,399,310 + Pf6N2E2_2907 0.16 -0.4
3,399,311 - Pf6N2E2_2907 0.16 -0.3
3,399,311 - Pf6N2E2_2907 0.16 -2.1
3,399,311 - Pf6N2E2_2907 0.16 -1.3
3,399,311 - Pf6N2E2_2907 0.16 +1.5
3,399,311 - Pf6N2E2_2907 0.16 -0.6
3,399,316 + Pf6N2E2_2907 0.16 +0.5
3,399,340 + Pf6N2E2_2907 0.18 -0.0
3,399,340 + Pf6N2E2_2907 0.18 +0.2
3,399,340 + Pf6N2E2_2907 0.18 +0.5
3,399,341 - Pf6N2E2_2907 0.18 -0.5
3,399,341 - Pf6N2E2_2907 0.18 +0.8
3,399,341 - Pf6N2E2_2907 0.18 +0.2
3,399,341 - Pf6N2E2_2907 0.18 -0.7
3,399,341 - Pf6N2E2_2907 0.18 +0.1
3,399,368 - Pf6N2E2_2907 0.20 +0.3
3,399,420 + Pf6N2E2_2907 0.23 -0.7
3,399,430 + Pf6N2E2_2907 0.24 +0.6
3,399,456 + Pf6N2E2_2907 0.26 -0.1
3,399,456 + Pf6N2E2_2907 0.26 +0.5
3,399,456 + Pf6N2E2_2907 0.26 +0.9
3,399,456 + Pf6N2E2_2907 0.26 -1.2
3,399,456 + Pf6N2E2_2907 0.26 +0.7
3,399,457 - Pf6N2E2_2907 0.26 +0.7
3,399,457 - Pf6N2E2_2907 0.26 +0.4
3,399,457 - Pf6N2E2_2907 0.26 +1.5
3,399,457 - Pf6N2E2_2907 0.26 +0.2
3,399,459 + Pf6N2E2_2907 0.26 -0.4
3,399,460 - Pf6N2E2_2907 0.26 -0.2
3,399,584 + Pf6N2E2_2907 0.35 +0.8
3,399,584 + Pf6N2E2_2907 0.35 +0.7
3,399,585 - Pf6N2E2_2907 0.35 +0.8
3,399,585 - Pf6N2E2_2907 0.35 +0.0
3,399,585 - Pf6N2E2_2907 0.35 +1.5
3,399,606 - Pf6N2E2_2907 0.36 +1.5
3,399,625 - Pf6N2E2_2907 0.38 +0.1
3,399,639 + Pf6N2E2_2907 0.39 -0.6
3,399,768 + Pf6N2E2_2907 0.48 -0.1
3,399,768 + Pf6N2E2_2907 0.48 +0.2
3,399,769 - Pf6N2E2_2907 0.48 -0.2
3,399,809 + Pf6N2E2_2907 0.50 +0.7
3,399,809 + Pf6N2E2_2907 0.50 +0.5
3,399,810 - Pf6N2E2_2907 0.51 +0.2
3,399,810 - Pf6N2E2_2907 0.51 +0.5
3,399,810 - Pf6N2E2_2907 0.51 -0.1
3,399,810 - Pf6N2E2_2907 0.51 +0.7
3,399,824 + Pf6N2E2_2907 0.52 +0.3
3,400,073 + Pf6N2E2_2907 0.69 -0.3
3,400,150 + Pf6N2E2_2907 0.74 +0.2
3,400,150 + Pf6N2E2_2907 0.74 +1.9
3,400,150 + Pf6N2E2_2907 0.74 +0.3
3,400,150 + Pf6N2E2_2907 0.74 +1.5
3,400,151 - Pf6N2E2_2907 0.74 -0.7
3,400,151 - Pf6N2E2_2907 0.74 -0.8
3,400,165 + Pf6N2E2_2907 0.75 +0.5
3,400,166 - Pf6N2E2_2907 0.75 +0.1
3,400,195 + Pf6N2E2_2907 0.78 +0.3
3,400,213 + Pf6N2E2_2907 0.79 -0.1
3,400,214 - Pf6N2E2_2907 0.79 +0.4
3,400,246 + Pf6N2E2_2907 0.81 -0.1
3,400,246 + Pf6N2E2_2907 0.81 -0.2
3,400,246 + Pf6N2E2_2907 0.81 -0.2
3,400,247 - Pf6N2E2_2907 0.81 -1.0
3,400,247 - Pf6N2E2_2907 0.81 -0.8
3,400,247 - Pf6N2E2_2907 0.81 +0.5
3,400,306 + Pf6N2E2_2907 0.85 -0.8
3,400,306 + Pf6N2E2_2907 0.85 -0.6
3,400,306 + Pf6N2E2_2907 0.85 +0.5
3,400,324 + Pf6N2E2_2907 0.87 +0.0
3,400,324 + Pf6N2E2_2907 0.87 +0.5
3,400,324 + Pf6N2E2_2907 0.87 +0.2
3,400,325 - Pf6N2E2_2907 0.87 -0.4
3,400,342 + Pf6N2E2_2907 0.88 +0.2
3,400,342 + Pf6N2E2_2907 0.88 -1.0
3,400,343 - Pf6N2E2_2907 0.88 +0.5
3,400,343 - Pf6N2E2_2907 0.88 -0.2
3,400,343 - Pf6N2E2_2907 0.88 +0.4
3,400,343 - Pf6N2E2_2907 0.88 +0.6
3,400,366 + Pf6N2E2_2907 0.89 +0.4
3,400,366 + Pf6N2E2_2907 0.89 -0.4
3,400,513 + -0.8
3,400,513 + +0.9
3,400,513 + +0.0
3,400,513 + +0.6
3,400,513 + -0.1
3,400,513 + -0.9
3,400,514 - -0.3
3,400,514 - +0.4
3,400,514 - +0.1
3,400,514 - +0.8
3,400,530 + -0.3
3,400,531 - -1.2
3,400,531 - -0.1
3,400,531 - +0.4
3,400,531 - -0.4
3,400,545 + +0.4
3,400,545 + +0.5
3,400,546 - -0.5
3,400,601 - +2.5
3,401,060 + Pf6N2E2_2908 0.41 -1.2
3,401,087 + Pf6N2E2_2908 0.43 +0.5
3,401,087 + Pf6N2E2_2908 0.43 -0.5
3,401,087 + Pf6N2E2_2908 0.43 +0.5
3,401,087 + Pf6N2E2_2908 0.43 -0.7
3,401,087 + Pf6N2E2_2908 0.43 +0.5
3,401,088 - Pf6N2E2_2908 0.43 -1.3
3,401,088 - Pf6N2E2_2908 0.43 +0.1
3,401,132 + Pf6N2E2_2908 0.47 +0.9
3,401,133 - Pf6N2E2_2908 0.47 -0.7

Or see this region's nucleotide sequence